Wall clock time and date at job start Tue Mar 31 2020 09:26:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52998 * 109.47061 * 2 1 4 4 H 1.09005 * 109.47435 * 303.19276 * 3 2 1 5 5 C 1.50699 * 109.47380 * 183.19389 * 3 2 1 6 6 H 1.08003 * 119.99852 * 245.43296 * 5 3 2 7 7 C 1.37881 * 120.00349 * 65.42830 * 5 3 2 8 8 N 1.31519 * 119.99523 * 7.56281 * 7 5 3 9 9 Si 1.86789 * 120.00310 * 187.56240 * 7 5 3 10 10 H 1.48505 * 109.47341 * 84.99122 * 9 7 5 11 11 H 1.48503 * 109.47486 * 204.99257 * 9 7 5 12 12 H 1.48505 * 109.47199 * 324.99380 * 9 7 5 13 13 N 1.46497 * 109.47439 * 63.19153 * 3 2 1 14 14 C 1.34772 * 120.00320 * 275.00467 * 13 3 2 15 15 O 1.21596 * 119.99779 * 359.97438 * 14 13 3 16 16 N 1.34777 * 120.00677 * 179.97438 * 14 13 3 17 17 C 1.40151 * 120.00491 * 184.42197 * 16 14 13 18 18 C 1.38833 * 120.01097 * 323.60810 * 17 16 14 19 19 C 1.38096 * 119.98704 * 179.79420 * 18 17 16 20 20 C 1.38715 * 120.01165 * 0.48431 * 19 18 17 21 21 O 1.35983 * 119.98647 * 179.72259 * 20 19 18 22 22 C 1.42906 * 116.99829 * 0.02667 * 21 20 19 23 23 O 1.42897 * 109.47100 * 74.99712 * 22 21 20 24 24 C 1.42893 * 114.00108 * 74.99938 * 23 22 21 25 25 C 1.38718 * 120.03039 * 359.74774 * 20 19 18 26 26 C 1.38096 * 120.01047 * 0.02562 * 25 20 19 27 27 H 1.09000 * 109.47010 * 299.99784 * 1 2 3 28 28 H 1.08995 * 109.47415 * 59.99651 * 1 2 3 29 29 H 1.08998 * 109.46906 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.47010 * 240.00216 * 2 1 3 31 31 H 1.08995 * 109.47415 * 120.00349 * 2 1 3 32 32 H 0.97002 * 119.99629 * 179.97438 * 8 7 5 33 33 H 0.97001 * 120.00124 * 94.99719 * 13 3 2 34 34 H 0.96998 * 119.99575 * 4.41301 * 16 14 13 35 35 H 1.08004 * 120.00788 * 0.02740 * 18 17 16 36 36 H 1.08008 * 119.99548 * 180.23212 * 19 18 17 37 37 H 1.08995 * 109.46626 * 195.00274 * 22 21 20 38 38 H 1.09008 * 109.46645 * 314.99459 * 22 21 20 39 39 H 1.08997 * 109.47147 * 300.00098 * 24 23 22 40 40 H 1.09005 * 109.47194 * 59.99548 * 24 23 22 41 41 H 1.08998 * 109.47463 * 179.97438 * 24 23 22 42 42 H 1.07993 * 119.99194 * 179.97438 * 25 20 19 43 43 H 1.07992 * 120.00603 * 179.97438 * 26 25 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6307 1.9726 -0.8600 5 6 3.5449 1.4433 -0.0792 6 1 4.1290 1.8166 0.7491 7 6 4.1762 0.9674 -1.2088 8 7 3.4704 0.6522 -2.2729 9 14 6.0336 0.7704 -1.2279 10 1 6.3979 -0.5451 -0.6431 11 1 6.5247 0.8430 -2.6275 12 1 6.6548 1.8567 -0.4283 13 7 1.6155 2.1106 1.2327 14 6 0.3954 2.6784 1.3057 15 8 -0.3529 2.6366 0.3482 16 7 0.0046 3.2926 2.4399 17 6 -1.2966 3.8017 2.5487 18 6 -1.9135 4.3726 1.4438 19 6 -3.1973 4.8702 1.5504 20 6 -3.8667 4.8088 2.7638 21 8 -5.1287 5.3040 2.8697 22 6 -5.7035 5.8725 1.6913 23 8 -6.0871 4.8267 0.7962 24 6 -7.2714 4.1305 1.1894 25 6 -3.2491 4.2428 3.8695 26 6 -1.9671 3.7406 3.7629 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 0.5139 -0.8899 29 1 -0.3633 -1.0277 0.0005 30 1 1.8933 -0.5138 -0.8900 31 1 1.8934 -0.5139 0.8899 32 1 3.9146 0.3178 -3.0678 33 1 2.2125 2.1442 1.9965 34 1 0.6240 3.3823 3.1810 35 1 -1.3910 4.4242 0.5000 36 1 -3.6788 5.3111 0.6899 37 1 -6.5811 6.4594 1.9620 38 1 -4.9714 6.5170 1.2046 39 1 -7.1177 3.6760 2.1681 40 1 -8.1047 4.8313 1.2412 41 1 -7.4956 3.3534 0.4587 42 1 -3.7706 4.1956 4.8139 43 1 -1.4862 3.3004 4.6238 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001352935276.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:26:39 Heat of formation + Delta-G solvation = -87.884038 kcal Electronic energy + Delta-G solvation = -25308.342881 eV Core-core repulsion = 21547.267880 eV Total energy + Delta-G solvation = -3761.075001 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 308.157 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.48326 -39.65530 -38.02560 -36.63443 -35.13900 -33.81966 -32.32301 -30.95649 -30.87112 -28.70643 -27.77456 -26.76370 -25.33504 -23.25696 -22.79341 -21.90222 -20.53358 -19.52439 -18.45495 -18.20550 -17.41444 -17.06039 -16.56265 -15.95950 -15.61055 -15.06283 -14.96824 -14.54220 -14.23989 -14.08431 -13.89099 -13.51471 -13.40782 -13.08973 -12.74261 -12.65015 -12.30652 -12.12172 -11.71205 -11.46419 -11.35180 -11.34988 -11.01088 -10.92204 -10.77633 -10.37596 -10.31311 -10.19682 -9.78457 -9.52385 -9.28195 -9.07498 -8.82086 -8.49455 -7.91428 -7.45839 -6.14113 -4.20206 1.44705 1.56482 3.10131 3.25011 3.26605 3.32237 3.35373 3.46285 3.74771 4.09979 4.33349 4.67239 4.81522 4.97194 5.02700 5.05428 5.08097 5.17389 5.19181 5.40297 5.45891 5.49591 5.72099 6.01004 6.13211 6.39190 6.44397 6.51970 6.53214 6.58833 6.63779 6.69243 7.01767 7.07220 7.15021 7.33976 7.36355 7.44720 7.47203 7.65702 7.83854 7.97915 8.10694 8.76918 8.87553 9.29448 9.47709 10.93929 Molecular weight = 308.16amu Principal moments of inertia in cm(-1) A = 0.026306 B = 0.002779 C = 0.002666 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1064.147735 B =10072.553400 C =10500.741928 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.121 4.121 3 C 0.285 3.715 4 H 0.056 0.944 5 C -0.537 4.537 6 H 0.061 0.939 7 C 0.069 3.931 8 N -0.880 5.880 9 Si 0.899 3.101 10 H -0.279 1.279 11 H -0.286 1.286 12 H -0.275 1.275 13 N -0.719 5.719 14 C 0.692 3.308 15 O -0.577 6.577 16 N -0.698 5.698 17 C 0.148 3.852 18 C -0.081 4.081 19 C -0.174 4.174 20 C 0.098 3.902 21 O -0.336 6.336 22 C 0.212 3.788 23 O -0.393 6.393 24 C 0.030 3.970 25 C -0.133 4.133 26 C -0.120 4.120 27 H 0.039 0.961 28 H 0.052 0.948 29 H 0.021 0.979 30 H 0.081 0.919 31 H 0.033 0.967 32 H 0.265 0.735 33 H 0.385 0.615 34 H 0.401 0.599 35 H 0.145 0.855 36 H 0.131 0.869 37 H 0.101 0.899 38 H 0.101 0.899 39 H 0.049 0.951 40 H 0.043 0.957 41 H 0.087 0.913 42 H 0.128 0.872 43 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.610 8.812 11.750 21.433 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.160 4.160 3 C 0.183 3.817 4 H 0.074 0.926 5 C -0.575 4.575 6 H 0.079 0.921 7 C -0.135 4.135 8 N -0.516 5.516 9 Si 0.726 3.274 10 H -0.204 1.204 11 H -0.212 1.212 12 H -0.200 1.200 13 N -0.370 5.370 14 C 0.393 3.607 15 O -0.454 6.454 16 N -0.346 5.346 17 C 0.052 3.948 18 C -0.101 4.101 19 C -0.193 4.193 20 C 0.053 3.947 21 O -0.252 6.252 22 C 0.098 3.902 23 O -0.312 6.312 24 C -0.066 4.066 25 C -0.152 4.152 26 C -0.141 4.141 27 H 0.058 0.942 28 H 0.071 0.929 29 H 0.040 0.960 30 H 0.099 0.901 31 H 0.052 0.948 32 H 0.075 0.925 33 H 0.217 0.783 34 H 0.235 0.765 35 H 0.163 0.837 36 H 0.149 0.851 37 H 0.119 0.881 38 H 0.119 0.881 39 H 0.068 0.932 40 H 0.061 0.939 41 H 0.106 0.894 42 H 0.146 0.854 43 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -16.201 8.581 10.578 21.166 hybrid contribution 1.442 -0.122 0.678 1.598 sum -14.759 8.459 11.256 20.398 Atomic orbital electron populations 1.21817 0.97968 0.97999 1.01546 1.21871 0.92982 0.99946 1.01205 1.18712 0.93625 0.88446 0.80903 0.92588 1.21176 0.90461 1.43524 1.02345 0.92132 1.24881 0.98561 0.95137 0.94946 1.69977 1.35731 1.43074 1.02868 0.86511 0.84974 0.78613 0.77269 1.20450 1.21161 1.19955 1.45805 1.13787 1.58242 1.19201 1.16115 0.83419 0.78656 0.82502 1.90896 1.53752 1.64885 1.35902 1.42823 1.12368 1.61191 1.18267 1.17469 0.85490 0.97348 0.94446 1.21223 0.94653 0.94752 0.99509 1.21183 0.96144 1.05150 0.96800 1.18838 0.83966 0.97487 0.94363 1.86183 1.27802 1.74229 1.36995 1.24148 0.97206 0.87629 0.81171 1.88094 1.44878 1.50217 1.48025 1.22811 0.85963 0.96592 1.01231 1.20083 0.94919 1.02680 0.97502 1.20657 0.94035 1.02142 0.97272 0.94160 0.92883 0.95961 0.90073 0.94805 0.92537 0.78310 0.76483 0.83690 0.85146 0.88090 0.88091 0.93232 0.93887 0.89419 0.85416 0.85367 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.07 8.48 37.16 0.32 -2.76 16 2 C -0.12 -2.91 5.49 -26.73 -0.15 -3.06 16 3 C 0.29 7.09 2.13 -69.09 -0.15 6.94 16 4 H 0.06 1.63 7.54 -51.93 -0.39 1.24 16 5 C -0.54 -14.00 8.66 -34.44 -0.30 -14.30 16 6 H 0.06 1.51 7.73 -52.48 -0.41 1.10 16 7 C 0.07 1.83 5.21 -17.82 -0.09 1.74 16 8 N -0.88 -24.76 12.06 55.43 0.67 -24.09 16 9 Si 0.90 20.49 29.54 -169.99 -5.02 15.47 16 10 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 11 H -0.29 -6.54 7.11 56.52 0.40 -6.14 16 12 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 13 N -0.72 -14.64 5.01 -59.81 -0.30 -14.94 16 14 C 0.69 13.77 6.89 -86.92 -0.60 13.17 16 15 O -0.58 -13.46 10.99 5.28 0.06 -13.40 16 16 N -0.70 -10.72 5.35 -14.19 -0.08 -10.79 16 17 C 0.15 2.26 6.28 -83.61 -0.52 1.74 16 18 C -0.08 -1.32 8.68 -39.41 -0.34 -1.67 16 19 C -0.17 -2.48 8.78 -39.46 -0.35 -2.83 16 20 C 0.10 1.30 6.63 -39.23 -0.26 1.04 16 21 O -0.34 -3.92 10.20 -43.50 -0.44 -4.37 16 22 C 0.21 1.93 6.39 101.05 0.65 2.57 16 23 O -0.39 -4.38 10.18 -59.04 -0.60 -4.98 16 24 C 0.03 0.25 10.89 101.05 1.10 1.35 16 25 C -0.13 -1.63 9.98 -39.46 -0.39 -2.03 16 26 C -0.12 -1.51 9.96 -39.41 -0.39 -1.90 16 27 H 0.04 0.90 5.69 -51.93 -0.30 0.60 16 28 H 0.05 1.29 7.73 -51.93 -0.40 0.88 16 29 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 30 H 0.08 2.15 6.75 -51.93 -0.35 1.79 16 31 H 0.03 0.77 8.14 -51.93 -0.42 0.35 16 32 H 0.26 7.09 8.31 -40.82 -0.34 6.75 16 33 H 0.38 6.70 8.54 -40.82 -0.35 6.35 16 34 H 0.40 4.73 8.84 -40.82 -0.36 4.37 16 35 H 0.15 2.71 6.32 -52.48 -0.33 2.38 16 36 H 0.13 1.71 5.85 -52.48 -0.31 1.40 16 37 H 0.10 0.61 8.01 -51.93 -0.42 0.19 16 38 H 0.10 0.81 6.70 -51.92 -0.35 0.47 16 39 H 0.05 0.43 8.03 -51.93 -0.42 0.02 16 40 H 0.04 0.26 8.11 -51.93 -0.42 -0.16 16 41 H 0.09 0.67 8.14 -51.93 -0.42 0.25 16 42 H 0.13 1.30 8.06 -52.49 -0.42 0.87 16 43 H 0.13 1.28 8.06 -52.49 -0.42 0.86 16 LS Contribution 353.80 15.07 5.33 5.33 Total: -1.00 -31.87 353.80 -7.91 -39.78 By element: Atomic # 1 Polarization: 18.02 SS G_CDS: -6.04 Total: 11.98 kcal Atomic # 6 Polarization: 1.50 SS G_CDS: -1.48 Total: 0.02 kcal Atomic # 7 Polarization: -50.13 SS G_CDS: 0.29 Total: -49.83 kcal Atomic # 8 Polarization: -21.76 SS G_CDS: -0.99 Total: -22.75 kcal Atomic # 14 Polarization: 20.49 SS G_CDS: -5.02 Total: 15.47 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -31.87 -7.91 -39.78 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001352935276.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.104 kcal (2) G-P(sol) polarization free energy of solvation -31.870 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.974 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.910 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.780 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.884 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds