Wall clock time and date at job start Tue Mar 31 2020 09:48:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42906 * 1 3 3 C 1.42906 * 113.99714 * 2 1 4 4 C 1.53002 * 109.46672 * 179.97438 * 3 2 1 5 5 C 1.52996 * 109.47141 * 305.00091 * 4 3 2 6 6 O 1.42904 * 109.47154 * 65.00087 * 4 3 2 7 7 C 1.52997 * 109.47078 * 184.99923 * 4 3 2 8 8 N 1.46500 * 109.47205 * 180.02562 * 7 4 3 9 9 C 1.34777 * 119.99739 * 179.97438 * 8 7 4 10 10 O 1.21588 * 120.00249 * 0.02562 * 9 8 7 11 11 N 1.34782 * 119.99763 * 179.97438 * 9 8 7 12 12 C 1.39951 * 119.99880 * 174.85322 * 11 9 8 13 13 C 1.39280 * 119.94836 * 145.77166 * 12 11 9 14 14 C 1.38491 * 120.43188 * 180.02562 * 13 12 11 15 15 C 1.37675 * 120.32153 * 359.97214 * 14 13 12 16 16 C 1.40745 * 119.88156 * 0.02562 * 15 14 13 17 17 C 1.41413 * 120.20874 * 179.97438 * 16 15 14 18 18 H 1.07995 * 119.99644 * 205.17710 * 17 16 15 19 19 C 1.39933 * 119.99958 * 25.17309 * 17 16 15 20 20 N 1.30824 * 119.99970 * 16.80030 * 19 17 16 21 21 Si 1.86796 * 119.99794 * 196.79332 * 19 17 16 22 22 H 1.48494 * 109.47659 * 0.02562 * 21 19 17 23 23 H 1.48503 * 109.47025 * 120.00534 * 21 19 17 24 24 H 1.48504 * 109.47441 * 239.99913 * 21 19 17 25 25 C 1.38235 * 119.94685 * 325.49194 * 12 11 9 26 26 H 1.08999 * 109.47144 * 59.99792 * 1 2 3 27 27 H 1.08991 * 109.47129 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.46935 * 300.00362 * 1 2 3 29 29 H 1.09001 * 109.47081 * 300.00129 * 3 2 1 30 30 H 1.09001 * 109.47062 * 60.00253 * 3 2 1 31 31 H 1.09002 * 109.47312 * 60.00228 * 5 4 3 32 32 H 1.09001 * 109.46934 * 179.97438 * 5 4 3 33 33 H 1.09004 * 109.47296 * 299.99998 * 5 4 3 34 34 H 0.96699 * 113.99612 * 59.99689 * 6 4 3 35 35 H 1.09005 * 109.47348 * 300.00377 * 7 4 3 36 36 H 1.09001 * 109.47228 * 59.99841 * 7 4 3 37 37 H 0.96991 * 119.99936 * 0.02562 * 8 7 4 38 38 H 0.96998 * 119.99655 * 354.85538 * 11 9 8 39 39 H 1.08007 * 119.78614 * 359.97438 * 13 12 11 40 40 H 1.07998 * 119.83916 * 179.97438 * 14 13 12 41 41 H 1.08003 * 120.06345 * 179.97438 * 15 14 13 42 42 H 0.96999 * 120.00179 * 180.02562 * 20 19 17 43 43 H 1.08001 * 120.16004 * 0.02562 * 25 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5355 1.1847 0.0006 5 6 3.9781 0.3198 1.1826 6 8 3.9659 0.5792 -1.2202 7 6 4.1573 2.5769 0.1263 8 7 5.6178 2.4613 0.1264 9 6 6.3813 3.5673 0.2275 10 8 5.8580 4.6610 0.3193 11 7 7.7249 3.4609 0.2281 12 6 8.5181 4.6139 0.2244 13 6 9.7342 4.6234 0.9034 14 6 10.5268 5.7590 0.9068 15 6 10.1211 6.8918 0.2378 16 6 8.8947 6.8970 -0.4527 17 6 8.4709 8.0570 -1.1416 18 1 7.4189 8.2270 -1.3166 19 6 9.4148 8.9845 -1.5966 20 7 10.6749 8.6447 -1.6871 21 14 8.8754 10.7077 -2.0750 22 1 7.4088 10.8387 -1.8826 23 1 9.5767 11.7006 -1.2221 24 1 9.2120 10.9541 -3.5003 25 6 8.0962 5.7396 -0.4579 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3633 0.5139 0.8900 29 1 1.6886 1.8464 -0.8900 30 1 1.6886 1.8464 0.8900 31 1 3.5351 -0.6721 1.0930 32 1 5.0646 0.2334 1.1827 33 1 3.6498 0.7816 2.1138 34 1 3.7192 1.0746 -2.0131 35 1 3.8420 3.1931 -0.7157 36 1 3.8290 3.0388 1.0575 37 1 6.0351 1.5889 0.0528 38 1 8.1420 2.5852 0.2310 39 1 10.0608 3.7396 1.4314 40 1 11.4679 5.7559 1.4367 41 1 10.7423 7.7753 0.2436 42 1 11.3292 9.2877 -2.0021 43 1 7.1553 5.7319 -0.9881 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001413566247.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:48:28 Heat of formation + Delta-G solvation = -103.069708 kcal Electronic energy + Delta-G solvation = -24899.489306 eV Core-core repulsion = 21137.755805 eV Total energy + Delta-G solvation = -3761.733502 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 308.157 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.14328 -39.14203 -37.47622 -36.92198 -34.48978 -34.12806 -32.98424 -31.80559 -29.76441 -28.25715 -27.79056 -26.78976 -25.30813 -25.04117 -21.68026 -20.84255 -20.77702 -19.99135 -18.11335 -17.85139 -17.24461 -16.57316 -16.38415 -15.65926 -15.48128 -15.14164 -15.08950 -14.61069 -14.44976 -14.25159 -14.02823 -13.49745 -13.20314 -12.89263 -12.79641 -12.61363 -12.36900 -12.10208 -12.02083 -11.91828 -11.60472 -11.15777 -11.08694 -10.96718 -10.87384 -10.41637 -10.35672 -10.16484 -10.07277 -9.66565 -9.46196 -9.08991 -8.97349 -8.89716 -7.39132 -6.83925 -6.65763 -4.28500 2.71489 2.83082 3.00245 3.12423 3.19339 3.24618 3.44550 3.74353 3.96420 4.00246 4.40458 4.47247 4.53613 4.66646 4.70331 4.91162 4.94101 5.05498 5.09442 5.29313 5.43326 5.54350 5.62371 5.67502 5.77497 5.99327 6.28897 6.45219 6.52549 6.72853 6.83286 6.84895 7.09572 7.14156 7.29454 7.35126 7.40721 7.74172 7.88452 8.05126 8.16279 8.30101 8.48531 8.71832 8.95016 9.02647 9.09285 10.26516 Molecular weight = 308.16amu Principal moments of inertia in cm(-1) A = 0.021508 B = 0.002676 C = 0.002444 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1301.534349 B =10460.547656 C =11456.115140 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.378 6.378 3 C 0.038 3.962 4 C 0.125 3.875 5 C -0.135 4.135 6 O -0.547 6.547 7 C 0.118 3.882 8 N -0.743 5.743 9 C 0.699 3.301 10 O -0.568 6.568 11 N -0.680 5.680 12 C 0.169 3.831 13 C -0.263 4.263 14 C -0.092 4.092 15 C -0.173 4.173 16 C 0.119 3.881 17 C -0.458 4.458 18 H 0.078 0.922 19 C 0.075 3.925 20 N -0.796 5.796 21 Si 0.907 3.093 22 H -0.260 1.260 23 H -0.272 1.272 24 H -0.275 1.275 25 C -0.209 4.209 26 H 0.041 0.959 27 H 0.086 0.914 28 H 0.041 0.959 29 H 0.056 0.944 30 H 0.062 0.938 31 H 0.074 0.926 32 H 0.063 0.937 33 H 0.071 0.929 34 H 0.378 0.622 35 H 0.070 0.930 36 H 0.076 0.924 37 H 0.397 0.603 38 H 0.394 0.606 39 H 0.088 0.912 40 H 0.091 0.909 41 H 0.119 0.881 42 H 0.279 0.721 43 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.966 -14.750 2.529 20.470 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.296 6.296 3 C -0.040 4.040 4 C 0.083 3.917 5 C -0.192 4.192 6 O -0.353 6.353 7 C -0.008 4.008 8 N -0.401 5.401 9 C 0.399 3.601 10 O -0.444 6.444 11 N -0.327 5.327 12 C 0.077 3.923 13 C -0.284 4.284 14 C -0.111 4.111 15 C -0.193 4.193 16 C 0.116 3.884 17 C -0.487 4.487 18 H 0.096 0.904 19 C -0.142 4.142 20 N -0.422 5.422 21 Si 0.732 3.268 22 H -0.184 1.184 23 H -0.198 1.198 24 H -0.201 1.201 25 C -0.231 4.231 26 H 0.060 0.940 27 H 0.105 0.895 28 H 0.060 0.940 29 H 0.075 0.925 30 H 0.080 0.920 31 H 0.093 0.907 32 H 0.082 0.918 33 H 0.090 0.910 34 H 0.226 0.774 35 H 0.088 0.912 36 H 0.094 0.906 37 H 0.232 0.768 38 H 0.228 0.772 39 H 0.106 0.894 40 H 0.109 0.891 41 H 0.136 0.864 42 H 0.089 0.911 43 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -13.920 -14.262 2.929 20.144 hybrid contribution -0.243 0.596 -0.688 0.942 sum -14.163 -13.666 2.241 19.809 Atomic orbital electron populations 1.22777 0.81030 1.02863 1.00034 1.87935 1.19488 1.26795 1.95385 1.23132 0.93833 0.85573 1.01434 1.21455 0.90736 0.92272 0.87206 1.21650 1.01966 1.00650 0.94932 1.86587 1.80949 1.52707 1.15025 1.21639 0.80261 0.95610 1.03268 1.44896 1.05654 1.08574 1.81021 1.15943 0.81610 0.84258 0.78291 1.90977 1.72348 1.25192 1.55879 1.42563 1.03971 1.08939 1.77195 1.17222 0.90976 0.85904 0.98176 1.20014 0.98145 0.99450 1.10832 1.20443 0.97551 0.93601 0.99511 1.21334 0.99360 0.97861 1.00771 1.17501 0.90771 0.91117 0.88976 1.19599 0.94512 1.03110 1.31513 0.90399 1.25897 0.94454 1.00272 0.93566 1.69837 1.02622 1.35397 1.34345 0.86280 0.80306 0.81779 0.78457 1.18401 1.19755 1.20082 1.20990 1.02848 0.92940 1.06319 0.94040 0.89507 0.94029 0.92549 0.91950 0.90690 0.91810 0.91045 0.77421 0.91212 0.90611 0.76762 0.77229 0.89360 0.89074 0.86353 0.91066 0.87596 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.18 11.01 101.05 1.11 1.30 16 2 O -0.38 -3.47 9.79 -40.08 -0.39 -3.86 16 3 C 0.04 0.30 5.06 37.16 0.19 0.49 16 4 C 0.12 1.12 0.84 -90.62 -0.08 1.05 16 5 C -0.13 -1.19 8.47 37.16 0.31 -0.88 16 6 O -0.55 -5.30 12.69 -40.08 -0.51 -5.80 16 7 C 0.12 1.31 4.78 -4.04 -0.02 1.29 16 8 N -0.74 -9.67 5.15 -65.22 -0.34 -10.00 16 9 C 0.70 12.87 8.29 -86.91 -0.72 12.15 16 10 O -0.57 -13.12 14.10 5.29 0.07 -13.04 16 11 N -0.68 -12.52 5.34 -14.27 -0.08 -12.60 16 12 C 0.17 3.94 6.25 -83.76 -0.52 3.41 16 13 C -0.26 -5.91 9.97 -39.10 -0.39 -6.30 16 14 C -0.09 -2.19 10.02 -39.69 -0.40 -2.59 16 15 C -0.17 -4.64 8.69 -38.84 -0.34 -4.97 16 16 C 0.12 3.35 5.57 -106.85 -0.59 2.75 16 17 C -0.46 -12.77 9.05 -37.74 -0.34 -13.11 16 18 H 0.08 2.15 7.90 -52.49 -0.41 1.74 16 19 C 0.08 1.95 5.16 -17.35 -0.09 1.86 16 20 N -0.80 -21.02 10.94 55.55 0.61 -20.41 16 21 Si 0.91 19.33 29.59 -169.99 -5.03 14.30 16 22 H -0.26 -5.55 7.11 56.52 0.40 -5.15 16 23 H -0.27 -5.67 7.11 56.52 0.40 -5.27 16 24 H -0.28 -5.73 7.11 56.52 0.40 -5.33 16 25 C -0.21 -5.56 8.39 -38.69 -0.32 -5.88 16 26 H 0.04 0.22 8.14 -51.93 -0.42 -0.20 16 27 H 0.09 0.44 8.14 -51.93 -0.42 0.02 16 28 H 0.04 0.22 8.14 -51.93 -0.42 -0.20 16 29 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 30 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 31 H 0.07 0.71 7.56 -51.93 -0.39 0.32 16 32 H 0.06 0.56 6.86 -51.93 -0.36 0.20 16 33 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 34 H 0.38 2.64 9.04 45.56 0.41 3.06 16 35 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 36 H 0.08 0.87 8.14 -51.93 -0.42 0.45 16 37 H 0.40 4.30 7.21 -40.82 -0.29 4.01 16 38 H 0.39 5.67 8.84 -40.82 -0.36 5.31 16 39 H 0.09 1.71 8.06 -52.48 -0.42 1.29 16 40 H 0.09 1.91 8.06 -52.49 -0.42 1.49 16 41 H 0.12 3.24 6.17 -52.48 -0.32 2.91 16 42 H 0.28 6.65 8.30 -40.82 -0.34 6.31 16 43 H 0.11 2.91 6.48 -52.49 -0.34 2.57 16 LS Contribution 360.09 15.07 5.43 5.43 Total: -1.00 -33.53 360.09 -7.87 -41.39 By element: Atomic # 1 Polarization: 19.48 SS G_CDS: -5.43 Total: 14.05 kcal Atomic # 6 Polarization: -7.24 SS G_CDS: -2.20 Total: -9.44 kcal Atomic # 7 Polarization: -43.21 SS G_CDS: 0.20 Total: -43.02 kcal Atomic # 8 Polarization: -21.89 SS G_CDS: -0.83 Total: -22.71 kcal Atomic # 14 Polarization: 19.33 SS G_CDS: -5.03 Total: 14.30 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -33.53 -7.87 -41.39 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001413566247.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.677 kcal (2) G-P(sol) polarization free energy of solvation -33.526 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.203 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.867 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.393 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.070 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds