Wall clock time and date at job start Tue Mar 31 2020 09:26:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52998 * 109.47061 * 2 1 4 4 H 1.09005 * 109.47435 * 303.19276 * 3 2 1 5 5 C 1.50699 * 109.47380 * 183.19389 * 3 2 1 6 6 H 1.08003 * 119.99852 * 245.43296 * 5 3 2 7 7 C 1.37881 * 120.00349 * 65.42830 * 5 3 2 8 8 N 1.31519 * 119.99523 * 7.56281 * 7 5 3 9 9 Si 1.86789 * 120.00310 * 187.56240 * 7 5 3 10 10 H 1.48505 * 109.47341 * 84.99122 * 9 7 5 11 11 H 1.48503 * 109.47486 * 204.99257 * 9 7 5 12 12 H 1.48505 * 109.47199 * 324.99380 * 9 7 5 13 13 N 1.46497 * 109.47439 * 63.19153 * 3 2 1 14 14 C 1.34772 * 120.00320 * 275.00467 * 13 3 2 15 15 O 1.21596 * 119.99779 * 359.97438 * 14 13 3 16 16 N 1.34777 * 120.00677 * 179.97438 * 14 13 3 17 17 C 1.40151 * 120.00491 * 184.42197 * 16 14 13 18 18 C 1.38833 * 120.01097 * 323.60810 * 17 16 14 19 19 C 1.38096 * 119.98704 * 179.79420 * 18 17 16 20 20 C 1.38715 * 120.01165 * 0.48431 * 19 18 17 21 21 O 1.35983 * 119.98647 * 179.72259 * 20 19 18 22 22 C 1.42906 * 116.99829 * 0.02667 * 21 20 19 23 23 O 1.42897 * 109.47100 * 74.99712 * 22 21 20 24 24 C 1.42893 * 114.00108 * 74.99938 * 23 22 21 25 25 C 1.38718 * 120.03039 * 359.74774 * 20 19 18 26 26 C 1.38096 * 120.01047 * 0.02562 * 25 20 19 27 27 H 1.09000 * 109.47010 * 299.99784 * 1 2 3 28 28 H 1.08995 * 109.47415 * 59.99651 * 1 2 3 29 29 H 1.08998 * 109.46906 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.47010 * 240.00216 * 2 1 3 31 31 H 1.08995 * 109.47415 * 120.00349 * 2 1 3 32 32 H 0.97002 * 119.99629 * 179.97438 * 8 7 5 33 33 H 0.97001 * 120.00124 * 94.99719 * 13 3 2 34 34 H 0.96998 * 119.99575 * 4.41301 * 16 14 13 35 35 H 1.08004 * 120.00788 * 0.02740 * 18 17 16 36 36 H 1.08008 * 119.99548 * 180.23212 * 19 18 17 37 37 H 1.08995 * 109.46626 * 195.00274 * 22 21 20 38 38 H 1.09008 * 109.46645 * 314.99459 * 22 21 20 39 39 H 1.08997 * 109.47147 * 300.00098 * 24 23 22 40 40 H 1.09005 * 109.47194 * 59.99548 * 24 23 22 41 41 H 1.08998 * 109.47463 * 179.97438 * 24 23 22 42 42 H 1.07993 * 119.99194 * 179.97438 * 25 20 19 43 43 H 1.07992 * 120.00603 * 179.97438 * 26 25 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6307 1.9726 -0.8600 5 6 3.5449 1.4433 -0.0792 6 1 4.1290 1.8166 0.7491 7 6 4.1762 0.9674 -1.2088 8 7 3.4704 0.6522 -2.2729 9 14 6.0336 0.7704 -1.2279 10 1 6.3979 -0.5451 -0.6431 11 1 6.5247 0.8430 -2.6275 12 1 6.6548 1.8567 -0.4283 13 7 1.6155 2.1106 1.2327 14 6 0.3954 2.6784 1.3057 15 8 -0.3529 2.6366 0.3482 16 7 0.0046 3.2926 2.4399 17 6 -1.2966 3.8017 2.5487 18 6 -1.9135 4.3726 1.4438 19 6 -3.1973 4.8702 1.5504 20 6 -3.8667 4.8088 2.7638 21 8 -5.1287 5.3040 2.8697 22 6 -5.7035 5.8725 1.6913 23 8 -6.0871 4.8267 0.7962 24 6 -7.2714 4.1305 1.1894 25 6 -3.2491 4.2428 3.8695 26 6 -1.9671 3.7406 3.7629 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 0.5139 -0.8899 29 1 -0.3633 -1.0277 0.0005 30 1 1.8933 -0.5138 -0.8900 31 1 1.8934 -0.5139 0.8899 32 1 3.9146 0.3178 -3.0678 33 1 2.2125 2.1442 1.9965 34 1 0.6240 3.3823 3.1810 35 1 -1.3910 4.4242 0.5000 36 1 -3.6788 5.3111 0.6899 37 1 -6.5811 6.4594 1.9620 38 1 -4.9714 6.5170 1.2046 39 1 -7.1177 3.6760 2.1681 40 1 -8.1047 4.8313 1.2412 41 1 -7.4956 3.3534 0.4587 42 1 -3.7706 4.1956 4.8139 43 1 -1.4862 3.3004 4.6238 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001352935276.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:26:38 Heat of formation + Delta-G solvation = -109.871730 kcal Electronic energy + Delta-G solvation = -25309.296339 eV Core-core repulsion = 21547.267880 eV Total energy + Delta-G solvation = -3762.028459 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 308.157 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.68212 -40.87364 -39.12131 -37.66963 -36.81216 -35.23771 -34.23221 -32.71612 -31.98316 -29.91960 -28.79654 -28.34189 -26.15736 -25.06438 -24.07359 -23.08980 -22.03649 -21.33723 -19.78444 -19.37732 -18.71262 -17.88874 -17.77480 -17.52385 -16.88370 -16.61262 -16.28961 -15.96314 -15.58646 -15.16373 -15.02556 -14.87337 -14.57164 -14.35318 -14.26911 -14.12826 -13.53737 -13.44724 -13.27183 -13.10373 -12.88806 -12.66607 -12.60257 -12.22481 -12.17624 -12.07889 -11.82623 -11.63050 -11.15222 -11.08941 -11.04046 -10.72431 -10.53234 -9.92419 -9.66738 -8.63844 -8.17438 -6.31186 0.37989 0.44538 1.45802 1.46842 1.56156 1.85431 2.26010 2.30265 2.44004 2.75949 2.94736 3.14512 3.52572 3.93327 3.94437 4.09662 4.23379 4.37197 4.46269 4.47854 4.48345 4.54378 4.55321 4.60978 4.73576 4.84093 4.93030 5.06584 5.11850 5.22359 5.39710 5.41968 5.44210 5.51672 5.56720 5.63198 5.74731 5.81901 5.90218 6.00176 6.08890 6.33958 6.45181 6.78063 7.31561 7.37059 7.78225 8.91044 Molecular weight = 308.16amu Principal moments of inertia in cm(-1) A = 0.026306 B = 0.002779 C = 0.002666 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1064.147735 B =10072.553400 C =10500.741928 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.112 4.112 3 C 0.295 3.705 4 H 0.002 0.998 5 C -0.547 4.547 6 H 0.073 0.927 7 C 0.016 3.984 8 N -0.917 5.917 9 Si 0.969 3.031 10 H -0.270 1.270 11 H -0.289 1.289 12 H -0.264 1.264 13 N -0.715 5.715 14 C 0.691 3.309 15 O -0.616 6.616 16 N -0.677 5.677 17 C 0.123 3.877 18 C -0.105 4.105 19 C -0.181 4.181 20 C 0.100 3.900 21 O -0.336 6.336 22 C 0.202 3.798 23 O -0.420 6.420 24 C 0.025 3.975 25 C -0.130 4.130 26 C -0.103 4.103 27 H 0.042 0.958 28 H 0.024 0.976 29 H 0.045 0.955 30 H 0.053 0.947 31 H 0.048 0.952 32 H 0.265 0.735 33 H 0.402 0.598 34 H 0.420 0.580 35 H 0.110 0.890 36 H 0.133 0.867 37 H 0.138 0.862 38 H 0.106 0.894 39 H 0.044 0.956 40 H 0.068 0.932 41 H 0.089 0.911 42 H 0.158 0.842 43 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.958 9.066 14.767 23.556 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.152 4.152 3 C 0.191 3.809 4 H 0.020 0.980 5 C -0.586 4.586 6 H 0.092 0.908 7 C -0.184 4.184 8 N -0.555 5.555 9 Si 0.794 3.206 10 H -0.196 1.196 11 H -0.215 1.215 12 H -0.188 1.188 13 N -0.368 5.368 14 C 0.392 3.608 15 O -0.496 6.496 16 N -0.328 5.328 17 C 0.028 3.972 18 C -0.126 4.126 19 C -0.200 4.200 20 C 0.056 3.944 21 O -0.252 6.252 22 C 0.090 3.910 23 O -0.340 6.340 24 C -0.071 4.071 25 C -0.149 4.149 26 C -0.123 4.123 27 H 0.061 0.939 28 H 0.044 0.956 29 H 0.064 0.936 30 H 0.072 0.928 31 H 0.067 0.933 32 H 0.073 0.927 33 H 0.237 0.763 34 H 0.258 0.742 35 H 0.128 0.872 36 H 0.151 0.849 37 H 0.155 0.845 38 H 0.124 0.876 39 H 0.062 0.938 40 H 0.087 0.913 41 H 0.107 0.893 42 H 0.176 0.824 43 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges -16.558 8.868 13.673 23.233 hybrid contribution 1.375 -0.105 -0.242 1.400 sum -15.183 8.763 13.430 22.084 Atomic orbital electron populations 1.21635 0.96885 0.98986 1.00255 1.21716 0.93804 0.99228 1.00426 1.18253 0.93159 0.88504 0.80937 0.97986 1.21538 0.91137 1.43165 1.02730 0.90848 1.25774 1.03311 0.94787 0.94526 1.70133 1.37725 1.44116 1.03543 0.85411 0.79152 0.79010 0.77072 1.19552 1.21506 1.18823 1.45404 1.14514 1.58397 1.18471 1.16213 0.82785 0.78632 0.83182 1.90886 1.54776 1.66161 1.37772 1.42448 1.13046 1.59969 1.17296 1.17666 0.85561 0.98617 0.95372 1.21052 0.95746 0.96936 0.98837 1.21183 0.95536 1.05481 0.97848 1.19018 0.84561 0.96816 0.94054 1.86201 1.26785 1.74029 1.38225 1.24571 0.98600 0.87271 0.80553 1.88066 1.46074 1.50955 1.48919 1.22959 0.85969 0.97240 1.00906 1.20492 0.94773 1.01329 0.98307 1.20959 0.93853 1.00671 0.96856 0.93938 0.95641 0.93648 0.92832 0.93316 0.92650 0.76340 0.74204 0.87197 0.84930 0.84503 0.87623 0.93756 0.91314 0.89273 0.82429 0.81974 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.53 8.48 71.98 0.61 -4.92 16 2 C -0.11 -5.52 5.49 30.59 0.17 -5.35 16 3 C 0.30 15.12 2.13 44.24 0.09 15.22 16 4 H 0.00 0.14 7.54 -2.38 -0.02 0.12 16 5 C -0.55 -28.73 8.66 25.60 0.22 -28.51 16 6 H 0.07 3.58 7.73 -2.91 -0.02 3.55 16 7 C 0.02 0.88 5.21 84.65 0.44 1.32 16 8 N -0.92 -53.24 12.06 21.45 0.26 -52.98 16 9 Si 0.97 41.97 29.54 68.60 2.03 44.00 16 10 H -0.27 -11.28 7.11 99.48 0.71 -10.58 16 11 H -0.29 -12.58 7.11 99.48 0.71 -11.88 16 12 H -0.26 -10.89 7.11 99.48 0.71 -10.18 16 13 N -0.72 -29.29 5.01 -461.41 -2.31 -31.60 16 14 C 0.69 27.97 6.89 179.06 1.23 29.21 16 15 O -0.62 -30.21 10.99 -4.02 -0.04 -30.26 16 16 N -0.68 -20.31 5.35 -317.06 -1.70 -22.01 16 17 C 0.12 3.66 6.28 38.09 0.24 3.90 16 18 C -0.10 -3.57 8.68 22.38 0.19 -3.37 16 19 C -0.18 -5.24 8.78 22.35 0.20 -5.04 16 20 C 0.10 2.50 6.63 22.50 0.15 2.65 16 21 O -0.34 -7.14 10.20 -70.59 -0.72 -7.86 16 22 C 0.20 3.35 6.39 113.37 0.72 4.07 16 23 O -0.42 -9.01 10.18 -126.21 -1.29 -10.29 16 24 C 0.02 0.38 10.89 113.37 1.23 1.62 16 25 C -0.13 -2.81 9.98 22.35 0.22 -2.58 16 26 C -0.10 -2.30 9.96 22.38 0.22 -2.07 16 27 H 0.04 1.91 5.69 -2.39 -0.01 1.89 16 28 H 0.02 1.27 7.73 -2.39 -0.02 1.25 16 29 H 0.04 1.83 8.14 -2.39 -0.02 1.81 16 30 H 0.05 2.92 6.75 -2.39 -0.02 2.90 16 31 H 0.05 2.20 8.14 -2.39 -0.02 2.19 16 32 H 0.26 14.57 8.31 -92.71 -0.77 13.80 16 33 H 0.40 13.55 8.54 -92.71 -0.79 12.76 16 34 H 0.42 9.08 8.84 -92.71 -0.82 8.26 16 35 H 0.11 4.48 6.32 -2.91 -0.02 4.46 16 36 H 0.13 3.62 5.85 -2.91 -0.02 3.60 16 37 H 0.14 1.24 8.01 -2.39 -0.02 1.22 16 38 H 0.11 1.61 6.70 -2.38 -0.02 1.59 16 39 H 0.04 0.71 8.03 -2.39 -0.02 0.70 16 40 H 0.07 0.68 8.11 -2.38 -0.02 0.66 16 41 H 0.09 1.30 8.14 -2.39 -0.02 1.28 16 42 H 0.16 2.49 8.06 -2.91 -0.02 2.46 16 43 H 0.16 2.49 8.06 -2.91 -0.02 2.47 16 Total: -1.00 -72.12 353.80 1.62 -70.50 By element: Atomic # 1 Polarization: 34.91 SS G_CDS: -0.56 Total: 34.35 kcal Atomic # 6 Polarization: 0.19 SS G_CDS: 5.95 Total: 6.14 kcal Atomic # 7 Polarization: -102.84 SS G_CDS: -3.75 Total: -106.59 kcal Atomic # 8 Polarization: -46.36 SS G_CDS: -2.05 Total: -48.41 kcal Atomic # 14 Polarization: 41.97 SS G_CDS: 2.03 Total: 44.00 kcal Total: -72.12 1.62 -70.50 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001352935276.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.367 kcal (2) G-P(sol) polarization free energy of solvation -72.124 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.490 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.619 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.505 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.872 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds