Wall clock time and date at job start Tue Mar 31 2020 09:02:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53001 * 109.47417 * 2 1 4 4 C 1.52993 * 109.47620 * 179.97438 * 3 2 1 5 5 N 1.46898 * 109.47502 * 185.36032 * 4 3 2 6 6 C 1.46903 * 110.99992 * 302.05196 * 5 4 3 7 7 C 1.50694 * 109.47229 * 290.58972 * 6 5 4 8 8 H 1.08002 * 120.00039 * 354.71887 * 7 6 5 9 9 C 1.37879 * 120.00278 * 174.72408 * 7 6 5 10 10 N 1.31506 * 119.99592 * 0.02562 * 9 7 6 11 11 Si 1.86799 * 119.99922 * 179.97438 * 9 7 6 12 12 H 1.48493 * 109.46913 * 90.00308 * 11 9 7 13 13 H 1.48506 * 109.46866 * 210.00099 * 11 9 7 14 14 H 1.48497 * 109.47149 * 329.99743 * 11 9 7 15 15 C 1.46904 * 110.99754 * 66.00070 * 5 4 3 16 16 C 1.50709 * 109.46614 * 66.05063 * 15 5 4 17 17 C 1.38532 * 119.86993 * 89.99881 * 16 15 5 18 18 F 1.35101 * 119.94127 * 0.04160 * 17 16 15 19 19 C 1.38193 * 120.12577 * 180.02562 * 17 16 15 20 20 C 1.39600 * 119.87099 * 0.02562 * 19 17 16 21 21 C 1.43203 * 120.13086 * 179.97438 * 20 19 17 22 22 N 8.42692 * 131.11753 * 90.06433 * 2 1 3 23 23 C 1.39603 * 119.74589 * 0.27568 * 20 19 17 24 24 C 1.38192 * 119.87024 * 359.44080 * 23 20 19 25 25 F 1.35104 * 119.93538 * 180.27904 * 24 23 20 26 26 H 1.08997 * 109.46611 * 60.00233 * 1 2 3 27 27 H 1.08995 * 109.47053 * 180.02562 * 1 2 3 28 28 H 1.08996 * 109.47084 * 300.00736 * 1 2 3 29 29 H 1.08994 * 109.47520 * 239.99551 * 2 1 3 30 30 H 1.09008 * 109.46970 * 119.99393 * 2 1 3 31 31 H 1.09003 * 109.47138 * 59.99087 * 3 2 1 32 32 H 1.09008 * 109.46713 * 300.00178 * 3 2 1 33 33 H 1.08999 * 109.47108 * 65.36091 * 4 3 2 34 34 H 1.09002 * 109.46951 * 305.36032 * 4 3 2 35 35 H 1.09003 * 109.47170 * 50.58940 * 6 5 4 36 36 H 1.09003 * 109.47004 * 170.58697 * 6 5 4 37 37 H 0.97009 * 119.99942 * 180.02562 * 10 9 7 38 38 H 1.08994 * 109.47534 * 306.05261 * 15 5 4 39 39 H 1.09000 * 109.46887 * 186.04635 * 15 5 4 40 40 H 1.07998 * 120.06565 * 179.97438 * 19 17 16 41 41 H 1.08005 * 120.06359 * 179.72714 * 23 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5700 1.4425 0.0006 5 7 4.0597 2.8215 0.1300 6 6 3.5494 3.6656 -0.9586 7 6 4.1930 3.2538 -2.2575 8 1 4.9711 2.5048 -2.2610 9 6 3.7887 3.8332 -3.4414 10 7 2.8416 4.7457 -3.4371 11 14 4.5870 3.3232 -5.0514 12 1 3.8340 2.1862 -5.6389 13 1 4.5711 4.4686 -5.9964 14 1 5.9907 2.9096 -4.7986 15 6 3.7087 3.3839 1.4410 16 6 4.4481 2.6379 2.5218 17 6 5.6992 3.0726 2.9279 18 9 6.2527 4.1639 2.3551 19 6 6.3822 2.3923 3.9181 20 6 5.8092 1.2647 4.5089 21 6 6.5122 0.5552 5.5351 22 7 7.0716 -0.0071 6.3485 23 6 4.5509 0.8277 4.0912 24 6 3.8747 1.5194 3.1042 25 9 2.6544 1.1009 2.7029 26 1 -0.3632 0.5138 -0.8900 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3633 0.5139 0.8899 29 1 1.8934 -0.5139 -0.8899 30 1 1.8933 -0.5138 0.8901 31 1 1.6766 1.9564 0.8899 32 1 1.6767 1.9563 -0.8901 33 1 3.9337 1.0140 -0.9332 34 1 3.9330 0.8479 0.8390 35 1 2.4686 3.5464 -1.0348 36 1 3.7860 4.7091 -0.7506 37 1 2.5568 5.1531 -4.2701 38 1 2.6351 3.2872 1.6022 39 1 3.9872 4.4372 1.4707 40 1 7.3577 2.7318 4.2336 41 1 4.1047 -0.0466 4.5417 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001235656496.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:02:47 Heat of formation + Delta-G solvation = -53.615291 kcal Electronic energy + Delta-G solvation = -25624.509983 eV Core-core repulsion = 21753.833470 eV Total energy + Delta-G solvation = -3870.676513 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 308.140 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -50.07580 -49.96913 -40.47616 -39.09398 -37.47914 -35.33932 -34.73234 -32.92427 -31.54093 -29.84791 -29.18704 -26.84424 -25.13126 -23.99549 -23.83933 -22.41593 -20.94842 -20.60407 -18.64438 -18.37649 -17.52304 -17.48516 -16.93181 -16.83159 -16.58280 -16.43388 -15.99421 -15.97909 -15.51344 -15.26501 -14.97371 -14.77829 -14.54704 -14.25412 -14.16162 -13.81899 -13.62646 -13.40985 -13.19521 -12.97990 -12.91131 -12.81909 -12.57339 -12.47086 -12.37730 -12.19408 -12.03007 -11.89446 -11.60630 -11.26749 -11.19191 -10.56167 -10.01298 -9.85791 -8.91534 -8.15681 -6.24163 -0.63100 -0.11190 1.42267 1.43133 1.47008 1.54162 1.59331 2.37670 2.42727 2.53903 3.01005 3.17305 3.32938 3.35499 3.52961 3.64352 3.83111 4.07915 4.09510 4.22647 4.35857 4.38731 4.48669 4.59281 4.69570 4.80737 4.85287 4.86231 4.89099 4.92459 4.98904 5.05315 5.16468 5.25948 5.29335 5.41407 5.51095 5.54007 5.59929 5.71463 6.10253 6.30213 6.34117 6.61327 6.91231 7.44628 8.94440 Molecular weight = 308.14amu Principal moments of inertia in cm(-1) A = 0.013992 B = 0.004424 C = 0.003691 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2000.725673 B = 6327.817453 C = 7583.723062 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.111 4.111 3 C -0.144 4.144 4 C 0.069 3.931 5 N -0.534 5.534 6 C 0.206 3.794 7 C -0.514 4.514 8 H 0.058 0.942 9 C 0.006 3.994 10 N -0.933 5.933 11 Si 0.961 3.039 12 H -0.274 1.274 13 H -0.284 1.284 14 H -0.267 1.267 15 C 0.082 3.918 16 C -0.119 4.119 17 C 0.136 3.864 18 F -0.130 7.130 19 C -0.099 4.099 20 C 0.032 3.968 21 C 0.286 3.714 22 N -0.438 5.438 23 C -0.096 4.096 24 C 0.128 3.872 25 F -0.121 7.121 26 H 0.038 0.962 27 H 0.068 0.932 28 H 0.055 0.945 29 H 0.053 0.947 30 H 0.075 0.925 31 H 0.062 0.938 32 H 0.034 0.966 33 H 0.056 0.944 34 H 0.076 0.924 35 H -0.013 1.013 36 H -0.003 1.003 37 H 0.262 0.738 38 H 0.052 0.948 39 H 0.077 0.923 40 H 0.175 0.825 41 H 0.180 0.820 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.897 -8.259 15.738 17.796 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.149 4.149 3 C -0.183 4.183 4 C -0.059 4.059 5 N -0.257 5.257 6 C 0.080 3.920 7 C -0.553 4.553 8 H 0.076 0.924 9 C -0.192 4.192 10 N -0.573 5.573 11 Si 0.786 3.214 12 H -0.200 1.200 13 H -0.210 1.210 14 H -0.191 1.191 15 C -0.045 4.045 16 C -0.122 4.122 17 C 0.116 3.884 18 F -0.109 7.109 19 C -0.120 4.120 20 C 0.028 3.972 21 C -0.029 4.029 22 N -0.113 5.113 23 C -0.117 4.117 24 C 0.108 3.892 25 F -0.100 7.100 26 H 0.057 0.943 27 H 0.087 0.913 28 H 0.074 0.926 29 H 0.072 0.928 30 H 0.094 0.906 31 H 0.081 0.919 32 H 0.052 0.948 33 H 0.075 0.925 34 H 0.094 0.906 35 H 0.005 0.995 36 H 0.015 0.985 37 H 0.071 0.929 38 H 0.070 0.930 39 H 0.095 0.905 40 H 0.193 0.807 41 H 0.197 0.803 Dipole moment (debyes) X Y Z Total from point charges 2.171 -8.977 16.799 19.171 hybrid contribution -1.079 0.819 -1.789 2.244 sum 1.091 -8.158 15.010 17.119 Atomic orbital electron populations 1.21729 0.95493 1.01987 1.01211 1.21380 0.96213 0.95344 1.01977 1.22101 0.97462 0.98160 1.00595 1.22048 0.92840 0.89748 1.01239 1.62343 1.59497 1.03101 1.00755 1.19436 0.93032 0.91007 0.88546 1.21383 1.19848 1.22267 0.91771 0.92365 1.25782 0.95693 0.95132 1.02636 1.70070 1.30776 1.28447 1.28053 0.85509 0.79130 0.77745 0.79018 1.19992 1.20965 1.19094 1.20927 0.97366 0.98251 0.87995 1.20134 0.95686 0.97424 0.98934 1.16946 0.91032 0.86093 0.94355 1.91563 1.84631 1.51172 1.83496 1.21253 1.01849 0.94123 0.94749 1.15080 0.93222 0.94743 0.94186 1.25148 0.92715 0.92701 0.92361 1.81340 1.09221 1.09553 1.11194 1.21254 0.93330 1.01224 0.95859 1.16898 0.82353 0.93718 0.96226 1.91574 1.40038 1.88979 1.89368 0.94317 0.91283 0.92579 0.92821 0.90597 0.91908 0.94755 0.92549 0.90600 0.99507 0.98481 0.92869 0.93032 0.90504 0.80730 0.80287 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.61 9.91 71.98 0.71 -2.90 16 2 C -0.11 -3.04 5.87 30.59 0.18 -2.86 16 3 C -0.14 -4.96 3.62 30.59 0.11 -4.85 16 4 C 0.07 2.51 4.60 86.30 0.40 2.91 16 5 N -0.53 -21.85 4.67 -905.36 -4.23 -26.07 16 6 C 0.21 10.55 4.50 85.55 0.39 10.94 16 7 C -0.51 -28.58 8.49 25.60 0.22 -28.36 16 8 H 0.06 3.22 7.52 -2.91 -0.02 3.20 16 9 C 0.01 0.31 5.46 84.66 0.46 0.77 16 10 N -0.93 -55.36 13.29 21.45 0.28 -55.07 16 11 Si 0.96 44.09 29.54 68.60 2.03 46.12 16 12 H -0.27 -12.19 7.11 99.48 0.71 -11.49 16 13 H -0.28 -12.81 7.11 99.48 0.71 -12.10 16 14 H -0.27 -11.86 7.11 99.48 0.71 -11.15 16 15 C 0.08 2.75 4.63 85.56 0.40 3.15 16 16 C -0.12 -3.02 4.91 -19.72 -0.10 -3.12 16 17 C 0.14 3.12 7.23 22.33 0.16 3.29 16 18 F -0.13 -3.67 16.46 44.97 0.74 -2.93 16 19 C -0.10 -1.56 9.73 22.59 0.22 -1.34 16 20 C 0.03 0.45 5.73 -21.37 -0.12 0.33 16 21 C 0.29 4.66 15.33 88.33 1.35 6.02 16 22 N -0.44 -9.28 18.54 19.01 0.35 -8.93 16 23 C -0.10 -1.35 9.73 22.59 0.22 -1.13 16 24 C 0.13 2.62 5.87 22.33 0.13 2.75 16 25 F -0.12 -2.72 12.46 44.97 0.56 -2.16 16 26 H 0.04 1.05 8.14 -2.39 -0.02 1.03 16 27 H 0.07 1.39 8.14 -2.39 -0.02 1.38 16 28 H 0.06 1.30 8.14 -2.39 -0.02 1.28 16 29 H 0.05 1.52 8.14 -2.39 -0.02 1.50 16 30 H 0.08 1.78 7.64 -2.38 -0.02 1.76 16 31 H 0.06 2.07 4.92 -2.39 -0.01 2.05 16 32 H 0.03 1.46 6.48 -2.38 -0.02 1.44 16 33 H 0.06 2.31 7.26 -2.39 -0.02 2.29 16 34 H 0.08 2.33 5.38 -2.39 -0.01 2.31 16 35 H -0.01 -0.70 5.90 -2.39 -0.01 -0.71 16 36 H 0.00 -0.16 7.86 -2.39 -0.02 -0.18 16 37 H 0.26 14.74 8.31 -92.70 -0.77 13.97 16 38 H 0.05 1.70 5.67 -2.39 -0.01 1.69 16 39 H 0.08 2.70 7.37 -2.39 -0.02 2.68 16 40 H 0.18 1.93 8.06 -2.91 -0.02 1.91 16 41 H 0.18 1.54 8.06 -2.91 -0.02 1.52 16 Total: -1.00 -64.61 344.88 5.53 -59.08 By element: Atomic # 1 Polarization: 3.32 SS G_CDS: 1.06 Total: 4.38 kcal Atomic # 6 Polarization: -19.14 SS G_CDS: 4.73 Total: -14.41 kcal Atomic # 7 Polarization: -86.49 SS G_CDS: -3.59 Total: -90.07 kcal Atomic # 9 Polarization: -6.39 SS G_CDS: 1.30 Total: -5.09 kcal Atomic # 14 Polarization: 44.09 SS G_CDS: 2.03 Total: 46.12 kcal Total: -64.61 5.53 -59.08 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001235656496.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.464 kcal (2) G-P(sol) polarization free energy of solvation -64.611 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.146 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.531 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.080 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.615 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds