Wall clock time and date at job start Tue Mar 31 2020 09:02:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53001 * 109.47417 * 2 1 4 4 C 1.52993 * 109.47620 * 179.97438 * 3 2 1 5 5 N 1.46898 * 109.47502 * 185.36032 * 4 3 2 6 6 C 1.46903 * 110.99992 * 302.05196 * 5 4 3 7 7 C 1.50694 * 109.47229 * 290.58972 * 6 5 4 8 8 H 1.08002 * 120.00039 * 354.71887 * 7 6 5 9 9 C 1.37879 * 120.00278 * 174.72408 * 7 6 5 10 10 N 1.31506 * 119.99592 * 0.02562 * 9 7 6 11 11 Si 1.86799 * 119.99922 * 179.97438 * 9 7 6 12 12 H 1.48493 * 109.46913 * 90.00308 * 11 9 7 13 13 H 1.48506 * 109.46866 * 210.00099 * 11 9 7 14 14 H 1.48497 * 109.47149 * 329.99743 * 11 9 7 15 15 C 1.46904 * 110.99754 * 66.00070 * 5 4 3 16 16 C 1.50709 * 109.46614 * 66.05063 * 15 5 4 17 17 C 1.38532 * 119.86993 * 89.99881 * 16 15 5 18 18 F 1.35101 * 119.94127 * 0.04160 * 17 16 15 19 19 C 1.38193 * 120.12577 * 180.02562 * 17 16 15 20 20 C 1.39600 * 119.87099 * 0.02562 * 19 17 16 21 21 C 1.43203 * 120.13086 * 179.97438 * 20 19 17 22 22 N 8.42692 * 131.11753 * 90.06433 * 2 1 3 23 23 C 1.39603 * 119.74589 * 0.27568 * 20 19 17 24 24 C 1.38192 * 119.87024 * 359.44080 * 23 20 19 25 25 F 1.35104 * 119.93538 * 180.27904 * 24 23 20 26 26 H 1.08997 * 109.46611 * 60.00233 * 1 2 3 27 27 H 1.08995 * 109.47053 * 180.02562 * 1 2 3 28 28 H 1.08996 * 109.47084 * 300.00736 * 1 2 3 29 29 H 1.08994 * 109.47520 * 239.99551 * 2 1 3 30 30 H 1.09008 * 109.46970 * 119.99393 * 2 1 3 31 31 H 1.09003 * 109.47138 * 59.99087 * 3 2 1 32 32 H 1.09008 * 109.46713 * 300.00178 * 3 2 1 33 33 H 1.08999 * 109.47108 * 65.36091 * 4 3 2 34 34 H 1.09002 * 109.46951 * 305.36032 * 4 3 2 35 35 H 1.09003 * 109.47170 * 50.58940 * 6 5 4 36 36 H 1.09003 * 109.47004 * 170.58697 * 6 5 4 37 37 H 0.97009 * 119.99942 * 180.02562 * 10 9 7 38 38 H 1.08994 * 109.47534 * 306.05261 * 15 5 4 39 39 H 1.09000 * 109.46887 * 186.04635 * 15 5 4 40 40 H 1.07998 * 120.06565 * 179.97438 * 19 17 16 41 41 H 1.08005 * 120.06359 * 179.72714 * 23 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5700 1.4425 0.0006 5 7 4.0597 2.8215 0.1300 6 6 3.5494 3.6656 -0.9586 7 6 4.1930 3.2538 -2.2575 8 1 4.9711 2.5048 -2.2610 9 6 3.7887 3.8332 -3.4414 10 7 2.8416 4.7457 -3.4371 11 14 4.5870 3.3232 -5.0514 12 1 3.8340 2.1862 -5.6389 13 1 4.5711 4.4686 -5.9964 14 1 5.9907 2.9096 -4.7986 15 6 3.7087 3.3839 1.4410 16 6 4.4481 2.6379 2.5218 17 6 5.6992 3.0726 2.9279 18 9 6.2527 4.1639 2.3551 19 6 6.3822 2.3923 3.9181 20 6 5.8092 1.2647 4.5089 21 6 6.5122 0.5552 5.5351 22 7 7.0716 -0.0071 6.3485 23 6 4.5509 0.8277 4.0912 24 6 3.8747 1.5194 3.1042 25 9 2.6544 1.1009 2.7029 26 1 -0.3632 0.5138 -0.8900 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3633 0.5139 0.8899 29 1 1.8934 -0.5139 -0.8899 30 1 1.8933 -0.5138 0.8901 31 1 1.6766 1.9564 0.8899 32 1 1.6767 1.9563 -0.8901 33 1 3.9337 1.0140 -0.9332 34 1 3.9330 0.8479 0.8390 35 1 2.4686 3.5464 -1.0348 36 1 3.7860 4.7091 -0.7506 37 1 2.5568 5.1531 -4.2701 38 1 2.6351 3.2872 1.6022 39 1 3.9872 4.4372 1.4707 40 1 7.3577 2.7318 4.2336 41 1 4.1047 -0.0466 4.5417 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001235656496.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:02:48 Heat of formation + Delta-G solvation = -38.310879 kcal Electronic energy + Delta-G solvation = -25623.846334 eV Core-core repulsion = 21753.833470 eV Total energy + Delta-G solvation = -3870.012864 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 308.140 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -49.14328 -48.95548 -39.52058 -37.69983 -36.54534 -34.02471 -32.89595 -31.64827 -30.69396 -28.39299 -27.64272 -25.39497 -23.64988 -23.08357 -22.43123 -21.16902 -19.70938 -19.41016 -17.67789 -16.62091 -16.48762 -16.32175 -15.87188 -15.76961 -15.39667 -14.92484 -14.76388 -14.55548 -14.18087 -14.10672 -13.84114 -13.67387 -13.62082 -13.23056 -12.58920 -12.55646 -12.38350 -12.22015 -12.05751 -11.83599 -11.70186 -11.25063 -11.10551 -10.96004 -10.74617 -10.70205 -10.53472 -10.47030 -9.95154 -9.73760 -9.29789 -9.03570 -8.98793 -8.44170 -7.28179 -6.04158 -4.04968 0.24649 0.72591 2.27674 2.46558 3.23861 3.30979 3.35729 3.37757 3.42064 3.90916 4.22237 4.39908 4.43593 4.53234 4.57844 4.99945 5.09662 5.31379 5.33701 5.35809 5.44049 5.54361 5.59946 5.64384 5.74431 5.81007 5.90447 5.99646 6.12767 6.15367 6.23664 6.28702 6.44835 6.47758 6.54298 6.77137 6.95194 7.09428 7.21874 7.36956 7.76756 8.01900 8.10718 8.47727 9.02505 9.59141 11.06323 Molecular weight = 308.14amu Principal moments of inertia in cm(-1) A = 0.013992 B = 0.004424 C = 0.003691 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2000.725673 B = 6327.817453 C = 7583.723062 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.115 4.115 3 C -0.156 4.156 4 C 0.064 3.936 5 N -0.525 5.525 6 C 0.189 3.811 7 C -0.503 4.503 8 H 0.063 0.937 9 C 0.057 3.943 10 N -0.898 5.898 11 Si 0.895 3.105 12 H -0.282 1.282 13 H -0.287 1.287 14 H -0.273 1.273 15 C 0.079 3.921 16 C -0.103 4.103 17 C 0.151 3.849 18 F -0.113 7.113 19 C -0.120 4.120 20 C 0.018 3.982 21 C 0.261 3.739 22 N -0.408 5.408 23 C -0.120 4.120 24 C 0.134 3.866 25 F -0.115 7.115 26 H 0.053 0.947 27 H 0.046 0.954 28 H 0.049 0.951 29 H 0.058 0.942 30 H 0.054 0.946 31 H 0.057 0.943 32 H 0.076 0.924 33 H 0.081 0.919 34 H 0.048 0.952 35 H 0.009 0.991 36 H 0.025 0.975 37 H 0.261 0.739 38 H 0.052 0.948 39 H 0.089 0.911 40 H 0.151 0.849 41 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.169 -6.144 14.231 15.502 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.154 4.154 3 C -0.195 4.195 4 C -0.064 4.064 5 N -0.248 5.248 6 C 0.065 3.935 7 C -0.541 4.541 8 H 0.081 0.919 9 C -0.145 4.145 10 N -0.538 5.538 11 Si 0.723 3.277 12 H -0.208 1.208 13 H -0.213 1.213 14 H -0.198 1.198 15 C -0.049 4.049 16 C -0.106 4.106 17 C 0.131 3.869 18 F -0.091 7.091 19 C -0.141 4.141 20 C 0.015 3.985 21 C -0.055 4.055 22 N -0.082 5.082 23 C -0.142 4.142 24 C 0.114 3.886 25 F -0.093 7.093 26 H 0.072 0.928 27 H 0.065 0.935 28 H 0.068 0.932 29 H 0.077 0.923 30 H 0.073 0.927 31 H 0.075 0.925 32 H 0.094 0.906 33 H 0.099 0.901 34 H 0.067 0.933 35 H 0.026 0.974 36 H 0.043 0.957 37 H 0.070 0.930 38 H 0.070 0.930 39 H 0.107 0.893 40 H 0.169 0.831 41 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges 1.437 -6.847 15.272 16.798 hybrid contribution -0.869 0.162 -1.430 1.681 sum 0.568 -6.685 13.842 15.382 Atomic orbital electron populations 1.21751 0.96613 1.00663 1.01630 1.21402 0.95220 0.97508 1.01236 1.22252 0.98300 0.96454 1.02465 1.22086 0.92167 0.90743 1.01450 1.62512 1.59296 1.02766 1.00260 1.19841 0.94490 0.91778 0.87433 1.21092 1.20023 1.22598 0.90433 0.91929 1.24950 0.95197 0.95179 0.99130 1.69948 1.29413 1.27295 1.27160 0.86538 0.79876 0.77982 0.83280 1.20789 1.21322 1.19779 1.21048 0.96770 0.98337 0.88760 1.20374 0.94994 0.96316 0.98916 1.16805 0.90996 0.85883 0.93216 1.91603 1.84405 1.50165 1.82956 1.21102 1.01412 0.95048 0.96570 1.15172 0.93391 0.95219 0.94761 1.25334 0.93558 0.93552 0.93044 1.81286 1.08248 1.08511 1.10190 1.21049 0.94061 1.01372 0.97717 1.16889 0.82365 0.93911 0.95448 1.91593 1.39603 1.88987 1.89153 0.92786 0.93515 0.93205 0.92343 0.92682 0.92469 0.90550 0.90111 0.93328 0.97363 0.95658 0.92957 0.93014 0.89284 0.83149 0.83269 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.93 9.91 37.16 0.37 -1.56 16 2 C -0.12 -1.65 5.87 -26.73 -0.16 -1.80 16 3 C -0.16 -2.63 3.62 -26.73 -0.10 -2.73 16 4 C 0.06 1.15 4.60 -3.83 -0.02 1.13 16 5 N -0.53 -10.38 4.67 -237.51 -1.11 -11.49 16 6 C 0.19 4.58 4.50 -4.98 -0.02 4.56 16 7 C -0.50 -13.49 8.49 -34.44 -0.29 -13.78 16 8 H 0.06 1.69 7.52 -52.49 -0.39 1.29 16 9 C 0.06 1.55 5.46 -17.82 -0.10 1.46 16 10 N -0.90 -25.81 13.29 55.43 0.74 -25.07 16 11 Si 0.90 21.19 29.54 -169.99 -5.02 16.17 16 12 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 13 H -0.29 -6.79 7.11 56.52 0.40 -6.38 16 14 H -0.27 -6.39 7.11 56.52 0.40 -5.99 16 15 C 0.08 1.28 4.63 -4.97 -0.02 1.26 16 16 C -0.10 -1.36 4.91 -104.40 -0.51 -1.87 16 17 C 0.15 1.84 7.23 -39.49 -0.29 1.55 16 18 F -0.11 -1.59 16.46 2.25 0.04 -1.56 16 19 C -0.12 -1.13 9.73 -39.09 -0.38 -1.51 16 20 C 0.02 0.17 5.73 -106.95 -0.61 -0.45 16 21 C 0.26 2.60 15.33 -22.47 -0.34 2.25 16 22 N -0.41 -4.91 18.54 41.84 0.78 -4.13 16 23 C -0.12 -1.09 9.73 -39.09 -0.38 -1.47 16 24 C 0.13 1.54 5.87 -39.49 -0.23 1.30 16 25 F -0.12 -1.43 12.46 2.25 0.03 -1.40 16 26 H 0.05 0.74 8.14 -51.93 -0.42 0.31 16 27 H 0.05 0.53 8.14 -51.93 -0.42 0.10 16 28 H 0.05 0.62 8.14 -51.93 -0.42 0.19 16 29 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 30 H 0.05 0.72 7.64 -51.92 -0.40 0.32 16 31 H 0.06 0.93 4.92 -51.93 -0.26 0.68 16 32 H 0.08 1.54 6.48 -51.92 -0.34 1.21 16 33 H 0.08 1.61 7.26 -51.93 -0.38 1.24 16 34 H 0.05 0.77 5.38 -51.93 -0.28 0.50 16 35 H 0.01 0.22 5.90 -51.93 -0.31 -0.09 16 36 H 0.03 0.66 7.86 -51.93 -0.41 0.25 16 37 H 0.26 7.14 8.31 -40.82 -0.34 6.80 16 38 H 0.05 0.83 5.67 -51.93 -0.29 0.53 16 39 H 0.09 1.47 7.37 -51.93 -0.38 1.09 16 40 H 0.15 1.10 8.06 -52.49 -0.42 0.68 16 41 H 0.15 1.03 8.06 -52.48 -0.42 0.61 16 LS Contribution 344.88 15.07 5.20 5.20 Total: -1.00 -28.81 344.88 -7.54 -36.35 By element: Atomic # 1 Polarization: 2.69 SS G_CDS: -5.10 Total: -2.42 kcal Atomic # 6 Polarization: -8.56 SS G_CDS: -3.09 Total: -11.65 kcal Atomic # 7 Polarization: -41.09 SS G_CDS: 0.40 Total: -40.69 kcal Atomic # 9 Polarization: -3.02 SS G_CDS: 0.07 Total: -2.96 kcal Atomic # 14 Polarization: 21.19 SS G_CDS: -5.02 Total: 16.17 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -28.81 -7.54 -36.35 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001235656496.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.960 kcal (2) G-P(sol) polarization free energy of solvation -28.807 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.766 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.544 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.351 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.311 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds