Wall clock time and date at job start Tue Mar 31 2020 09:23:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53004 * 109.47155 * 2 1 4 4 H 1.09004 * 109.47058 * 302.74582 * 3 2 1 5 5 C 1.50697 * 109.47419 * 182.74617 * 3 2 1 6 6 H 1.07998 * 119.99854 * 240.00155 * 5 3 2 7 7 C 1.37875 * 120.00079 * 59.99791 * 5 3 2 8 8 N 1.31511 * 120.00135 * 0.02562 * 7 5 3 9 9 Si 1.86795 * 120.00070 * 180.02562 * 7 5 3 10 10 H 1.48501 * 109.47340 * 0.02562 * 9 7 5 11 11 H 1.48502 * 109.47221 * 120.00132 * 9 7 5 12 12 H 1.48502 * 109.47160 * 240.00253 * 9 7 5 13 13 N 1.46897 * 109.46800 * 62.74453 * 3 2 1 14 14 C 1.46848 * 111.00182 * 190.71315 * 13 3 2 15 15 C 1.53031 * 109.52960 * 174.16036 * 14 13 3 16 16 C 1.53119 * 109.27828 * 59.17675 * 15 14 13 17 17 N 1.46499 * 109.52785 * 182.44102 * 16 15 14 18 18 C 1.34774 * 120.00133 * 274.69022 * 17 16 15 19 19 O 1.21278 * 120.00213 * 359.97438 * 18 17 16 20 20 C 1.50702 * 119.99624 * 179.97438 * 18 17 16 21 21 F 1.39905 * 109.46629 * 179.97438 * 20 18 17 22 22 F 1.39896 * 109.47405 * 299.99348 * 20 18 17 23 23 F 1.39896 * 109.47627 * 59.99864 * 20 18 17 24 24 C 1.53125 * 109.16072 * 302.35010 * 16 15 14 25 25 C 1.46847 * 111.00261 * 66.50546 * 13 3 2 26 26 H 1.08996 * 109.47175 * 174.67112 * 1 2 3 27 27 H 1.09008 * 109.46838 * 294.66722 * 1 2 3 28 28 H 1.08999 * 109.47856 * 54.66660 * 1 2 3 29 29 H 1.08996 * 109.47814 * 120.00178 * 2 1 3 30 30 H 1.09001 * 109.46655 * 240.01063 * 2 1 3 31 31 H 0.96993 * 120.00510 * 179.97438 * 8 7 5 32 32 H 1.09003 * 109.46177 * 294.18007 * 14 13 3 33 33 H 1.09008 * 109.46127 * 54.14459 * 14 13 3 34 34 H 1.09008 * 109.50384 * 299.24224 * 15 14 13 35 35 H 1.08999 * 109.50937 * 179.11898 * 15 14 13 36 36 H 1.09002 * 109.51975 * 62.25371 * 16 15 14 37 37 H 0.97004 * 119.99196 * 94.68074 * 17 16 15 38 38 H 1.08993 * 109.50285 * 297.70865 * 24 16 15 39 39 H 1.09005 * 109.50255 * 177.59167 * 24 16 15 40 40 H 1.09005 * 109.45569 * 305.85071 * 25 13 3 41 41 H 1.08994 * 109.46123 * 65.81927 * 25 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6370 1.9704 -0.8644 5 6 3.5454 1.4431 -0.0681 6 1 4.1216 1.8980 0.7241 7 6 4.1872 0.8630 -1.1416 8 7 3.4856 0.3095 -2.1064 9 14 6.0533 0.8631 -1.2256 10 1 6.6028 1.5429 -0.0252 11 1 6.5469 -0.5368 -1.2705 12 1 6.4937 1.5827 -2.4477 13 7 1.6052 2.1155 1.2312 14 6 1.8530 3.5610 1.1565 15 6 1.2581 4.2464 2.3887 16 6 1.9007 3.6640 3.6507 17 7 1.2936 4.2748 4.8358 18 6 1.7616 5.4489 5.3035 19 8 2.6857 5.9997 4.7436 20 6 1.1366 6.0774 6.5223 21 9 1.7883 7.2809 6.8125 22 9 -0.2175 6.3276 6.2756 23 9 1.2592 5.2071 7.6107 24 6 1.6697 2.1506 3.6797 25 6 2.2528 1.5261 2.4100 26 1 -0.3633 -1.0232 -0.0954 27 1 -0.3633 0.4289 0.9340 28 1 -0.3635 0.5943 -0.8383 29 1 1.8934 -0.5138 0.8899 30 1 1.8932 -0.5137 -0.8901 31 1 3.9371 -0.0984 -2.8618 32 1 2.9270 3.7441 1.1221 33 1 1.3872 3.9634 0.2568 34 1 0.1819 4.0753 2.4163 35 1 1.4559 5.3172 2.3407 36 1 2.9712 3.8690 3.6421 37 1 0.5546 3.8341 5.2838 38 1 0.6001 1.9466 3.7276 39 1 2.1616 1.7241 4.5540 40 1 2.0772 0.4503 2.4209 41 1 3.3248 1.7186 2.3698 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001255173603.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:23:10 Heat of formation + Delta-G solvation = -207.824298 kcal Electronic energy + Delta-G solvation = -26641.552697 eV Core-core repulsion = 22333.419955 eV Total energy + Delta-G solvation = -4308.132742 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 308.145 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -51.42354 -48.93273 -48.91878 -41.37522 -39.82951 -37.14711 -35.07462 -33.52789 -31.96027 -31.53151 -29.11699 -27.98468 -25.39701 -24.33656 -23.73158 -22.49780 -21.40996 -20.92209 -20.09161 -19.85647 -19.68948 -18.23534 -17.61920 -17.13029 -16.61796 -16.36111 -16.00826 -15.67154 -15.62694 -15.52384 -15.30795 -15.06213 -15.02920 -15.01791 -14.83974 -14.53023 -14.50145 -14.30002 -13.73055 -13.36023 -13.20572 -12.95762 -12.71220 -12.58003 -12.37050 -12.18055 -12.04843 -11.81943 -11.63502 -11.53183 -11.47709 -11.03816 -10.92817 -10.45468 -10.38771 -8.90582 -8.02371 -6.24161 0.61400 0.73083 1.34692 1.39242 1.47305 1.94650 2.39978 2.53465 2.97884 3.01958 3.16364 3.41239 3.72093 3.85179 4.17223 4.34840 4.46412 4.56461 4.62162 4.69270 4.80456 4.87404 4.95401 4.97507 5.02799 5.06947 5.16299 5.23615 5.34212 5.40095 5.49172 5.55882 5.67820 5.83855 5.88331 6.11735 6.21788 6.40127 6.52366 6.70517 6.97987 7.46970 8.92417 Molecular weight = 308.15amu Principal moments of inertia in cm(-1) A = 0.021895 B = 0.003425 C = 0.003155 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1278.544906 B = 8173.204596 C = 8871.463673 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.104 4.104 3 C 0.219 3.781 4 H 0.003 0.997 5 C -0.549 4.549 6 H 0.049 0.951 7 C 0.024 3.976 8 N -0.909 5.909 9 Si 0.940 3.060 10 H -0.275 1.275 11 H -0.279 1.279 12 H -0.284 1.284 13 N -0.523 5.523 14 C 0.067 3.933 15 C -0.112 4.112 16 C 0.149 3.851 17 N -0.673 5.673 18 C 0.482 3.518 19 O -0.518 6.518 20 C 0.464 3.536 21 F -0.163 7.163 22 F -0.160 7.160 23 F -0.160 7.160 24 C -0.108 4.108 25 C 0.063 3.937 26 H 0.042 0.958 27 H 0.062 0.938 28 H 0.030 0.970 29 H 0.035 0.965 30 H 0.058 0.942 31 H 0.260 0.740 32 H 0.010 0.990 33 H 0.059 0.941 34 H 0.089 0.911 35 H 0.061 0.939 36 H 0.070 0.930 37 H 0.426 0.574 38 H 0.096 0.904 39 H 0.090 0.910 40 H 0.075 0.925 41 H 0.015 0.985 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.560 6.268 17.337 20.326 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.142 4.142 3 C 0.112 3.888 4 H 0.021 0.979 5 C -0.589 4.589 6 H 0.067 0.933 7 C -0.176 4.176 8 N -0.549 5.549 9 Si 0.767 3.233 10 H -0.200 1.200 11 H -0.205 1.205 12 H -0.210 1.210 13 N -0.247 5.247 14 C -0.063 4.063 15 C -0.150 4.150 16 C 0.045 3.955 17 N -0.325 5.325 18 C 0.260 3.740 19 O -0.393 6.393 20 C 0.406 3.594 21 F -0.144 7.144 22 F -0.141 7.141 23 F -0.141 7.141 24 C -0.146 4.146 25 C -0.066 4.066 26 H 0.061 0.939 27 H 0.081 0.919 28 H 0.049 0.951 29 H 0.054 0.946 30 H 0.076 0.924 31 H 0.070 0.930 32 H 0.029 0.971 33 H 0.078 0.922 34 H 0.107 0.893 35 H 0.080 0.920 36 H 0.089 0.911 37 H 0.266 0.734 38 H 0.115 0.885 39 H 0.109 0.891 40 H 0.093 0.907 41 H 0.034 0.966 Dipole moment (debyes) X Y Z Total from point charges -8.406 6.494 16.836 19.907 hybrid contribution 1.854 0.102 -0.408 1.901 sum -6.553 6.597 16.428 18.877 Atomic orbital electron populations 1.21550 0.96075 0.99500 1.00977 1.21415 0.94569 0.97868 1.00384 1.19056 0.91294 0.91662 0.86823 0.97942 1.22029 0.94204 1.36713 1.05910 0.93274 1.25532 1.01392 0.95112 0.95525 1.69994 1.36125 1.38525 1.10221 0.85795 0.82168 0.77697 0.77674 1.19955 1.20517 1.21030 1.62418 1.56851 1.02002 1.03448 1.21786 0.97414 0.89494 0.97570 1.21867 1.01647 0.98797 0.92718 1.21163 0.97445 0.93843 0.83011 1.45895 1.36657 1.20192 1.29726 1.20474 0.84755 0.83581 0.85143 1.90892 1.28455 1.62029 1.57897 1.19932 0.77176 0.77764 0.84542 1.93255 1.81178 1.46237 1.93750 1.93288 1.32411 1.94342 1.94068 1.93285 1.95593 1.68709 1.56558 1.21843 1.03809 0.91221 0.97746 1.21886 0.95646 0.99360 0.89662 0.93872 0.91891 0.95099 0.94627 0.92352 0.93011 0.97118 0.92224 0.89263 0.92043 0.91146 0.73450 0.88503 0.89130 0.90709 0.96623 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.53 9.71 71.98 0.70 -3.83 16 2 C -0.10 -4.63 5.12 30.59 0.16 -4.47 16 3 C 0.22 10.29 1.72 44.17 0.08 10.37 16 4 H 0.00 0.14 7.97 -2.39 -0.02 0.12 16 5 C -0.55 -28.64 7.24 25.60 0.19 -28.46 16 6 H 0.05 2.60 5.84 -2.91 -0.02 2.58 16 7 C 0.02 1.31 5.30 84.65 0.45 1.76 16 8 N -0.91 -50.77 11.30 21.45 0.24 -50.53 16 9 Si 0.94 43.11 29.54 68.60 2.03 45.14 16 10 H -0.27 -12.49 7.11 99.48 0.71 -11.79 16 11 H -0.28 -12.55 7.11 99.48 0.71 -11.84 16 12 H -0.28 -12.98 7.11 99.48 0.71 -12.27 16 13 N -0.52 -19.61 4.05 -875.51 -3.55 -23.16 16 14 C 0.07 2.39 5.20 86.32 0.45 2.84 16 15 C -0.11 -3.00 5.67 30.64 0.17 -2.82 16 16 C 0.15 3.56 2.52 45.07 0.11 3.67 16 17 N -0.67 -11.99 5.08 -442.15 -2.25 -14.24 16 18 C 0.48 10.57 7.33 87.66 0.64 11.21 16 19 O -0.52 -15.80 16.28 -3.02 -0.05 -15.85 16 20 C 0.46 8.34 3.43 71.24 0.24 8.59 16 21 F -0.16 -3.51 16.92 44.97 0.76 -2.75 16 22 F -0.16 -2.57 17.30 44.97 0.78 -1.79 16 23 F -0.16 -2.53 17.30 44.97 0.78 -1.76 16 24 C -0.11 -2.40 5.57 30.65 0.17 -2.23 16 25 C 0.06 2.10 4.78 86.32 0.41 2.51 16 26 H 0.04 1.41 8.14 -2.39 -0.02 1.39 16 27 H 0.06 2.08 7.84 -2.38 -0.02 2.07 16 28 H 0.03 1.16 8.14 -2.39 -0.02 1.14 16 29 H 0.04 1.53 6.33 -2.39 -0.02 1.52 16 30 H 0.06 3.01 6.00 -2.39 -0.01 3.00 16 31 H 0.26 13.93 8.31 -92.71 -0.77 13.16 16 32 H 0.01 0.43 7.34 -2.39 -0.02 0.42 16 33 H 0.06 2.22 8.01 -2.38 -0.02 2.20 16 34 H 0.09 2.11 8.14 -2.38 -0.02 2.09 16 35 H 0.06 1.70 8.14 -2.39 -0.02 1.68 16 36 H 0.07 2.06 7.58 -2.39 -0.02 2.05 16 37 H 0.43 4.61 8.61 -92.71 -0.80 3.81 16 38 H 0.10 1.79 8.14 -2.39 -0.02 1.77 16 39 H 0.09 1.65 8.14 -2.38 -0.02 1.63 16 40 H 0.07 2.54 6.19 -2.38 -0.01 2.52 16 41 H 0.02 0.60 6.34 -2.39 -0.02 0.59 16 Total: -1.00 -60.76 337.90 2.78 -57.98 By element: Atomic # 1 Polarization: 7.56 SS G_CDS: 0.27 Total: 7.83 kcal Atomic # 6 Polarization: -4.65 SS G_CDS: 3.77 Total: -0.88 kcal Atomic # 7 Polarization: -82.38 SS G_CDS: -5.55 Total: -87.93 kcal Atomic # 8 Polarization: -15.80 SS G_CDS: -0.05 Total: -15.85 kcal Atomic # 9 Polarization: -8.61 SS G_CDS: 2.32 Total: -6.29 kcal Atomic # 14 Polarization: 43.11 SS G_CDS: 2.03 Total: 45.14 kcal Total: -60.76 2.78 -57.98 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255173603.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -149.846 kcal (2) G-P(sol) polarization free energy of solvation -60.758 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -210.604 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.780 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.979 kcal (6) G-S(sol) free energy of system = (1) + (5) -207.824 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds