Wall clock time and date at job start Tue Mar 31 2020 10:39:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09001 * 110.38649 * 2 1 4 4 C 1.54390 * 110.34264 * 237.77498 * 2 1 3 5 5 N 1.48147 * 104.61753 * 264.99430 * 4 2 1 6 6 C 1.34772 * 127.84407 * 140.38799 * 5 4 2 7 7 O 1.21279 * 120.00385 * 179.97438 * 6 5 4 8 8 C 1.50707 * 119.99610 * 359.97438 * 6 5 4 9 9 C 1.52995 * 109.46825 * 179.97438 * 8 6 5 10 10 C 1.53002 * 109.47118 * 179.97438 * 9 8 6 11 11 F 1.39898 * 109.46751 * 60.00000 * 10 9 8 12 12 F 1.39892 * 109.47571 * 180.02562 * 10 9 8 13 13 F 1.39901 * 109.47231 * 300.00470 * 10 9 8 14 14 C 1.48422 * 104.33645 * 320.38761 * 5 4 2 15 15 C 1.54280 * 110.34696 * 122.23336 * 2 1 3 16 16 H 1.08995 * 110.34162 * 237.85035 * 15 2 1 17 17 C 1.53004 * 110.34297 * 0.02562 * 15 2 1 18 18 N 1.46499 * 109.47198 * 183.52522 * 17 15 2 19 19 C 1.36939 * 119.99933 * 180.27608 * 18 17 15 20 20 H 1.08001 * 119.99700 * 359.72658 * 19 18 17 21 21 C 1.38810 * 120.00095 * 179.71972 * 19 18 17 22 22 N 1.31624 * 119.99740 * 0.02562 * 21 19 18 23 23 Si 1.86796 * 120.00044 * 179.97438 * 21 19 18 24 24 H 1.48501 * 109.47173 * 60.00435 * 23 21 19 25 25 H 1.48497 * 109.47172 * 180.02562 * 23 21 19 26 26 H 1.48506 * 109.47132 * 300.00314 * 23 21 19 27 27 H 1.09002 * 109.47556 * 297.76108 * 1 2 3 28 28 H 1.08999 * 109.47838 * 57.76754 * 1 2 3 29 29 H 1.09007 * 109.46748 * 177.76945 * 1 2 3 30 30 H 1.09002 * 110.40833 * 23.77509 * 4 2 1 31 31 H 1.08998 * 110.40810 * 146.20453 * 4 2 1 32 32 H 1.09001 * 109.47016 * 299.99791 * 8 6 5 33 33 H 1.08992 * 109.47279 * 59.99852 * 8 6 5 34 34 H 1.08992 * 109.47510 * 299.99762 * 9 8 6 35 35 H 1.09006 * 109.47128 * 60.00170 * 9 8 6 36 36 H 1.08998 * 110.45062 * 280.87774 * 14 5 4 37 37 H 1.09004 * 110.49836 * 158.35821 * 14 5 4 38 38 H 1.09009 * 109.46730 * 63.52309 * 17 15 2 39 39 H 1.08998 * 109.46846 * 303.52853 * 17 15 2 40 40 H 0.97001 * 119.99790 * 359.97438 * 18 17 15 41 41 H 0.96998 * 119.99409 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9097 1.0217 0.0000 4 6 2.0667 -0.7719 -1.2246 5 7 2.3139 -2.1437 -0.7229 6 6 2.0770 -3.3104 -1.3546 7 8 2.3362 -4.3606 -0.8062 8 6 1.4898 -3.3100 -2.7426 9 6 1.3233 -4.7519 -3.2263 10 6 0.7267 -4.7516 -4.6351 11 9 1.5816 -4.0642 -5.5034 12 9 0.5739 -6.0700 -5.0772 13 9 -0.5215 -4.1201 -4.6128 14 6 2.8819 -1.9422 0.6335 15 6 2.0664 -0.7715 1.2236 16 1 2.7080 -0.1282 1.8257 17 6 0.9063 -1.3041 2.0671 18 7 1.4347 -1.9596 3.2659 19 6 0.5769 -2.5212 4.1737 20 1 -0.4894 -2.4770 4.0080 21 6 1.0778 -3.1474 5.3067 22 7 2.3774 -3.2010 5.5087 23 14 -0.0923 -3.9128 6.5453 24 1 -0.8978 -4.9676 5.8790 25 1 0.6873 -4.5132 7.6574 26 1 -0.9968 -2.8656 7.0844 27 1 -0.3634 0.4787 0.9094 28 1 -0.3635 0.5481 -0.8692 29 1 -0.3633 -1.0270 -0.0400 30 1 1.3222 -0.7869 -2.0207 31 1 2.9948 -0.3239 -1.5794 32 1 0.5176 -2.8175 -2.7257 33 1 2.1564 -2.7750 -3.4189 34 1 2.2957 -5.2440 -3.2433 35 1 0.6569 -5.2874 -2.5500 36 1 3.9368 -1.6759 0.5689 37 1 2.7519 -2.8393 1.2389 38 1 0.3324 -2.0234 1.4826 39 1 0.2604 -0.4765 2.3602 40 1 2.3924 -1.9997 3.4144 41 1 2.7274 -3.6383 6.3007 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001754813898.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:39:55 Heat of formation + Delta-G solvation = -207.013332 kcal Electronic energy + Delta-G solvation = -26174.461590 eV Core-core repulsion = 21866.364015 eV Total energy + Delta-G solvation = -4308.097576 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 308.145 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -51.10157 -48.60787 -48.56712 -41.28495 -39.32498 -36.38398 -34.81997 -34.13108 -32.83325 -30.73366 -28.69504 -27.32631 -26.59438 -24.83879 -23.72826 -22.95770 -20.39651 -20.26314 -19.55664 -19.43693 -18.94744 -18.67040 -17.63050 -17.38055 -16.75788 -16.34171 -16.30101 -15.49744 -15.45232 -15.40548 -15.32080 -15.01339 -14.74519 -14.73496 -14.62062 -14.45868 -14.17609 -13.96602 -13.64989 -13.36696 -13.25618 -13.00894 -12.84101 -12.75921 -12.71743 -12.60809 -12.41422 -12.21942 -11.87462 -11.64558 -11.55421 -11.24769 -10.96996 -10.88956 -9.71865 -8.99534 -7.97081 -5.25297 1.43690 1.47416 1.53326 1.56943 1.63907 2.02067 2.54088 2.81620 2.99663 3.08556 3.35932 3.46318 3.60900 3.70252 3.84938 3.95573 3.96843 4.20380 4.34128 4.36478 4.39750 4.60211 4.62011 4.65145 4.72739 4.79093 4.84733 4.93125 4.95511 4.98397 5.14915 5.18651 5.30645 5.42715 5.47113 5.61475 6.25836 6.59004 7.10492 7.31603 8.09034 8.30980 9.26362 Molecular weight = 308.15amu Principal moments of inertia in cm(-1) A = 0.015836 B = 0.003349 C = 0.003036 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1767.688736 B = 8358.077623 C = 9221.537296 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.090 4.090 3 H 0.117 0.883 4 C 0.102 3.898 5 N -0.618 5.618 6 C 0.526 3.474 7 O -0.593 6.593 8 C -0.128 4.128 9 C -0.150 4.150 10 C 0.463 3.537 11 F -0.182 7.182 12 F -0.190 7.190 13 F -0.185 7.185 14 C 0.110 3.890 15 C -0.101 4.101 16 H 0.089 0.911 17 C 0.166 3.834 18 N -0.746 5.746 19 C -0.248 4.248 20 H 0.071 0.929 21 C -0.074 4.074 22 N -0.968 5.968 23 Si 0.972 3.028 24 H -0.282 1.282 25 H -0.293 1.293 26 H -0.274 1.274 27 H 0.052 0.948 28 H 0.084 0.916 29 H 0.037 0.963 30 H 0.109 0.891 31 H 0.102 0.898 32 H 0.125 0.875 33 H 0.135 0.865 34 H 0.117 0.883 35 H 0.109 0.891 36 H 0.084 0.916 37 H 0.043 0.957 38 H 0.004 0.996 39 H 0.029 0.971 40 H 0.373 0.627 41 H 0.251 0.749 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.615 7.064 -24.545 25.592 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.109 4.109 3 H 0.135 0.865 4 C -0.019 4.019 5 N -0.351 5.351 6 C 0.316 3.684 7 O -0.474 6.474 8 C -0.168 4.168 9 C -0.189 4.189 10 C 0.409 3.591 11 F -0.164 7.164 12 F -0.171 7.171 13 F -0.166 7.166 14 C -0.013 4.013 15 C -0.121 4.121 16 H 0.107 0.893 17 C 0.040 3.960 18 N -0.389 5.389 19 C -0.380 4.380 20 H 0.089 0.911 21 C -0.266 4.266 22 N -0.619 5.619 23 Si 0.801 3.199 24 H -0.209 1.209 25 H -0.219 1.219 26 H -0.199 1.199 27 H 0.071 0.929 28 H 0.103 0.897 29 H 0.056 0.944 30 H 0.127 0.873 31 H 0.120 0.880 32 H 0.143 0.857 33 H 0.153 0.847 34 H 0.136 0.864 35 H 0.127 0.873 36 H 0.102 0.898 37 H 0.061 0.939 38 H 0.022 0.978 39 H 0.047 0.953 40 H 0.205 0.795 41 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -1.693 6.388 -24.296 25.179 hybrid contribution -0.176 -0.946 1.180 1.522 sum -1.869 5.443 -23.116 23.822 Atomic orbital electron populations 1.21906 0.94436 1.01313 1.02686 1.22136 0.96575 1.00168 0.92053 0.86494 1.22867 1.02864 0.79224 0.96983 1.49115 1.62097 1.06844 1.17070 1.20647 0.77643 0.81765 0.88296 1.90755 1.54988 1.32393 1.69223 1.21587 1.05429 0.97038 0.92727 1.22569 1.05758 1.00230 0.90311 1.20427 0.76203 0.73087 0.89377 1.93186 1.70306 1.79825 1.73036 1.93185 1.95715 1.36974 1.91244 1.93190 1.44080 1.82425 1.96950 1.22349 0.97454 0.98312 0.83216 1.22276 0.96719 0.96127 0.96929 0.89284 1.20914 0.94881 0.93875 0.86370 1.42633 1.05851 1.67715 1.22678 1.19560 0.90353 1.27862 1.00225 0.91119 1.25553 0.97417 1.02747 1.00918 1.69805 1.12206 1.50386 1.29488 0.85239 0.77889 0.78384 0.78435 1.20876 1.21903 1.19950 0.92934 0.89735 0.94389 0.87289 0.87962 0.85660 0.84697 0.86442 0.87299 0.89816 0.93866 0.97788 0.95309 0.79533 0.93986 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.78 7.92 71.98 0.57 -2.21 16 2 C -0.09 -1.62 3.66 -9.89 -0.04 -1.65 16 3 H 0.12 1.48 8.14 -2.39 -0.02 1.46 16 4 C 0.10 1.48 6.46 86.53 0.56 2.04 16 5 N -0.62 -15.48 3.32 -807.22 -2.68 -18.16 16 6 C 0.53 14.37 7.92 87.66 0.69 15.06 16 7 O -0.59 -22.89 16.26 -3.03 -0.05 -22.94 16 8 C -0.13 -2.04 4.44 29.85 0.13 -1.91 16 9 C -0.15 -2.58 4.55 30.59 0.14 -2.44 16 10 C 0.46 7.54 3.16 71.98 0.23 7.77 16 11 F -0.18 -2.86 16.80 44.97 0.76 -2.11 16 12 F -0.19 -3.62 17.32 44.97 0.78 -2.84 16 13 F -0.18 -3.16 16.80 44.97 0.76 -2.40 16 14 C 0.11 3.46 6.45 86.48 0.56 4.02 16 15 C -0.10 -2.92 3.11 -9.89 -0.03 -2.96 16 16 H 0.09 2.55 8.14 -2.39 -0.02 2.53 16 17 C 0.17 6.58 4.41 86.38 0.38 6.96 16 18 N -0.75 -39.02 5.16 -343.44 -1.77 -40.79 16 19 C -0.25 -14.41 9.99 84.03 0.84 -13.58 16 20 H 0.07 3.97 7.83 -2.91 -0.02 3.94 16 21 C -0.07 -4.40 5.50 84.86 0.47 -3.93 16 22 N -0.97 -60.94 13.06 21.65 0.28 -60.66 16 23 Si 0.97 47.62 29.55 68.60 2.03 49.65 16 24 H -0.28 -13.53 7.11 99.48 0.71 -12.83 16 25 H -0.29 -14.35 7.11 99.48 0.71 -13.64 16 26 H -0.27 -12.73 7.11 99.48 0.71 -12.02 16 27 H 0.05 1.15 6.71 -2.39 -0.02 1.13 16 28 H 0.08 1.05 8.14 -2.39 -0.02 1.03 16 29 H 0.04 0.89 6.90 -2.38 -0.02 0.87 16 30 H 0.11 0.98 7.02 -2.39 -0.02 0.96 16 31 H 0.10 0.99 8.14 -2.39 -0.02 0.97 16 32 H 0.13 1.54 7.61 -2.39 -0.02 1.52 16 33 H 0.14 1.35 7.80 -2.39 -0.02 1.33 16 34 H 0.12 2.05 8.10 -2.39 -0.02 2.03 16 35 H 0.11 2.13 8.10 -2.38 -0.02 2.11 16 36 H 0.08 2.31 8.14 -2.39 -0.02 2.30 16 37 H 0.04 1.86 7.19 -2.39 -0.02 1.85 16 38 H 0.00 0.18 7.01 -2.38 -0.02 0.17 16 39 H 0.03 1.13 6.58 -2.39 -0.02 1.11 16 40 H 0.37 20.63 7.49 -92.71 -0.69 19.93 16 41 H 0.25 15.34 8.31 -92.71 -0.77 14.57 16 Total: -1.00 -76.70 344.49 4.96 -71.74 By element: Atomic # 1 Polarization: 20.98 SS G_CDS: 0.36 Total: 21.34 kcal Atomic # 6 Polarization: 2.67 SS G_CDS: 4.50 Total: 7.17 kcal Atomic # 7 Polarization: -115.44 SS G_CDS: -4.17 Total: -119.61 kcal Atomic # 8 Polarization: -22.89 SS G_CDS: -0.05 Total: -22.94 kcal Atomic # 9 Polarization: -9.64 SS G_CDS: 2.29 Total: -7.35 kcal Atomic # 14 Polarization: 47.62 SS G_CDS: 2.03 Total: 49.65 kcal Total: -76.70 4.96 -71.74 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754813898.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -135.271 kcal (2) G-P(sol) polarization free energy of solvation -76.703 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -211.974 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.961 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.742 kcal (6) G-S(sol) free energy of system = (1) + (5) -207.013 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds