Wall clock time and date at job start Tue Mar 31 2020 09:25:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52999 * 109.46855 * 2 1 4 4 H 1.08990 * 109.47610 * 306.21848 * 3 2 1 5 5 C 1.50705 * 109.46909 * 186.21839 * 3 2 1 6 6 H 1.07997 * 119.99905 * 275.26308 * 5 3 2 7 7 C 1.37880 * 119.99985 * 95.53980 * 5 3 2 8 8 N 1.31510 * 119.99997 * 185.28682 * 7 5 3 9 9 Si 1.86802 * 119.99983 * 5.28485 * 7 5 3 10 10 H 1.48502 * 109.46839 * 84.88801 * 9 7 5 11 11 H 1.48496 * 109.47249 * 204.89248 * 9 7 5 12 12 H 1.48505 * 109.46817 * 324.88961 * 9 7 5 13 13 N 1.46506 * 109.47156 * 66.22285 * 3 2 1 14 14 C 1.34774 * 119.99500 * 274.99962 * 13 3 2 15 15 O 1.21276 * 120.00239 * 359.97438 * 14 13 3 16 16 C 1.50706 * 119.99597 * 179.97438 * 14 13 3 17 17 H 1.09001 * 109.45889 * 64.84653 * 16 14 13 18 18 C 1.53038 * 109.46078 * 304.87952 * 16 14 13 19 19 C 1.53120 * 109.27533 * 299.16491 * 18 16 14 20 20 C 1.53120 * 109.16105 * 302.34212 * 19 18 16 21 21 H 1.08994 * 109.53851 * 297.69841 * 20 19 18 22 22 C 1.52996 * 109.50324 * 177.59799 * 20 19 18 23 23 F 1.39907 * 109.47508 * 300.20297 * 22 20 19 24 24 F 1.39900 * 109.47257 * 60.19869 * 22 20 19 25 25 F 1.39898 * 109.47552 * 180.20006 * 22 20 19 26 26 C 1.53036 * 109.27460 * 57.66239 * 20 19 18 27 27 N 1.46838 * 109.46115 * 184.82450 * 16 14 13 28 28 H 1.08998 * 109.47445 * 59.99281 * 1 2 3 29 29 H 1.09005 * 109.47122 * 179.97438 * 1 2 3 30 30 H 1.08997 * 109.46828 * 299.99714 * 1 2 3 31 31 H 1.09005 * 109.47150 * 240.00425 * 2 1 3 32 32 H 1.08998 * 109.47445 * 120.00719 * 2 1 3 33 33 H 0.96999 * 120.00258 * 179.97438 * 8 7 5 34 34 H 0.96994 * 119.99617 * 94.99489 * 13 3 2 35 35 H 1.08998 * 109.50300 * 59.10612 * 18 16 14 36 36 H 1.08997 * 109.50216 * 179.22316 * 18 16 14 37 37 H 1.09007 * 109.51820 * 182.44659 * 19 18 16 38 38 H 1.08995 * 109.58147 * 62.28808 * 19 18 16 39 39 H 1.09001 * 109.46152 * 180.80740 * 26 20 19 40 40 H 1.08995 * 109.45925 * 60.82510 * 26 20 19 41 41 H 1.00904 * 111.00220 * 294.17615 * 27 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.5886 1.9875 -0.8290 5 6 3.5391 1.4453 -0.1539 6 1 4.1712 1.3270 0.7137 7 6 4.1037 1.6047 -1.4017 8 7 5.4063 1.5034 -1.5518 9 14 3.0184 1.9644 -2.8789 10 1 2.7635 3.4250 -2.9618 11 1 3.7010 1.5099 -4.1169 12 1 1.7281 1.2442 -2.7322 13 7 1.6776 2.0886 1.2640 14 6 0.4629 2.6545 1.4076 15 8 -0.3300 2.6293 0.4903 16 6 0.0900 3.3185 2.7080 17 1 0.7311 4.1850 2.8702 18 6 0.2736 2.3260 3.8583 19 6 -0.6435 1.1201 3.6367 20 6 -2.0929 1.6031 3.5338 21 1 -2.3871 2.0753 4.4710 22 6 -3.0098 0.4111 3.2525 23 9 -2.6304 -0.1958 2.0503 24 9 -2.9042 -0.5150 4.2958 25 9 -4.3333 0.8536 3.1541 26 6 -2.2079 2.6165 2.3928 27 7 -1.3121 3.7510 2.6520 28 1 -0.3634 0.5139 -0.8899 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 1.8934 -0.5138 -0.8901 32 1 1.8934 -0.5139 0.8899 33 1 5.8035 1.6152 -2.4296 34 1 2.3120 2.1089 1.9975 35 1 1.3111 1.9933 3.8898 36 1 0.0173 2.8099 4.8008 37 1 -0.5480 0.4308 4.4758 38 1 -0.3624 0.6120 2.7142 39 1 -3.2357 2.9731 2.3261 40 1 -1.9272 2.1394 1.4539 41 1 -1.4394 4.4770 1.9629 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001220898424.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:25:35 Heat of formation + Delta-G solvation = -224.425935 kcal Electronic energy + Delta-G solvation = -28123.245473 eV Core-core repulsion = 23814.392830 eV Total energy + Delta-G solvation = -4308.852643 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 308.145 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -51.12088 -48.60443 -48.59180 -41.62800 -38.70287 -36.85284 -34.47422 -33.85848 -33.34080 -32.05299 -29.41205 -27.15223 -25.25175 -24.66439 -23.86484 -22.37237 -21.45042 -20.77499 -19.48360 -19.29979 -18.99602 -18.73376 -17.74359 -17.32726 -17.01173 -16.22981 -15.94792 -15.70531 -15.59782 -15.28457 -15.03411 -14.87737 -14.85533 -14.76385 -14.74156 -14.70769 -14.23944 -14.07227 -13.84239 -13.76688 -13.66455 -12.96676 -12.88719 -12.67771 -12.55921 -12.35328 -12.14432 -11.87588 -11.73624 -11.53984 -11.48034 -11.21647 -11.02778 -10.83321 -9.67191 -9.37208 -8.39924 -6.44464 1.25584 1.30972 1.40927 1.75182 1.81394 2.24745 2.52853 2.72879 2.94523 3.03410 3.06043 3.30721 3.73062 3.78526 3.90665 4.05523 4.11388 4.28215 4.32711 4.40874 4.54449 4.56795 4.66795 4.68447 4.81652 4.96369 4.97561 5.01196 5.11135 5.19511 5.26987 5.35263 5.42463 5.58421 5.76209 5.82543 6.13263 6.24018 6.61606 6.95823 7.21749 7.52087 8.75078 Molecular weight = 308.15amu Principal moments of inertia in cm(-1) A = 0.022250 B = 0.004678 C = 0.004460 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1258.099294 B = 5984.417442 C = 6276.085938 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.121 4.121 3 C 0.243 3.757 4 H 0.027 0.973 5 C -0.523 4.523 6 H 0.058 0.942 7 C 0.036 3.964 8 N -0.929 5.929 9 Si 0.923 3.077 10 H -0.274 1.274 11 H -0.281 1.281 12 H -0.260 1.260 13 N -0.698 5.698 14 C 0.470 3.530 15 O -0.584 6.584 16 C 0.066 3.934 17 H 0.133 0.867 18 C -0.096 4.096 19 C -0.132 4.132 20 C -0.119 4.119 21 H 0.143 0.857 22 C 0.451 3.549 23 F -0.193 7.193 24 F -0.184 7.184 25 F -0.187 7.187 26 C 0.038 3.962 27 N -0.641 5.641 28 H 0.027 0.973 29 H 0.046 0.954 30 H 0.064 0.936 31 H 0.043 0.957 32 H 0.061 0.939 33 H 0.269 0.731 34 H 0.404 0.596 35 H 0.091 0.909 36 H 0.111 0.889 37 H 0.097 0.903 38 H 0.055 0.945 39 H 0.089 0.911 40 H 0.056 0.944 41 H 0.355 0.645 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.999 1.905 14.141 20.702 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.160 4.160 3 C 0.138 3.862 4 H 0.045 0.955 5 C -0.561 4.561 6 H 0.076 0.924 7 C -0.165 4.165 8 N -0.568 5.568 9 Si 0.749 3.251 10 H -0.200 1.200 11 H -0.206 1.206 12 H -0.185 1.185 13 N -0.348 5.348 14 C 0.256 3.744 15 O -0.466 6.466 16 C -0.048 4.048 17 H 0.151 0.849 18 C -0.134 4.134 19 C -0.169 4.169 20 C -0.139 4.139 21 H 0.161 0.839 22 C 0.397 3.603 23 F -0.174 7.174 24 F -0.165 7.165 25 F -0.169 7.169 26 C -0.092 4.092 27 N -0.270 5.270 28 H 0.047 0.953 29 H 0.065 0.935 30 H 0.083 0.917 31 H 0.062 0.938 32 H 0.080 0.920 33 H 0.079 0.921 34 H 0.240 0.760 35 H 0.110 0.890 36 H 0.130 0.870 37 H 0.115 0.885 38 H 0.073 0.927 39 H 0.108 0.892 40 H 0.074 0.926 41 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges -15.506 1.849 14.030 20.992 hybrid contribution 0.261 -0.412 -2.037 2.095 sum -15.245 1.437 11.993 19.450 Atomic orbital electron populations 1.21854 0.95911 0.99853 1.01558 1.21967 0.94787 0.98332 1.00923 1.18830 0.93120 0.90042 0.84167 0.95498 1.21232 0.90453 1.49880 0.94581 0.92353 1.25546 0.95631 0.94199 1.01117 1.69971 1.11547 1.50399 1.24886 0.86113 0.79893 0.79184 0.79947 1.19996 1.20649 1.18481 1.46447 1.15545 1.55855 1.16920 1.22515 0.81708 0.78762 0.91384 1.90602 1.50548 1.61515 1.43916 1.21976 0.91986 0.99977 0.90893 0.84934 1.21569 1.00397 0.93353 0.98076 1.21822 0.91988 0.99579 1.03553 1.22480 0.95423 0.91801 1.04159 0.83929 1.20844 0.80237 0.85496 0.73722 1.93193 1.91064 1.85441 1.47729 1.93164 1.96002 1.69143 1.58237 1.93160 1.38517 1.89218 1.95965 1.22131 0.98361 0.92321 0.96372 1.60706 1.02224 1.10552 1.53548 0.95340 0.93542 0.91691 0.93784 0.92006 0.92135 0.76037 0.89017 0.87034 0.88459 0.92684 0.89247 0.92614 0.82550 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.17 8.54 71.98 0.61 -4.56 16 2 C -0.12 -5.04 5.58 30.59 0.17 -4.87 16 3 C 0.24 10.85 1.91 44.25 0.08 10.93 16 4 H 0.03 1.35 4.68 -2.39 -0.01 1.34 16 5 C -0.52 -27.27 9.04 25.60 0.23 -27.04 16 6 H 0.06 3.22 8.06 -2.91 -0.02 3.20 16 7 C 0.04 1.96 5.47 84.66 0.46 2.43 16 8 N -0.93 -54.57 13.96 21.45 0.30 -54.27 16 9 Si 0.92 44.38 27.01 68.60 1.85 46.23 16 10 H -0.27 -13.09 7.11 99.48 0.71 -12.38 16 11 H -0.28 -13.14 7.11 99.48 0.71 -12.43 16 12 H -0.26 -12.41 6.79 99.48 0.68 -11.74 16 13 N -0.70 -24.55 4.90 -446.09 -2.18 -26.74 16 14 C 0.47 14.92 4.46 87.66 0.39 15.31 16 15 O -0.58 -22.53 11.02 -3.02 -0.03 -22.57 16 16 C 0.07 1.39 3.52 44.20 0.16 1.55 16 17 H 0.13 2.33 8.14 -2.39 -0.02 2.31 16 18 C -0.10 -1.58 5.49 30.65 0.17 -1.41 16 19 C -0.13 -2.58 4.79 30.67 0.15 -2.44 16 20 C -0.12 -2.30 2.33 -10.74 -0.03 -2.32 16 21 H 0.14 2.07 8.14 -2.39 -0.02 2.05 16 22 C 0.45 10.22 2.69 71.98 0.19 10.41 16 23 F -0.19 -5.41 16.11 44.97 0.72 -4.69 16 24 F -0.18 -4.05 16.86 44.97 0.76 -3.30 16 25 F -0.19 -4.27 16.82 44.97 0.76 -3.51 16 26 C 0.04 0.86 5.18 86.32 0.45 1.31 16 27 N -0.64 -13.12 6.48 -495.55 -3.21 -16.33 16 28 H 0.03 1.18 7.92 -2.39 -0.02 1.16 16 29 H 0.05 1.60 8.14 -2.38 -0.02 1.58 16 30 H 0.06 2.37 3.23 -2.39 -0.01 2.36 16 31 H 0.04 1.95 8.14 -2.38 -0.02 1.93 16 32 H 0.06 2.41 8.14 -2.39 -0.02 2.39 16 33 H 0.27 14.94 8.31 -92.71 -0.77 14.17 16 34 H 0.40 12.31 7.71 -92.71 -0.71 11.60 16 35 H 0.09 1.38 7.28 -2.39 -0.02 1.36 16 36 H 0.11 1.30 8.14 -2.39 -0.02 1.28 16 37 H 0.10 1.57 7.88 -2.38 -0.02 1.56 16 38 H 0.05 1.42 4.90 -2.39 -0.01 1.41 16 39 H 0.09 1.86 7.83 -2.39 -0.02 1.84 16 40 H 0.06 1.70 4.75 -2.39 -0.01 1.69 16 41 H 0.36 7.45 8.80 -89.69 -0.79 6.66 16 Total: -1.00 -64.08 323.35 1.56 -62.52 By element: Atomic # 1 Polarization: 23.78 SS G_CDS: -0.44 Total: 23.34 kcal Atomic # 6 Polarization: -3.73 SS G_CDS: 3.04 Total: -0.69 kcal Atomic # 7 Polarization: -92.24 SS G_CDS: -5.10 Total: -97.34 kcal Atomic # 8 Polarization: -22.53 SS G_CDS: -0.03 Total: -22.57 kcal Atomic # 9 Polarization: -13.74 SS G_CDS: 2.24 Total: -11.50 kcal Atomic # 14 Polarization: 44.38 SS G_CDS: 1.85 Total: 46.23 kcal Total: -64.08 1.56 -62.52 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001220898424.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -161.910 kcal (2) G-P(sol) polarization free energy of solvation -64.080 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -225.990 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.564 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.516 kcal (6) G-S(sol) free energy of system = (1) + (5) -224.426 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds