Wall clock time and date at job start Tue Mar 31 2020 10:39:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09007 * 109.49432 * 2 1 4 4 C 1.52760 * 109.59240 * 240.04824 * 2 1 3 5 5 N 1.46925 * 109.00575 * 185.53609 * 4 2 1 6 6 C 1.34777 * 120.62614 * 233.57902 * 5 4 2 7 7 O 1.21283 * 120.00463 * 359.72727 * 6 5 4 8 8 C 1.50700 * 119.99675 * 179.44850 * 6 5 4 9 9 C 1.53004 * 109.47208 * 180.27843 * 8 6 5 10 10 F 1.39906 * 109.47024 * 59.99975 * 9 8 6 11 11 F 1.39898 * 109.47292 * 179.97438 * 9 8 6 12 12 F 1.39903 * 109.47014 * 300.00050 * 9 8 6 13 13 C 1.46927 * 118.74028 * 53.31181 * 5 4 2 14 14 C 1.53193 * 108.77386 * 306.63705 * 13 5 4 15 15 C 1.53043 * 109.49647 * 120.06122 * 2 1 3 16 16 H 1.09001 * 109.44529 * 61.33865 * 15 2 1 17 17 C 1.52988 * 109.46471 * 301.37210 * 15 2 1 18 18 N 1.46497 * 109.47395 * 174.92758 * 17 15 2 19 19 C 1.36943 * 120.00129 * 179.97438 * 18 17 15 20 20 H 1.07999 * 119.99906 * 0.02562 * 19 18 17 21 21 C 1.38813 * 119.99619 * 180.02562 * 19 18 17 22 22 N 1.31613 * 120.00306 * 0.02562 * 21 19 18 23 23 Si 1.86803 * 119.99545 * 180.02562 * 21 19 18 24 24 H 1.48499 * 109.47413 * 0.02562 * 23 21 19 25 25 H 1.48500 * 109.46989 * 120.00393 * 23 21 19 26 26 H 1.48503 * 109.47102 * 240.00290 * 23 21 19 27 27 H 1.09003 * 109.47253 * 299.93601 * 1 2 3 28 28 H 1.09007 * 109.47198 * 59.93505 * 1 2 3 29 29 H 1.08999 * 109.47361 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.50779 * 65.65007 * 4 2 1 31 31 H 1.09004 * 109.43086 * 305.37497 * 4 2 1 32 32 H 1.09009 * 109.47352 * 300.27556 * 8 6 5 33 33 H 1.08998 * 109.47585 * 60.27844 * 8 6 5 34 34 H 1.08997 * 109.58480 * 66.42812 * 13 5 4 35 35 H 1.08999 * 109.58556 * 186.85469 * 13 5 4 36 36 H 1.08996 * 109.49520 * 174.58628 * 14 13 5 37 37 H 1.09000 * 109.49888 * 294.65354 * 14 13 5 38 38 H 1.08999 * 109.47152 * 294.93163 * 17 15 2 39 39 H 1.09006 * 109.47175 * 54.92686 * 17 15 2 40 40 H 0.96994 * 119.99926 * 0.02562 * 18 17 15 41 41 H 0.96996 * 120.00053 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8937 1.0276 0.0000 4 6 2.0422 -0.7185 -1.2470 5 7 3.5053 -0.8282 -1.1689 6 6 4.2818 -0.3844 -2.1771 7 8 3.7739 0.1066 -3.1629 8 6 5.7816 -0.4927 -2.0767 9 6 6.4204 0.0853 -3.3412 10 9 6.0577 1.4300 -3.4741 11 9 7.8127 -0.0146 -3.2478 12 9 5.9749 -0.6304 -4.4577 13 6 4.1059 -1.4254 0.0317 14 6 3.5708 -0.6939 1.2667 15 6 2.0407 -0.7227 1.2486 16 1 1.6971 -1.7570 1.2353 17 6 1.5030 -0.0230 2.4984 18 7 1.8910 -0.7835 3.6889 19 6 1.5196 -0.3457 4.9322 20 1 0.9403 0.5599 5.0350 21 6 1.8877 -1.0661 6.0602 22 7 2.5940 -2.1696 5.9349 23 14 1.3804 -0.4693 7.7561 24 1 0.5973 0.7856 7.6255 25 1 0.5471 -1.5058 8.4168 26 1 2.5932 -0.2137 8.5741 27 1 -0.3634 0.5128 0.8906 28 1 -0.3634 0.5149 -0.8895 29 1 -0.3634 -1.0276 -0.0005 30 1 1.7652 -0.1496 -2.1345 31 1 1.6032 -1.7150 -1.2974 32 1 6.1288 0.0650 -1.2068 33 1 6.0642 -1.5402 -1.9732 34 1 3.8386 -2.4807 0.0876 35 1 5.1902 -1.3228 -0.0126 36 1 3.9334 -1.1883 2.1678 37 1 3.9159 0.3400 1.2550 38 1 1.9182 0.9830 2.5586 39 1 0.4159 0.0353 2.4428 40 1 2.4115 -1.5967 3.5966 41 1 2.8515 -2.6727 6.7232 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001184009110.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:39:05 Heat of formation + Delta-G solvation = -209.810241 kcal Electronic energy + Delta-G solvation = -26319.919167 eV Core-core repulsion = 22011.700308 eV Total energy + Delta-G solvation = -4308.218859 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 308.145 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -51.07431 -48.59540 -48.54279 -41.44454 -39.30189 -36.58768 -35.13359 -33.59170 -32.63463 -31.99417 -28.38312 -27.85563 -25.68641 -24.79858 -23.73229 -22.70984 -21.24910 -20.40857 -19.61691 -19.54792 -19.09831 -18.39867 -17.77207 -16.86217 -16.68927 -16.53726 -15.79368 -15.54003 -15.47524 -15.39052 -15.22543 -14.97506 -14.95278 -14.72622 -14.67444 -14.58412 -14.15982 -14.11887 -13.85331 -13.40256 -13.16956 -13.07572 -12.93313 -12.87257 -12.74674 -12.61616 -12.13064 -11.93599 -11.88481 -11.62151 -11.51054 -11.16577 -11.04861 -10.85732 -9.72444 -8.93932 -7.93471 -5.20304 1.37776 1.48550 1.49421 1.50676 1.58720 1.98336 2.57504 2.71725 2.94219 3.06185 3.40553 3.55331 3.70928 3.78350 3.86479 4.02385 4.12646 4.19917 4.26394 4.35426 4.43582 4.54841 4.64960 4.68686 4.77112 4.81587 4.87872 5.01773 5.11809 5.16006 5.20344 5.29371 5.37950 5.49094 5.53936 5.60991 6.23624 6.30240 6.91768 7.37256 8.13833 8.38068 9.29915 Molecular weight = 308.15amu Principal moments of inertia in cm(-1) A = 0.022743 B = 0.002980 C = 0.002759 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1230.825582 B = 9392.938950 C =10146.349855 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.088 4.088 3 H 0.065 0.935 4 C 0.121 3.879 5 N -0.599 5.599 6 C 0.516 3.484 7 O -0.571 6.571 8 C -0.189 4.189 9 C 0.468 3.532 10 F -0.190 7.190 11 F -0.179 7.179 12 F -0.188 7.188 13 C 0.106 3.894 14 C -0.124 4.124 15 C -0.080 4.080 16 H 0.070 0.930 17 C 0.156 3.844 18 N -0.741 5.741 19 C -0.243 4.243 20 H 0.070 0.930 21 C -0.071 4.071 22 N -0.965 5.965 23 Si 0.967 3.033 24 H -0.270 1.270 25 H -0.294 1.294 26 H -0.293 1.293 27 H 0.055 0.945 28 H 0.067 0.933 29 H 0.061 0.939 30 H 0.084 0.916 31 H 0.082 0.918 32 H 0.168 0.832 33 H 0.175 0.825 34 H 0.089 0.911 35 H 0.118 0.882 36 H 0.070 0.930 37 H 0.061 0.939 38 H 0.010 0.990 39 H 0.023 0.977 40 H 0.377 0.623 41 H 0.251 0.749 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.542 1.149 -18.013 19.199 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.107 4.107 3 H 0.084 0.916 4 C -0.001 4.001 5 N -0.330 5.330 6 C 0.304 3.696 7 O -0.450 6.450 8 C -0.229 4.229 9 C 0.413 3.587 10 F -0.172 7.172 11 F -0.160 7.160 12 F -0.169 7.169 13 C -0.016 4.016 14 C -0.162 4.162 15 C -0.099 4.099 16 H 0.088 0.912 17 C 0.029 3.971 18 N -0.384 5.384 19 C -0.375 4.375 20 H 0.088 0.912 21 C -0.263 4.263 22 N -0.616 5.616 23 Si 0.797 3.203 24 H -0.195 1.195 25 H -0.221 1.221 26 H -0.220 1.220 27 H 0.074 0.926 28 H 0.086 0.914 29 H 0.080 0.920 30 H 0.102 0.898 31 H 0.100 0.900 32 H 0.186 0.814 33 H 0.192 0.808 34 H 0.107 0.893 35 H 0.136 0.864 36 H 0.088 0.912 37 H 0.080 0.920 38 H 0.028 0.972 39 H 0.041 0.959 40 H 0.209 0.791 41 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges 6.193 1.542 -18.447 19.520 hybrid contribution -0.066 0.129 1.073 1.083 sum 6.127 1.671 -17.374 18.498 Atomic orbital electron populations 1.21805 0.93653 1.02594 1.02229 1.21275 0.96741 0.99313 0.93403 0.91635 1.21603 0.78629 1.01590 0.98299 1.48104 1.07163 1.59686 1.18092 1.20247 0.89073 0.77612 0.82696 1.90789 1.75929 1.46046 1.32266 1.23138 0.92946 1.09720 0.97118 1.20102 0.76309 0.76064 0.86208 1.93194 1.91560 1.35861 1.96539 1.93209 1.30522 1.95919 1.96347 1.93192 1.89183 1.78007 1.56541 1.22072 0.99699 0.97850 0.81939 1.21858 0.95074 1.01241 0.98029 1.21234 0.95721 0.99651 0.93296 0.91162 1.20887 0.96688 0.93613 0.85874 1.42540 1.65241 1.29123 1.01481 1.19618 1.26700 1.05910 0.85310 0.91225 1.25444 1.01705 0.98022 1.01148 1.69781 1.44306 1.18486 1.29012 0.85170 0.77138 0.77504 0.80534 1.19464 1.22121 1.22004 0.92619 0.91389 0.91995 0.89754 0.89972 0.81439 0.80752 0.89286 0.86443 0.91164 0.91998 0.97216 0.95883 0.79060 0.94008 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.13 8.82 71.98 0.63 -2.49 16 2 C -0.09 -2.00 2.40 -10.86 -0.03 -2.03 16 3 H 0.07 1.62 8.14 -2.38 -0.02 1.60 16 4 C 0.12 2.51 5.69 86.22 0.49 3.00 16 5 N -0.60 -11.42 2.98 -819.73 -2.44 -13.86 16 6 C 0.52 10.72 7.47 87.66 0.65 11.37 16 7 O -0.57 -16.72 14.25 -3.04 -0.04 -16.77 16 8 C -0.19 -2.38 4.10 29.85 0.12 -2.26 16 9 C 0.47 8.76 2.89 71.98 0.21 8.97 16 10 F -0.19 -4.55 16.40 44.97 0.74 -3.82 16 11 F -0.18 -3.04 17.32 44.97 0.78 -2.26 16 12 F -0.19 -4.31 16.40 44.97 0.74 -3.57 16 13 C 0.11 1.69 6.35 86.36 0.55 2.23 16 14 C -0.12 -2.98 5.25 30.67 0.16 -2.82 16 15 C -0.08 -2.19 1.73 -10.77 -0.02 -2.21 16 16 H 0.07 1.99 8.14 -2.39 -0.02 1.97 16 17 C 0.16 5.77 5.41 86.38 0.47 6.24 16 18 N -0.74 -35.37 5.32 -343.47 -1.83 -37.20 16 19 C -0.24 -13.18 9.99 84.03 0.84 -12.34 16 20 H 0.07 3.69 7.83 -2.91 -0.02 3.67 16 21 C -0.07 -3.93 5.50 84.86 0.47 -3.46 16 22 N -0.96 -56.57 13.06 21.65 0.28 -56.29 16 23 Si 0.97 44.99 29.55 68.60 2.03 47.01 16 24 H -0.27 -11.94 7.11 99.48 0.71 -11.23 16 25 H -0.29 -13.69 7.11 99.48 0.71 -12.99 16 26 H -0.29 -13.59 7.11 99.48 0.71 -12.88 16 27 H 0.05 1.35 6.29 -2.39 -0.02 1.34 16 28 H 0.07 1.26 8.14 -2.38 -0.02 1.24 16 29 H 0.06 1.28 8.14 -2.39 -0.02 1.26 16 30 H 0.08 1.94 7.01 -2.39 -0.02 1.92 16 31 H 0.08 1.53 8.14 -2.38 -0.02 1.51 16 32 H 0.17 1.21 7.69 -2.38 -0.02 1.20 16 33 H 0.17 0.94 7.94 -2.39 -0.02 0.93 16 34 H 0.09 1.30 8.14 -2.39 -0.02 1.28 16 35 H 0.12 1.07 5.93 -2.39 -0.01 1.05 16 36 H 0.07 2.04 7.15 -2.39 -0.02 2.02 16 37 H 0.06 1.53 8.14 -2.39 -0.02 1.51 16 38 H 0.01 0.38 8.14 -2.39 -0.02 0.36 16 39 H 0.02 0.88 6.14 -2.38 -0.01 0.86 16 40 H 0.38 18.72 6.85 -92.71 -0.63 18.08 16 41 H 0.25 14.28 8.31 -92.71 -0.77 13.51 16 Total: -1.00 -69.57 338.46 5.22 -64.34 By element: Atomic # 1 Polarization: 17.79 SS G_CDS: 0.42 Total: 18.21 kcal Atomic # 6 Polarization: -0.35 SS G_CDS: 4.55 Total: 4.20 kcal Atomic # 7 Polarization: -103.37 SS G_CDS: -3.99 Total: -107.35 kcal Atomic # 8 Polarization: -16.72 SS G_CDS: -0.04 Total: -16.77 kcal Atomic # 9 Polarization: -11.90 SS G_CDS: 2.25 Total: -9.65 kcal Atomic # 14 Polarization: 44.99 SS G_CDS: 2.03 Total: 47.01 kcal Total: -69.57 5.22 -64.34 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001184009110.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -145.465 kcal (2) G-P(sol) polarization free energy of solvation -69.568 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -215.033 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.223 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.345 kcal (6) G-S(sol) free energy of system = (1) + (5) -209.810 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds