Wall clock time and date at job start Tue Mar 31 2020 09:48:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42906 * 1 3 3 C 1.42906 * 113.99714 * 2 1 4 4 C 1.53002 * 109.46672 * 179.97438 * 3 2 1 5 5 C 1.52996 * 109.47141 * 305.00091 * 4 3 2 6 6 O 1.42904 * 109.47154 * 65.00087 * 4 3 2 7 7 C 1.52997 * 109.47078 * 184.99923 * 4 3 2 8 8 N 1.46500 * 109.47205 * 180.02562 * 7 4 3 9 9 C 1.34777 * 119.99739 * 179.97438 * 8 7 4 10 10 O 1.21588 * 120.00249 * 0.02562 * 9 8 7 11 11 N 1.34782 * 119.99763 * 179.97438 * 9 8 7 12 12 C 1.39951 * 119.99880 * 174.85322 * 11 9 8 13 13 C 1.39280 * 119.94836 * 145.77166 * 12 11 9 14 14 C 1.38491 * 120.43188 * 180.02562 * 13 12 11 15 15 C 1.37675 * 120.32153 * 359.97214 * 14 13 12 16 16 C 1.40745 * 119.88156 * 0.02562 * 15 14 13 17 17 C 1.41413 * 120.20874 * 179.97438 * 16 15 14 18 18 H 1.07995 * 119.99644 * 205.17710 * 17 16 15 19 19 C 1.39933 * 119.99958 * 25.17309 * 17 16 15 20 20 N 1.30824 * 119.99970 * 16.80030 * 19 17 16 21 21 Si 1.86796 * 119.99794 * 196.79332 * 19 17 16 22 22 H 1.48494 * 109.47659 * 0.02562 * 21 19 17 23 23 H 1.48503 * 109.47025 * 120.00534 * 21 19 17 24 24 H 1.48504 * 109.47441 * 239.99913 * 21 19 17 25 25 C 1.38235 * 119.94685 * 325.49194 * 12 11 9 26 26 H 1.08999 * 109.47144 * 59.99792 * 1 2 3 27 27 H 1.08991 * 109.47129 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.46935 * 300.00362 * 1 2 3 29 29 H 1.09001 * 109.47081 * 300.00129 * 3 2 1 30 30 H 1.09001 * 109.47062 * 60.00253 * 3 2 1 31 31 H 1.09002 * 109.47312 * 60.00228 * 5 4 3 32 32 H 1.09001 * 109.46934 * 179.97438 * 5 4 3 33 33 H 1.09004 * 109.47296 * 299.99998 * 5 4 3 34 34 H 0.96699 * 113.99612 * 59.99689 * 6 4 3 35 35 H 1.09005 * 109.47348 * 300.00377 * 7 4 3 36 36 H 1.09001 * 109.47228 * 59.99841 * 7 4 3 37 37 H 0.96991 * 119.99936 * 0.02562 * 8 7 4 38 38 H 0.96998 * 119.99655 * 354.85538 * 11 9 8 39 39 H 1.08007 * 119.78614 * 359.97438 * 13 12 11 40 40 H 1.07998 * 119.83916 * 179.97438 * 14 13 12 41 41 H 1.08003 * 120.06345 * 179.97438 * 15 14 13 42 42 H 0.96999 * 120.00179 * 180.02562 * 20 19 17 43 43 H 1.08001 * 120.16004 * 0.02562 * 25 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5355 1.1847 0.0006 5 6 3.9781 0.3198 1.1826 6 8 3.9659 0.5792 -1.2202 7 6 4.1573 2.5769 0.1263 8 7 5.6178 2.4613 0.1264 9 6 6.3813 3.5673 0.2275 10 8 5.8580 4.6610 0.3193 11 7 7.7249 3.4609 0.2281 12 6 8.5181 4.6139 0.2244 13 6 9.7342 4.6234 0.9034 14 6 10.5268 5.7590 0.9068 15 6 10.1211 6.8918 0.2378 16 6 8.8947 6.8970 -0.4527 17 6 8.4709 8.0570 -1.1416 18 1 7.4189 8.2270 -1.3166 19 6 9.4148 8.9845 -1.5966 20 7 10.6749 8.6447 -1.6871 21 14 8.8754 10.7077 -2.0750 22 1 7.4088 10.8387 -1.8826 23 1 9.5767 11.7006 -1.2221 24 1 9.2120 10.9541 -3.5003 25 6 8.0962 5.7396 -0.4579 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3633 0.5139 0.8900 29 1 1.6886 1.8464 -0.8900 30 1 1.6886 1.8464 0.8900 31 1 3.5351 -0.6721 1.0930 32 1 5.0646 0.2334 1.1827 33 1 3.6498 0.7816 2.1138 34 1 3.7192 1.0746 -2.0131 35 1 3.8420 3.1931 -0.7157 36 1 3.8290 3.0388 1.0575 37 1 6.0351 1.5889 0.0528 38 1 8.1420 2.5852 0.2310 39 1 10.0608 3.7396 1.4314 40 1 11.4679 5.7559 1.4367 41 1 10.7423 7.7753 0.2436 42 1 11.3292 9.2877 -2.0021 43 1 7.1553 5.7319 -0.9881 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001413566247.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:48:27 Heat of formation + Delta-G solvation = -128.916103 kcal Electronic energy + Delta-G solvation = -24900.610090 eV Core-core repulsion = 21137.755805 eV Total energy + Delta-G solvation = -3762.854285 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 308.157 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.52501 -40.08459 -39.05075 -37.83208 -36.20095 -35.38487 -34.76768 -32.70439 -31.73002 -29.91357 -28.40071 -27.70716 -27.21120 -25.93071 -23.32152 -22.69585 -21.71363 -21.48624 -19.59702 -19.42018 -18.31905 -17.43297 -17.22741 -17.04493 -16.88562 -16.54698 -16.37112 -16.05037 -15.67606 -15.53992 -15.15820 -14.86813 -14.64707 -14.29423 -14.05298 -13.76724 -13.49495 -13.28942 -13.08693 -12.96048 -12.88497 -12.77710 -12.73548 -12.46132 -12.16593 -11.99487 -11.68437 -11.54796 -11.26414 -11.09572 -10.96907 -10.77953 -10.65391 -10.15056 -9.37349 -8.71178 -8.57010 -6.35116 0.93776 1.04399 1.36927 1.48558 1.52406 1.62214 2.18421 2.22394 2.67908 2.76070 3.25123 3.37157 3.68674 3.76164 3.78431 3.85252 4.31355 4.38873 4.48914 4.54457 4.56156 4.57092 4.66114 4.74441 4.86927 4.89814 4.97144 5.06588 5.11659 5.14313 5.20857 5.28012 5.34157 5.40205 5.73089 5.84632 6.07263 6.13030 6.16560 6.19506 6.38341 6.70699 6.73327 6.96105 7.02759 7.08925 7.59205 8.35020 Molecular weight = 308.16amu Principal moments of inertia in cm(-1) A = 0.021508 B = 0.002676 C = 0.002444 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1301.534349 B =10460.547656 C =11456.115140 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.399 6.399 3 C 0.038 3.962 4 C 0.135 3.865 5 C -0.135 4.135 6 O -0.559 6.559 7 C 0.116 3.884 8 N -0.718 5.718 9 C 0.696 3.304 10 O -0.618 6.618 11 N -0.670 5.670 12 C 0.177 3.823 13 C -0.252 4.252 14 C -0.090 4.090 15 C -0.200 4.200 16 C 0.088 3.912 17 C -0.501 4.501 18 H 0.062 0.938 19 C 0.037 3.963 20 N -0.822 5.822 21 Si 0.982 3.018 22 H -0.266 1.266 23 H -0.259 1.259 24 H -0.262 1.262 25 C -0.236 4.236 26 H 0.048 0.952 27 H 0.096 0.904 28 H 0.050 0.950 29 H 0.066 0.934 30 H 0.072 0.928 31 H 0.069 0.931 32 H 0.064 0.936 33 H 0.079 0.921 34 H 0.389 0.611 35 H 0.065 0.935 36 H 0.074 0.926 37 H 0.412 0.588 38 H 0.417 0.583 39 H 0.132 0.868 40 H 0.124 0.876 41 H 0.104 0.896 42 H 0.289 0.711 43 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.049 -16.083 3.064 21.574 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.318 6.318 3 C -0.040 4.040 4 C 0.094 3.906 5 C -0.192 4.192 6 O -0.367 6.367 7 C -0.009 4.009 8 N -0.376 5.376 9 C 0.396 3.604 10 O -0.497 6.497 11 N -0.319 5.319 12 C 0.083 3.917 13 C -0.273 4.273 14 C -0.109 4.109 15 C -0.220 4.220 16 C 0.086 3.914 17 C -0.531 4.531 18 H 0.080 0.920 19 C -0.178 4.178 20 N -0.448 5.448 21 Si 0.802 3.198 22 H -0.190 1.190 23 H -0.183 1.183 24 H -0.186 1.186 25 C -0.258 4.258 26 H 0.067 0.933 27 H 0.114 0.886 28 H 0.069 0.931 29 H 0.085 0.915 30 H 0.090 0.910 31 H 0.088 0.912 32 H 0.083 0.917 33 H 0.098 0.902 34 H 0.238 0.762 35 H 0.083 0.917 36 H 0.092 0.908 37 H 0.250 0.750 38 H 0.255 0.745 39 H 0.149 0.851 40 H 0.142 0.858 41 H 0.122 0.878 42 H 0.100 0.900 43 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -14.010 -15.695 3.458 21.321 hybrid contribution -0.261 0.822 -0.815 1.187 sum -14.271 -14.873 2.643 20.781 Atomic orbital electron populations 1.22939 0.79629 1.03796 1.00829 1.87892 1.21075 1.27294 1.95572 1.23123 0.92867 0.85547 1.02453 1.21331 0.91463 0.90639 0.87205 1.21670 1.01978 1.00377 0.95217 1.86562 1.81210 1.53195 1.15694 1.21797 0.78817 0.97205 1.03063 1.44689 1.06219 1.07686 1.79017 1.16139 0.81664 0.84660 0.77920 1.90958 1.73194 1.27571 1.58010 1.42327 1.03913 1.08671 1.76941 1.17277 0.91538 0.86309 0.96551 1.20443 0.97049 1.00372 1.09457 1.20824 0.98768 0.92877 0.98413 1.21301 0.99241 0.98853 1.02563 1.17846 0.91927 0.91849 0.89817 1.19738 0.94300 1.05075 1.33964 0.92021 1.26701 0.94252 1.03918 0.92911 1.69863 1.03538 1.36998 1.34449 0.85178 0.79442 0.76324 0.78829 1.18951 1.18331 1.18630 1.20940 1.02330 0.94383 1.08173 0.93331 0.88600 0.93137 0.91548 0.91002 0.91202 0.91728 0.90207 0.76171 0.91663 0.90755 0.75031 0.74546 0.85064 0.85838 0.87769 0.90031 0.89852 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.26 11.01 113.37 1.25 1.51 16 2 O -0.40 -6.69 9.79 -144.34 -1.41 -8.11 16 3 C 0.04 0.54 5.06 71.98 0.36 0.90 16 4 C 0.14 2.22 0.84 -10.80 -0.01 2.21 16 5 C -0.14 -2.15 8.47 71.98 0.61 -1.54 16 6 O -0.56 -9.88 12.69 -144.34 -1.83 -11.71 16 7 C 0.12 2.45 4.78 86.38 0.41 2.86 16 8 N -0.72 -17.67 5.15 -478.53 -2.47 -20.14 16 9 C 0.70 25.24 8.29 179.05 1.48 26.72 16 10 O -0.62 -29.16 14.10 -3.99 -0.06 -29.22 16 11 N -0.67 -23.67 5.34 -317.33 -1.70 -25.37 16 12 C 0.18 8.13 6.25 38.09 0.24 8.37 16 13 C -0.25 -10.72 9.97 22.58 0.23 -10.50 16 14 C -0.09 -4.17 10.02 22.20 0.22 -3.94 16 15 C -0.20 -10.90 8.69 22.75 0.20 -10.70 16 16 C 0.09 5.18 5.57 -21.30 -0.12 5.06 16 17 C -0.50 -29.49 9.05 23.46 0.21 -29.28 16 18 H 0.06 3.66 7.90 -2.91 -0.02 3.64 16 19 C 0.04 1.96 5.16 85.25 0.44 2.40 16 20 N -0.82 -44.35 10.94 21.82 0.24 -44.11 16 21 Si 0.98 40.45 29.59 68.60 2.03 42.48 16 22 H -0.27 -11.03 7.11 99.48 0.71 -10.32 16 23 H -0.26 -10.04 7.11 99.48 0.71 -9.33 16 24 H -0.26 -10.14 7.11 99.48 0.71 -9.43 16 25 C -0.24 -13.02 8.39 22.85 0.19 -12.83 16 26 H 0.05 0.45 8.14 -2.39 -0.02 0.43 16 27 H 0.10 0.83 8.14 -2.39 -0.02 0.81 16 28 H 0.05 0.45 8.14 -2.39 -0.02 0.43 16 29 H 0.07 0.81 8.14 -2.39 -0.02 0.79 16 30 H 0.07 0.88 8.14 -2.39 -0.02 0.86 16 31 H 0.07 1.21 7.56 -2.39 -0.02 1.19 16 32 H 0.06 0.99 6.86 -2.39 -0.02 0.97 16 33 H 0.08 1.12 8.14 -2.39 -0.02 1.10 16 34 H 0.39 4.86 9.04 -74.06 -0.67 4.19 16 35 H 0.07 1.47 8.14 -2.38 -0.02 1.45 16 36 H 0.07 1.64 8.14 -2.39 -0.02 1.62 16 37 H 0.41 7.96 7.21 -92.71 -0.67 7.29 16 38 H 0.42 10.79 8.84 -92.71 -0.82 9.97 16 39 H 0.13 4.47 8.06 -2.91 -0.02 4.44 16 40 H 0.12 4.83 8.06 -2.91 -0.02 4.81 16 41 H 0.10 5.88 6.17 -2.91 -0.02 5.86 16 42 H 0.29 13.90 8.30 -92.71 -0.77 13.14 16 43 H 0.08 4.87 6.48 -2.91 -0.02 4.85 16 Total: -1.00 -75.60 360.09 -0.58 -76.17 By element: Atomic # 1 Polarization: 39.86 SS G_CDS: -1.10 Total: 38.76 kcal Atomic # 6 Polarization: -24.47 SS G_CDS: 5.72 Total: -18.75 kcal Atomic # 7 Polarization: -85.70 SS G_CDS: -3.92 Total: -89.62 kcal Atomic # 8 Polarization: -45.74 SS G_CDS: -3.30 Total: -49.04 kcal Atomic # 14 Polarization: 40.45 SS G_CDS: 2.03 Total: 42.48 kcal Total: -75.60 -0.58 -76.17 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001413566247.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.741 kcal (2) G-P(sol) polarization free energy of solvation -75.597 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -128.338 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.578 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.175 kcal (6) G-S(sol) free energy of system = (1) + (5) -128.916 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds