Wall clock time and date at job start Tue Mar 31 2020 10:39:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09001 * 110.38649 * 2 1 4 4 C 1.54390 * 110.34264 * 237.77498 * 2 1 3 5 5 N 1.48147 * 104.61753 * 264.99430 * 4 2 1 6 6 C 1.34772 * 127.84407 * 140.38799 * 5 4 2 7 7 O 1.21279 * 120.00385 * 179.97438 * 6 5 4 8 8 C 1.50707 * 119.99610 * 359.97438 * 6 5 4 9 9 C 1.52995 * 109.46825 * 179.97438 * 8 6 5 10 10 C 1.53002 * 109.47118 * 179.97438 * 9 8 6 11 11 F 1.39898 * 109.46751 * 60.00000 * 10 9 8 12 12 F 1.39892 * 109.47571 * 180.02562 * 10 9 8 13 13 F 1.39901 * 109.47231 * 300.00470 * 10 9 8 14 14 C 1.48422 * 104.33645 * 320.38761 * 5 4 2 15 15 C 1.54280 * 110.34696 * 122.23336 * 2 1 3 16 16 H 1.08995 * 110.34162 * 237.85035 * 15 2 1 17 17 C 1.53004 * 110.34297 * 0.02562 * 15 2 1 18 18 N 1.46499 * 109.47198 * 183.52522 * 17 15 2 19 19 C 1.36939 * 119.99933 * 180.27608 * 18 17 15 20 20 H 1.08001 * 119.99700 * 359.72658 * 19 18 17 21 21 C 1.38810 * 120.00095 * 179.71972 * 19 18 17 22 22 N 1.31624 * 119.99740 * 0.02562 * 21 19 18 23 23 Si 1.86796 * 120.00044 * 179.97438 * 21 19 18 24 24 H 1.48501 * 109.47173 * 60.00435 * 23 21 19 25 25 H 1.48497 * 109.47172 * 180.02562 * 23 21 19 26 26 H 1.48506 * 109.47132 * 300.00314 * 23 21 19 27 27 H 1.09002 * 109.47556 * 297.76108 * 1 2 3 28 28 H 1.08999 * 109.47838 * 57.76754 * 1 2 3 29 29 H 1.09007 * 109.46748 * 177.76945 * 1 2 3 30 30 H 1.09002 * 110.40833 * 23.77509 * 4 2 1 31 31 H 1.08998 * 110.40810 * 146.20453 * 4 2 1 32 32 H 1.09001 * 109.47016 * 299.99791 * 8 6 5 33 33 H 1.08992 * 109.47279 * 59.99852 * 8 6 5 34 34 H 1.08992 * 109.47510 * 299.99762 * 9 8 6 35 35 H 1.09006 * 109.47128 * 60.00170 * 9 8 6 36 36 H 1.08998 * 110.45062 * 280.87774 * 14 5 4 37 37 H 1.09004 * 110.49836 * 158.35821 * 14 5 4 38 38 H 1.09009 * 109.46730 * 63.52309 * 17 15 2 39 39 H 1.08998 * 109.46846 * 303.52853 * 17 15 2 40 40 H 0.97001 * 119.99790 * 359.97438 * 18 17 15 41 41 H 0.96998 * 119.99409 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9097 1.0217 0.0000 4 6 2.0667 -0.7719 -1.2246 5 7 2.3139 -2.1437 -0.7229 6 6 2.0770 -3.3104 -1.3546 7 8 2.3362 -4.3606 -0.8062 8 6 1.4898 -3.3100 -2.7426 9 6 1.3233 -4.7519 -3.2263 10 6 0.7267 -4.7516 -4.6351 11 9 1.5816 -4.0642 -5.5034 12 9 0.5739 -6.0700 -5.0772 13 9 -0.5215 -4.1201 -4.6128 14 6 2.8819 -1.9422 0.6335 15 6 2.0664 -0.7715 1.2236 16 1 2.7080 -0.1282 1.8257 17 6 0.9063 -1.3041 2.0671 18 7 1.4347 -1.9596 3.2659 19 6 0.5769 -2.5212 4.1737 20 1 -0.4894 -2.4770 4.0080 21 6 1.0778 -3.1474 5.3067 22 7 2.3774 -3.2010 5.5087 23 14 -0.0923 -3.9128 6.5453 24 1 -0.8978 -4.9676 5.8790 25 1 0.6873 -4.5132 7.6574 26 1 -0.9968 -2.8656 7.0844 27 1 -0.3634 0.4787 0.9094 28 1 -0.3635 0.5481 -0.8692 29 1 -0.3633 -1.0270 -0.0400 30 1 1.3222 -0.7869 -2.0207 31 1 2.9948 -0.3239 -1.5794 32 1 0.5176 -2.8175 -2.7257 33 1 2.1564 -2.7750 -3.4189 34 1 2.2957 -5.2440 -3.2433 35 1 0.6569 -5.2874 -2.5500 36 1 3.9368 -1.6759 0.5689 37 1 2.7519 -2.8393 1.2389 38 1 0.3324 -2.0234 1.4826 39 1 0.2604 -0.4765 2.3602 40 1 2.3924 -1.9997 3.4144 41 1 2.7274 -3.6383 6.3007 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001754813898.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:39:56 Heat of formation + Delta-G solvation = -185.047239 kcal Electronic energy + Delta-G solvation = -26173.509069 eV Core-core repulsion = 21866.364015 eV Total energy + Delta-G solvation = -4307.145054 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 308.145 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -50.35983 -47.85270 -47.83658 -40.20842 -38.17437 -34.59343 -33.94971 -32.79169 -31.17325 -29.35858 -27.57930 -26.45951 -25.02909 -23.39925 -22.54407 -21.83879 -19.44442 -18.99678 -18.82531 -18.51658 -17.88141 -17.04919 -16.62490 -16.34123 -15.49738 -15.30394 -14.78665 -14.67939 -14.54737 -14.26491 -13.99133 -13.98599 -13.82963 -13.65878 -13.53304 -13.39539 -12.86414 -12.78815 -12.61452 -12.21666 -12.09310 -11.94581 -11.72991 -11.68088 -11.51515 -10.98078 -10.83123 -10.64204 -10.42355 -10.23440 -9.93684 -9.84403 -9.64890 -8.83179 -8.64136 -6.89066 -5.73777 -3.02268 2.43420 2.62341 2.93580 3.46470 3.50770 3.51770 3.56983 3.74572 3.80985 4.36809 4.52250 4.55398 4.63362 4.64422 4.88440 4.90549 5.05395 5.32267 5.34761 5.36665 5.44595 5.49717 5.54494 5.60683 5.73686 5.81270 5.99044 6.03589 6.08108 6.18812 6.30596 6.42466 6.51154 6.75910 6.89060 7.59874 7.71780 8.15825 8.45160 9.56143 10.13418 10.47598 11.49122 Molecular weight = 308.15amu Principal moments of inertia in cm(-1) A = 0.015836 B = 0.003349 C = 0.003036 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1767.688736 B = 8358.077623 C = 9221.537296 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.099 4.099 3 H 0.084 0.916 4 C 0.102 3.898 5 N -0.617 5.617 6 C 0.536 3.464 7 O -0.533 6.533 8 C -0.141 4.141 9 C -0.152 4.152 10 C 0.453 3.547 11 F -0.185 7.185 12 F -0.183 7.183 13 F -0.184 7.184 14 C 0.109 3.891 15 C -0.107 4.107 16 H 0.087 0.913 17 C 0.162 3.838 18 N -0.733 5.733 19 C -0.240 4.240 20 H 0.068 0.932 21 C -0.012 4.012 22 N -0.933 5.933 23 Si 0.906 3.094 24 H -0.286 1.286 25 H -0.291 1.291 26 H -0.286 1.286 27 H 0.066 0.934 28 H 0.049 0.951 29 H 0.060 0.940 30 H 0.078 0.922 31 H 0.072 0.928 32 H 0.105 0.895 33 H 0.104 0.896 34 H 0.118 0.882 35 H 0.120 0.880 36 H 0.067 0.933 37 H 0.100 0.900 38 H 0.020 0.980 39 H 0.024 0.976 40 H 0.383 0.617 41 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.848 5.048 -22.324 22.904 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.119 4.119 3 H 0.103 0.897 4 C -0.021 4.021 5 N -0.351 5.351 6 C 0.324 3.676 7 O -0.410 6.410 8 C -0.181 4.181 9 C -0.190 4.190 10 C 0.399 3.601 11 F -0.167 7.167 12 F -0.164 7.164 13 F -0.165 7.165 14 C -0.013 4.013 15 C -0.126 4.126 16 H 0.105 0.895 17 C 0.035 3.965 18 N -0.377 5.377 19 C -0.371 4.371 20 H 0.086 0.914 21 C -0.208 4.208 22 N -0.582 5.582 23 Si 0.738 3.262 24 H -0.213 1.213 25 H -0.217 1.217 26 H -0.213 1.213 27 H 0.085 0.915 28 H 0.068 0.932 29 H 0.079 0.921 30 H 0.096 0.904 31 H 0.090 0.910 32 H 0.124 0.876 33 H 0.122 0.878 34 H 0.136 0.864 35 H 0.138 0.862 36 H 0.085 0.915 37 H 0.118 0.882 38 H 0.038 0.962 39 H 0.041 0.959 40 H 0.216 0.784 41 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -0.888 4.312 -22.026 22.462 hybrid contribution -0.395 -0.349 0.528 0.746 sum -1.282 3.962 -21.498 21.898 Atomic orbital electron populations 1.21920 0.94307 1.02425 1.01769 1.22084 0.96773 0.99013 0.93994 0.89734 1.22542 1.00463 0.82030 0.97088 1.48978 1.62910 1.05135 1.18121 1.19755 0.78488 0.82513 0.86856 1.90782 1.52467 1.30219 1.67483 1.21578 1.04219 0.96639 0.95655 1.22629 1.05978 1.00014 0.90405 1.20606 0.76362 0.73414 0.89703 1.93179 1.70417 1.79958 1.73127 1.93196 1.95684 1.36349 1.91201 1.93191 1.43926 1.82456 1.96954 1.22555 0.96047 1.00546 0.82127 1.22363 0.98506 0.96037 0.95716 0.89492 1.20796 0.93090 0.94741 0.87865 1.42394 1.06536 1.67425 1.21359 1.19147 0.89746 1.28470 0.99711 0.91381 1.24721 0.95826 1.01539 0.98749 1.69645 1.10456 1.49073 1.29007 0.86277 0.79827 0.79124 0.81020 1.21281 1.21670 1.21309 0.91489 0.93187 0.92088 0.90399 0.90951 0.87637 0.87800 0.86358 0.86198 0.91500 0.88203 0.96219 0.95857 0.78372 0.93480 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.61 7.92 37.16 0.29 -1.31 16 2 C -0.10 -1.06 3.66 -89.22 -0.33 -1.39 16 3 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 4 C 0.10 0.96 6.46 -2.41 -0.02 0.94 16 5 N -0.62 -8.15 3.32 -169.07 -0.56 -8.71 16 6 C 0.54 7.47 7.92 -10.98 -0.09 7.38 16 7 O -0.53 -9.85 16.26 5.56 0.09 -9.76 16 8 C -0.14 -1.30 4.44 -27.88 -0.12 -1.42 16 9 C -0.15 -1.39 4.55 -26.73 -0.12 -1.51 16 10 C 0.45 4.10 3.16 37.16 0.12 4.22 16 11 F -0.19 -1.70 16.80 2.25 0.04 -1.66 16 12 F -0.18 -1.84 17.32 2.25 0.04 -1.81 16 13 F -0.18 -1.78 16.80 2.25 0.04 -1.74 16 14 C 0.11 1.70 6.45 -2.25 -0.01 1.69 16 15 C -0.11 -1.58 3.11 -89.22 -0.28 -1.86 16 16 H 0.09 1.29 8.14 -51.93 -0.42 0.86 16 17 C 0.16 3.17 4.41 -4.04 -0.02 3.15 16 18 N -0.73 -18.49 5.16 -59.90 -0.31 -18.80 16 19 C -0.24 -6.79 9.99 -15.06 -0.15 -6.94 16 20 H 0.07 1.88 7.83 -52.49 -0.41 1.47 16 21 C -0.01 -0.36 5.50 -17.43 -0.10 -0.46 16 22 N -0.93 -28.50 13.06 55.49 0.72 -27.77 16 23 Si 0.91 22.78 29.55 -169.99 -5.02 17.76 16 24 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 25 H -0.29 -7.34 7.11 56.52 0.40 -6.94 16 26 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 27 H 0.07 0.80 6.71 -51.93 -0.35 0.45 16 28 H 0.05 0.43 8.14 -51.93 -0.42 0.00 16 29 H 0.06 0.77 6.90 -51.93 -0.36 0.41 16 30 H 0.08 0.58 7.02 -51.93 -0.36 0.21 16 31 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 32 H 0.11 0.84 7.61 -51.93 -0.40 0.44 16 33 H 0.10 0.74 7.80 -51.93 -0.41 0.34 16 34 H 0.12 1.06 8.10 -51.93 -0.42 0.64 16 35 H 0.12 1.17 8.10 -51.93 -0.42 0.75 16 36 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 37 H 0.10 2.02 7.19 -51.93 -0.37 1.64 16 38 H 0.02 0.42 7.01 -51.92 -0.36 0.05 16 39 H 0.02 0.46 6.58 -51.93 -0.34 0.12 16 40 H 0.38 10.10 7.49 -40.82 -0.31 9.79 16 41 H 0.26 7.57 8.31 -40.82 -0.34 7.23 16 LS Contribution 344.49 15.07 5.19 5.19 Total: -1.00 -33.38 344.49 -6.35 -39.73 By element: Atomic # 1 Polarization: 10.84 SS G_CDS: -5.76 Total: 5.08 kcal Atomic # 6 Polarization: 3.31 SS G_CDS: -0.82 Total: 2.49 kcal Atomic # 7 Polarization: -55.15 SS G_CDS: -0.15 Total: -55.29 kcal Atomic # 8 Polarization: -9.85 SS G_CDS: 0.09 Total: -9.76 kcal Atomic # 9 Polarization: -5.32 SS G_CDS: 0.11 Total: -5.21 kcal Atomic # 14 Polarization: 22.78 SS G_CDS: -5.02 Total: 17.76 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -33.38 -6.35 -39.73 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754813898.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -145.317 kcal (2) G-P(sol) polarization free energy of solvation -33.382 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -178.698 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.349 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.731 kcal (6) G-S(sol) free energy of system = (1) + (5) -185.047 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds