Wall clock time and date at job start Tue Mar 31 2020 09:25:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52999 * 109.46855 * 2 1 4 4 H 1.08990 * 109.47610 * 306.21848 * 3 2 1 5 5 C 1.50705 * 109.46909 * 186.21839 * 3 2 1 6 6 H 1.07997 * 119.99905 * 275.26308 * 5 3 2 7 7 C 1.37880 * 119.99985 * 95.53980 * 5 3 2 8 8 N 1.31510 * 119.99997 * 185.28682 * 7 5 3 9 9 Si 1.86802 * 119.99983 * 5.28485 * 7 5 3 10 10 H 1.48502 * 109.46839 * 84.88801 * 9 7 5 11 11 H 1.48496 * 109.47249 * 204.89248 * 9 7 5 12 12 H 1.48505 * 109.46817 * 324.88961 * 9 7 5 13 13 N 1.46506 * 109.47156 * 66.22285 * 3 2 1 14 14 C 1.34774 * 119.99500 * 274.99962 * 13 3 2 15 15 O 1.21276 * 120.00239 * 359.97438 * 14 13 3 16 16 C 1.50706 * 119.99597 * 179.97438 * 14 13 3 17 17 H 1.09001 * 109.45889 * 64.84653 * 16 14 13 18 18 C 1.53038 * 109.46078 * 304.87952 * 16 14 13 19 19 C 1.53120 * 109.27533 * 299.16491 * 18 16 14 20 20 C 1.53120 * 109.16105 * 302.34212 * 19 18 16 21 21 H 1.08994 * 109.53851 * 297.69841 * 20 19 18 22 22 C 1.52996 * 109.50324 * 177.59799 * 20 19 18 23 23 F 1.39907 * 109.47508 * 300.20297 * 22 20 19 24 24 F 1.39900 * 109.47257 * 60.19869 * 22 20 19 25 25 F 1.39898 * 109.47552 * 180.20006 * 22 20 19 26 26 C 1.53036 * 109.27460 * 57.66239 * 20 19 18 27 27 N 1.46838 * 109.46115 * 184.82450 * 16 14 13 28 28 H 1.08998 * 109.47445 * 59.99281 * 1 2 3 29 29 H 1.09005 * 109.47122 * 179.97438 * 1 2 3 30 30 H 1.08997 * 109.46828 * 299.99714 * 1 2 3 31 31 H 1.09005 * 109.47150 * 240.00425 * 2 1 3 32 32 H 1.08998 * 109.47445 * 120.00719 * 2 1 3 33 33 H 0.96999 * 120.00258 * 179.97438 * 8 7 5 34 34 H 0.96994 * 119.99617 * 94.99489 * 13 3 2 35 35 H 1.08998 * 109.50300 * 59.10612 * 18 16 14 36 36 H 1.08997 * 109.50216 * 179.22316 * 18 16 14 37 37 H 1.09007 * 109.51820 * 182.44659 * 19 18 16 38 38 H 1.08995 * 109.58147 * 62.28808 * 19 18 16 39 39 H 1.09001 * 109.46152 * 180.80740 * 26 20 19 40 40 H 1.08995 * 109.45925 * 60.82510 * 26 20 19 41 41 H 1.00904 * 111.00220 * 294.17615 * 27 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.5886 1.9875 -0.8290 5 6 3.5391 1.4453 -0.1539 6 1 4.1712 1.3270 0.7137 7 6 4.1037 1.6047 -1.4017 8 7 5.4063 1.5034 -1.5518 9 14 3.0184 1.9644 -2.8789 10 1 2.7635 3.4250 -2.9618 11 1 3.7010 1.5099 -4.1169 12 1 1.7281 1.2442 -2.7322 13 7 1.6776 2.0886 1.2640 14 6 0.4629 2.6545 1.4076 15 8 -0.3300 2.6293 0.4903 16 6 0.0900 3.3185 2.7080 17 1 0.7311 4.1850 2.8702 18 6 0.2736 2.3260 3.8583 19 6 -0.6435 1.1201 3.6367 20 6 -2.0929 1.6031 3.5338 21 1 -2.3871 2.0753 4.4710 22 6 -3.0098 0.4111 3.2525 23 9 -2.6304 -0.1958 2.0503 24 9 -2.9042 -0.5150 4.2958 25 9 -4.3333 0.8536 3.1541 26 6 -2.2079 2.6165 2.3928 27 7 -1.3121 3.7510 2.6520 28 1 -0.3634 0.5139 -0.8899 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 1.8934 -0.5138 -0.8901 32 1 1.8934 -0.5139 0.8899 33 1 5.8035 1.6152 -2.4296 34 1 2.3120 2.1089 1.9975 35 1 1.3111 1.9933 3.8898 36 1 0.0173 2.8099 4.8008 37 1 -0.5480 0.4308 4.4758 38 1 -0.3624 0.6120 2.7142 39 1 -3.2357 2.9731 2.3261 40 1 -1.9272 2.1394 1.4539 41 1 -1.4394 4.4770 1.9629 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001220898424.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:25:36 Heat of formation + Delta-G solvation = -203.458560 kcal Electronic energy + Delta-G solvation = -28122.336259 eV Core-core repulsion = 23814.392830 eV Total energy + Delta-G solvation = -4307.943429 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 308.145 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -50.14210 -47.65153 -47.56883 -40.41726 -37.47881 -35.25864 -32.82142 -32.63427 -31.96624 -30.83880 -27.61130 -26.12043 -24.12987 -23.22836 -22.61578 -21.18611 -19.90073 -19.43278 -18.40625 -18.32205 -17.94856 -17.09894 -16.53470 -15.93399 -15.53034 -14.91034 -14.74211 -14.63106 -14.21542 -14.17936 -14.02613 -13.80883 -13.74864 -13.70723 -13.56939 -13.22484 -12.98112 -12.81926 -12.64893 -12.00405 -11.94998 -11.83556 -11.55254 -11.22535 -10.99778 -10.85828 -10.75049 -10.62492 -10.59187 -10.01576 -9.88491 -9.78512 -9.25698 -8.75364 -8.27464 -8.06349 -6.28919 -4.32651 2.69005 3.10486 3.21795 3.29838 3.36815 3.65692 3.86302 3.93823 3.98809 4.25498 4.27382 4.63128 4.69574 4.85281 4.97253 5.04961 5.17433 5.28286 5.44764 5.53936 5.57628 5.77983 5.83403 5.95048 5.97802 6.05224 6.13625 6.26041 6.60372 6.72875 6.77042 6.92594 6.97132 7.19515 7.23646 7.29888 7.51197 8.05714 8.48949 8.71088 8.86668 9.33263 10.82721 Molecular weight = 308.15amu Principal moments of inertia in cm(-1) A = 0.022250 B = 0.004678 C = 0.004460 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1258.099294 B = 5984.417442 C = 6276.085938 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.124 4.124 3 C 0.235 3.765 4 H 0.050 0.950 5 C -0.532 4.532 6 H 0.078 0.922 7 C 0.083 3.917 8 N -0.887 5.887 9 Si 0.873 3.127 10 H -0.274 1.274 11 H -0.286 1.286 12 H -0.260 1.260 13 N -0.697 5.697 14 C 0.472 3.528 15 O -0.554 6.554 16 C 0.058 3.942 17 H 0.111 0.889 18 C -0.101 4.101 19 C -0.130 4.130 20 C -0.127 4.127 21 H 0.117 0.883 22 C 0.453 3.547 23 F -0.176 7.176 24 F -0.186 7.186 25 F -0.186 7.186 26 C 0.037 3.963 27 N -0.655 5.655 28 H 0.048 0.952 29 H 0.030 0.970 30 H 0.054 0.946 31 H 0.060 0.940 32 H 0.050 0.950 33 H 0.268 0.732 34 H 0.393 0.607 35 H 0.082 0.918 36 H 0.082 0.918 37 H 0.079 0.921 38 H 0.084 0.916 39 H 0.080 0.920 40 H 0.089 0.911 41 H 0.355 0.645 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.673 1.260 12.142 18.329 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.163 4.163 3 C 0.133 3.867 4 H 0.068 0.932 5 C -0.570 4.570 6 H 0.096 0.904 7 C -0.122 4.122 8 N -0.523 5.523 9 Si 0.700 3.300 10 H -0.200 1.200 11 H -0.212 1.212 12 H -0.184 1.184 13 N -0.345 5.345 14 C 0.256 3.744 15 O -0.435 6.435 16 C -0.056 4.056 17 H 0.129 0.871 18 C -0.139 4.139 19 C -0.168 4.168 20 C -0.147 4.147 21 H 0.135 0.865 22 C 0.399 3.601 23 F -0.157 7.157 24 F -0.167 7.167 25 F -0.168 7.168 26 C -0.093 4.093 27 N -0.285 5.285 28 H 0.067 0.933 29 H 0.049 0.951 30 H 0.073 0.927 31 H 0.078 0.922 32 H 0.069 0.931 33 H 0.078 0.922 34 H 0.226 0.774 35 H 0.101 0.899 36 H 0.101 0.899 37 H 0.098 0.902 38 H 0.102 0.898 39 H 0.099 0.901 40 H 0.107 0.893 41 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges -14.160 1.195 12.003 18.602 hybrid contribution -0.087 -0.200 -1.491 1.507 sum -14.248 0.994 10.512 17.734 Atomic orbital electron populations 1.21984 0.97313 0.99020 1.02049 1.22065 0.93667 0.99402 1.01196 1.19187 0.95599 0.89174 0.82771 0.93177 1.21003 0.88735 1.51688 0.95536 0.90368 1.24934 0.94851 0.93696 0.98731 1.69877 1.10141 1.48069 1.24259 0.86911 0.81355 0.79576 0.82200 1.19964 1.21200 1.18427 1.46738 1.14301 1.55315 1.18099 1.21614 0.83042 0.79776 0.90004 1.90596 1.49918 1.60735 1.42268 1.21829 0.91545 0.99153 0.93064 0.87133 1.21501 1.00026 0.94336 0.98004 1.21797 0.91800 0.98844 1.04310 1.22474 0.95726 0.92785 1.03750 0.86523 1.20616 0.80048 0.85163 0.74300 1.93225 1.90892 1.85054 1.46569 1.93163 1.96005 1.69062 1.58488 1.93163 1.38349 1.89259 1.95988 1.22208 0.97788 0.92017 0.97239 1.60631 1.02729 1.11079 1.54040 0.93301 0.95100 0.92696 0.92162 0.93095 0.92206 0.77373 0.89944 0.89901 0.90215 0.89789 0.90123 0.89319 0.82572 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.85 8.54 37.16 0.32 -2.53 16 2 C -0.12 -2.60 5.58 -26.73 -0.15 -2.75 16 3 C 0.24 5.27 1.91 -69.08 -0.13 5.13 16 4 H 0.05 1.25 4.68 -51.93 -0.24 1.00 16 5 C -0.53 -13.73 9.04 -34.44 -0.31 -14.04 16 6 H 0.08 2.13 8.06 -52.49 -0.42 1.71 16 7 C 0.08 2.25 5.47 -17.82 -0.10 2.15 16 8 N -0.89 -25.60 13.96 55.43 0.77 -24.83 16 9 Si 0.87 21.20 27.01 -169.99 -4.59 16.61 16 10 H -0.27 -6.68 7.11 56.52 0.40 -6.28 16 11 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 12 H -0.26 -6.25 6.79 56.52 0.38 -5.87 16 13 N -0.70 -12.61 4.90 -54.93 -0.27 -12.88 16 14 C 0.47 7.83 4.46 -10.98 -0.05 7.79 16 15 O -0.55 -10.87 11.02 5.56 0.06 -10.80 16 16 C 0.06 0.71 3.52 -68.88 -0.24 0.46 16 17 H 0.11 1.19 8.14 -51.93 -0.42 0.77 16 18 C -0.10 -1.02 5.49 -26.65 -0.15 -1.17 16 19 C -0.13 -1.47 4.79 -26.61 -0.13 -1.60 16 20 C -0.13 -1.41 2.33 -90.54 -0.21 -1.62 16 21 H 0.12 1.10 8.14 -51.93 -0.42 0.68 16 22 C 0.45 5.56 2.69 37.16 0.10 5.66 16 23 F -0.18 -2.55 16.11 2.25 0.04 -2.51 16 24 F -0.19 -2.25 16.86 2.25 0.04 -2.22 16 25 F -0.19 -2.29 16.82 2.25 0.04 -2.25 16 26 C 0.04 0.46 5.18 -3.83 -0.02 0.44 16 27 N -0.65 -7.64 6.48 -107.98 -0.70 -8.34 16 28 H 0.05 1.02 7.92 -51.93 -0.41 0.61 16 29 H 0.03 0.54 8.14 -51.93 -0.42 0.12 16 30 H 0.05 1.02 3.23 -51.93 -0.17 0.85 16 31 H 0.06 1.33 8.14 -51.93 -0.42 0.91 16 32 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 33 H 0.27 7.30 8.31 -40.82 -0.34 6.96 16 34 H 0.39 6.28 7.71 -40.82 -0.31 5.96 16 35 H 0.08 0.78 7.28 -51.93 -0.38 0.40 16 36 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 37 H 0.08 0.79 7.88 -51.93 -0.41 0.38 16 38 H 0.08 1.17 4.90 -51.93 -0.25 0.92 16 39 H 0.08 0.92 7.83 -51.93 -0.41 0.52 16 40 H 0.09 1.39 4.75 -51.93 -0.25 1.15 16 41 H 0.35 4.14 8.80 -39.29 -0.35 3.79 16 LS Contribution 323.35 15.07 4.87 4.87 Total: -1.00 -29.34 323.35 -6.10 -35.44 By element: Atomic # 1 Polarization: 14.27 SS G_CDS: -5.29 Total: 8.98 kcal Atomic # 6 Polarization: -1.00 SS G_CDS: -1.07 Total: -2.06 kcal Atomic # 7 Polarization: -45.85 SS G_CDS: -0.20 Total: -46.05 kcal Atomic # 8 Polarization: -10.87 SS G_CDS: 0.06 Total: -10.80 kcal Atomic # 9 Polarization: -7.09 SS G_CDS: 0.11 Total: -6.98 kcal Atomic # 14 Polarization: 21.20 SS G_CDS: -4.59 Total: 16.61 kcal Total LS contribution 4.87 Total: 4.87 kcal Total: -29.34 -6.10 -35.44 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001220898424.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -168.022 kcal (2) G-P(sol) polarization free energy of solvation -29.339 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -197.361 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.097 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.437 kcal (6) G-S(sol) free energy of system = (1) + (5) -203.459 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds