Wall clock time and date at job start Tue Mar 31 2020 09:23:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53004 * 109.47155 * 2 1 4 4 H 1.09004 * 109.47058 * 302.74582 * 3 2 1 5 5 C 1.50697 * 109.47419 * 182.74617 * 3 2 1 6 6 H 1.07998 * 119.99854 * 240.00155 * 5 3 2 7 7 C 1.37875 * 120.00079 * 59.99791 * 5 3 2 8 8 N 1.31511 * 120.00135 * 0.02562 * 7 5 3 9 9 Si 1.86795 * 120.00070 * 180.02562 * 7 5 3 10 10 H 1.48501 * 109.47340 * 0.02562 * 9 7 5 11 11 H 1.48502 * 109.47221 * 120.00132 * 9 7 5 12 12 H 1.48502 * 109.47160 * 240.00253 * 9 7 5 13 13 N 1.46897 * 109.46800 * 62.74453 * 3 2 1 14 14 C 1.46848 * 111.00182 * 190.71315 * 13 3 2 15 15 C 1.53031 * 109.52960 * 174.16036 * 14 13 3 16 16 C 1.53119 * 109.27828 * 59.17675 * 15 14 13 17 17 N 1.46499 * 109.52785 * 182.44102 * 16 15 14 18 18 C 1.34774 * 120.00133 * 274.69022 * 17 16 15 19 19 O 1.21278 * 120.00213 * 359.97438 * 18 17 16 20 20 C 1.50702 * 119.99624 * 179.97438 * 18 17 16 21 21 F 1.39905 * 109.46629 * 179.97438 * 20 18 17 22 22 F 1.39896 * 109.47405 * 299.99348 * 20 18 17 23 23 F 1.39896 * 109.47627 * 59.99864 * 20 18 17 24 24 C 1.53125 * 109.16072 * 302.35010 * 16 15 14 25 25 C 1.46847 * 111.00261 * 66.50546 * 13 3 2 26 26 H 1.08996 * 109.47175 * 174.67112 * 1 2 3 27 27 H 1.09008 * 109.46838 * 294.66722 * 1 2 3 28 28 H 1.08999 * 109.47856 * 54.66660 * 1 2 3 29 29 H 1.08996 * 109.47814 * 120.00178 * 2 1 3 30 30 H 1.09001 * 109.46655 * 240.01063 * 2 1 3 31 31 H 0.96993 * 120.00510 * 179.97438 * 8 7 5 32 32 H 1.09003 * 109.46177 * 294.18007 * 14 13 3 33 33 H 1.09008 * 109.46127 * 54.14459 * 14 13 3 34 34 H 1.09008 * 109.50384 * 299.24224 * 15 14 13 35 35 H 1.08999 * 109.50937 * 179.11898 * 15 14 13 36 36 H 1.09002 * 109.51975 * 62.25371 * 16 15 14 37 37 H 0.97004 * 119.99196 * 94.68074 * 17 16 15 38 38 H 1.08993 * 109.50285 * 297.70865 * 24 16 15 39 39 H 1.09005 * 109.50255 * 177.59167 * 24 16 15 40 40 H 1.09005 * 109.45569 * 305.85071 * 25 13 3 41 41 H 1.08994 * 109.46123 * 65.81927 * 25 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6370 1.9704 -0.8644 5 6 3.5454 1.4431 -0.0681 6 1 4.1216 1.8980 0.7241 7 6 4.1872 0.8630 -1.1416 8 7 3.4856 0.3095 -2.1064 9 14 6.0533 0.8631 -1.2256 10 1 6.6028 1.5429 -0.0252 11 1 6.5469 -0.5368 -1.2705 12 1 6.4937 1.5827 -2.4477 13 7 1.6052 2.1155 1.2312 14 6 1.8530 3.5610 1.1565 15 6 1.2581 4.2464 2.3887 16 6 1.9007 3.6640 3.6507 17 7 1.2936 4.2748 4.8358 18 6 1.7616 5.4489 5.3035 19 8 2.6857 5.9997 4.7436 20 6 1.1366 6.0774 6.5223 21 9 1.7883 7.2809 6.8125 22 9 -0.2175 6.3276 6.2756 23 9 1.2592 5.2071 7.6107 24 6 1.6697 2.1506 3.6797 25 6 2.2528 1.5261 2.4100 26 1 -0.3633 -1.0232 -0.0954 27 1 -0.3633 0.4289 0.9340 28 1 -0.3635 0.5943 -0.8383 29 1 1.8934 -0.5138 0.8899 30 1 1.8932 -0.5137 -0.8901 31 1 3.9371 -0.0984 -2.8618 32 1 2.9270 3.7441 1.1221 33 1 1.3872 3.9634 0.2568 34 1 0.1819 4.0753 2.4163 35 1 1.4559 5.3172 2.3407 36 1 2.9712 3.8690 3.6421 37 1 0.5546 3.8341 5.2838 38 1 0.6001 1.9466 3.7276 39 1 2.1616 1.7241 4.5540 40 1 2.0772 0.4503 2.4209 41 1 3.3248 1.7186 2.3698 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255173603.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:23:10 Heat of formation + Delta-G solvation = -190.431060 kcal Electronic energy + Delta-G solvation = -26640.798470 eV Core-core repulsion = 22333.419955 eV Total energy + Delta-G solvation = -4307.378514 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 308.145 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -50.60260 -48.13568 -48.08321 -40.30850 -38.43838 -35.78946 -33.57568 -31.73059 -30.64668 -30.16913 -27.99389 -26.30695 -23.85453 -22.94183 -22.34595 -21.45712 -20.16155 -19.41703 -19.04480 -18.96304 -18.69607 -16.54401 -16.43093 -15.75842 -15.40310 -15.12388 -14.83152 -14.74760 -14.50255 -14.38917 -14.21736 -14.20177 -14.13353 -13.67722 -13.40988 -13.31092 -13.10570 -12.74297 -12.29233 -11.83362 -11.58082 -11.23232 -11.12421 -10.94343 -10.91319 -10.72052 -10.58028 -10.45859 -10.35117 -9.91603 -9.69741 -9.44964 -9.33672 -9.11950 -8.41323 -7.20581 -6.03853 -4.17172 1.57091 1.65484 2.80201 3.23002 3.32321 3.35361 3.41535 3.82936 3.84112 4.36068 4.79393 4.90795 5.04392 5.21263 5.33584 5.55472 5.60596 5.84969 5.93741 6.05156 6.08663 6.21010 6.26888 6.40241 6.44189 6.51872 6.63533 6.65813 6.71899 6.83400 7.05551 7.13566 7.30032 7.37346 7.55038 7.71586 7.90491 8.09418 8.24542 8.40596 8.92596 9.51114 10.95701 Molecular weight = 308.15amu Principal moments of inertia in cm(-1) A = 0.021895 B = 0.003425 C = 0.003155 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1278.544906 B = 8173.204596 C = 8871.463673 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.110 4.110 3 C 0.214 3.786 4 H 0.039 0.961 5 C -0.545 4.545 6 H 0.057 0.943 7 C 0.070 3.930 8 N -0.884 5.884 9 Si 0.886 3.114 10 H -0.275 1.275 11 H -0.284 1.284 12 H -0.284 1.284 13 N -0.534 5.534 14 C 0.066 3.934 15 C -0.124 4.124 16 C 0.142 3.858 17 N -0.691 5.691 18 C 0.481 3.519 19 O -0.477 6.477 20 C 0.449 3.551 21 F -0.155 7.155 22 F -0.168 7.168 23 F -0.169 7.169 24 C -0.123 4.123 25 C 0.064 3.936 26 H 0.024 0.976 27 H 0.045 0.955 28 H 0.039 0.961 29 H 0.033 0.967 30 H 0.091 0.909 31 H 0.261 0.739 32 H 0.039 0.961 33 H 0.070 0.930 34 H 0.070 0.930 35 H 0.062 0.938 36 H 0.092 0.908 37 H 0.408 0.592 38 H 0.073 0.927 39 H 0.065 0.935 40 H 0.078 0.922 41 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.306 6.379 15.098 17.945 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.148 4.148 3 C 0.108 3.892 4 H 0.057 0.943 5 C -0.584 4.584 6 H 0.076 0.924 7 C -0.133 4.133 8 N -0.523 5.523 9 Si 0.714 3.286 10 H -0.199 1.199 11 H -0.210 1.210 12 H -0.210 1.210 13 N -0.258 5.258 14 C -0.063 4.063 15 C -0.163 4.163 16 C 0.039 3.961 17 N -0.342 5.342 18 C 0.258 3.742 19 O -0.349 6.349 20 C 0.391 3.609 21 F -0.137 7.137 22 F -0.150 7.150 23 F -0.151 7.151 24 C -0.161 4.161 25 C -0.065 4.065 26 H 0.043 0.957 27 H 0.064 0.936 28 H 0.058 0.942 29 H 0.051 0.949 30 H 0.110 0.890 31 H 0.071 0.929 32 H 0.057 0.943 33 H 0.088 0.912 34 H 0.089 0.911 35 H 0.081 0.919 36 H 0.111 0.889 37 H 0.243 0.757 38 H 0.091 0.909 39 H 0.084 0.916 40 H 0.097 0.903 41 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -7.118 6.618 14.560 17.506 hybrid contribution 1.469 0.052 0.287 1.498 sum -5.649 6.670 14.847 17.229 Atomic orbital electron populations 1.21690 0.98827 0.98333 1.00509 1.21591 0.92178 0.99098 1.01966 1.19285 0.92790 0.91051 0.86076 0.94339 1.21767 0.92665 1.37569 1.06396 0.92446 1.24894 0.97915 0.94979 0.95516 1.69874 1.34920 1.37681 1.09789 0.86644 0.86251 0.77728 0.78013 1.19933 1.20996 1.21006 1.62447 1.57319 1.01688 1.04354 1.21795 0.98919 0.89809 0.95814 1.22013 1.00892 0.99381 0.94005 1.21454 0.98565 0.93424 0.82627 1.46174 1.36610 1.20717 1.30729 1.20230 0.85350 0.83677 0.84975 1.90897 1.26616 1.60892 1.56482 1.20423 0.77149 0.78160 0.85211 1.93264 1.80888 1.45725 1.93776 1.93262 1.33193 1.94414 1.94117 1.93258 1.95612 1.69053 1.57169 1.21971 1.02444 0.92132 0.99554 1.21849 0.96954 0.99185 0.88473 0.95667 0.93561 0.94215 0.94879 0.89029 0.92913 0.94310 0.91200 0.91124 0.91905 0.88950 0.75682 0.90855 0.91633 0.90349 0.93921 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.59 9.71 37.16 0.36 -2.22 16 2 C -0.11 -2.44 5.12 -26.73 -0.14 -2.57 16 3 C 0.21 4.91 1.72 -68.87 -0.12 4.79 16 4 H 0.04 1.00 7.97 -51.93 -0.41 0.58 16 5 C -0.54 -13.80 7.24 -34.44 -0.25 -14.05 16 6 H 0.06 1.47 5.84 -52.49 -0.31 1.16 16 7 C 0.07 1.83 5.30 -17.82 -0.09 1.73 16 8 N -0.88 -24.04 11.30 55.43 0.63 -23.41 16 9 Si 0.89 20.61 29.54 -169.99 -5.02 15.59 16 10 H -0.27 -6.39 7.11 56.52 0.40 -5.98 16 11 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 12 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 13 N -0.53 -10.05 4.05 -228.08 -0.92 -10.98 16 14 C 0.07 1.17 5.20 -3.84 -0.02 1.15 16 15 C -0.12 -1.76 5.67 -26.65 -0.15 -1.91 16 16 C 0.14 1.84 2.52 -67.81 -0.17 1.67 16 17 N -0.69 -7.21 5.08 -53.68 -0.27 -7.48 16 18 C 0.48 5.77 7.33 -10.99 -0.08 5.69 16 19 O -0.48 -7.48 16.28 5.56 0.09 -7.39 16 20 C 0.45 4.59 3.43 36.01 0.12 4.72 16 21 F -0.16 -1.80 16.92 2.25 0.04 -1.77 16 22 F -0.17 -1.61 17.30 2.25 0.04 -1.57 16 23 F -0.17 -1.60 17.30 2.25 0.04 -1.56 16 24 C -0.12 -1.55 5.57 -26.65 -0.15 -1.70 16 25 C 0.06 1.10 4.78 -3.83 -0.02 1.08 16 26 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 27 H 0.05 0.82 7.84 -51.92 -0.41 0.42 16 28 H 0.04 0.76 8.14 -51.93 -0.42 0.34 16 29 H 0.03 0.71 6.33 -51.93 -0.33 0.39 16 30 H 0.09 2.31 6.00 -51.93 -0.31 2.00 16 31 H 0.26 6.81 8.31 -40.82 -0.34 6.48 16 32 H 0.04 0.76 7.34 -51.93 -0.38 0.38 16 33 H 0.07 1.26 8.01 -51.92 -0.42 0.85 16 34 H 0.07 0.95 8.14 -51.92 -0.42 0.52 16 35 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 36 H 0.09 1.39 7.58 -51.93 -0.39 0.99 16 37 H 0.41 3.08 8.61 -40.82 -0.35 2.73 16 38 H 0.07 0.86 8.14 -51.93 -0.42 0.43 16 39 H 0.07 0.73 8.14 -51.93 -0.42 0.30 16 40 H 0.08 1.38 6.19 -51.93 -0.32 1.06 16 41 H 0.04 0.82 6.34 -51.93 -0.33 0.49 16 LS Contribution 337.90 15.07 5.09 5.09 Total: -1.00 -27.28 337.90 -6.63 -33.91 By element: Atomic # 1 Polarization: 6.83 SS G_CDS: -5.63 Total: 1.19 kcal Atomic # 6 Polarization: -0.93 SS G_CDS: -0.70 Total: -1.64 kcal Atomic # 7 Polarization: -41.30 SS G_CDS: -0.57 Total: -41.87 kcal Atomic # 8 Polarization: -7.48 SS G_CDS: 0.09 Total: -7.39 kcal Atomic # 9 Polarization: -5.01 SS G_CDS: 0.12 Total: -4.89 kcal Atomic # 14 Polarization: 20.61 SS G_CDS: -5.02 Total: 15.59 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -27.28 -6.63 -33.91 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255173603.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -156.523 kcal (2) G-P(sol) polarization free energy of solvation -27.278 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -183.801 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.630 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.908 kcal (6) G-S(sol) free energy of system = (1) + (5) -190.431 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds