Wall clock time and date at job start Tue Mar 31 2020 10:37:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09003 * 109.58533 * 2 1 4 4 C 1.53192 * 109.58336 * 239.57879 * 2 1 3 5 5 H 1.09005 * 109.50202 * 65.59016 * 4 2 1 6 6 N 1.46496 * 109.49945 * 305.52841 * 4 2 1 7 7 C 1.34780 * 120.00523 * 155.00048 * 6 4 2 8 8 O 1.21281 * 119.99652 * 359.97438 * 7 6 4 9 9 C 1.50697 * 120.00216 * 180.02562 * 7 6 4 10 10 C 1.53005 * 109.46848 * 179.97438 * 9 7 6 11 11 C 1.52997 * 109.46948 * 179.97438 * 10 9 7 12 12 F 1.39901 * 109.47460 * 60.00034 * 11 10 9 13 13 F 1.39898 * 109.47379 * 179.97438 * 11 10 9 14 14 F 1.39901 * 109.47046 * 299.99869 * 11 10 9 15 15 C 1.53039 * 109.31389 * 185.57409 * 4 2 1 16 16 C 1.53047 * 109.53603 * 61.36708 * 15 4 2 17 17 C 1.53621 * 109.23718 * 298.51277 * 16 15 4 18 18 N 1.46917 * 108.54954 * 54.85791 * 17 16 15 19 19 C 1.36934 * 120.63785 * 126.36677 * 18 17 16 20 20 H 1.08001 * 120.00467 * 209.46644 * 19 18 17 21 21 C 1.38811 * 119.99680 * 29.18144 * 19 18 17 22 22 N 1.31615 * 119.99984 * 16.09560 * 21 19 18 23 23 Si 1.86801 * 120.00150 * 196.10072 * 21 19 18 24 24 H 1.48505 * 109.46984 * 0.02562 * 23 21 19 25 25 H 1.48498 * 109.47264 * 119.99952 * 23 21 19 26 26 H 1.48498 * 109.47080 * 239.99980 * 23 21 19 27 27 H 1.09001 * 109.46820 * 299.71089 * 1 2 3 28 28 H 1.09003 * 109.47653 * 59.70910 * 1 2 3 29 29 H 1.09003 * 109.47404 * 179.71145 * 1 2 3 30 30 H 0.96999 * 120.00390 * 335.00293 * 6 4 2 31 31 H 1.09003 * 109.46920 * 299.99653 * 9 7 6 32 32 H 1.08996 * 109.47451 * 60.00228 * 9 7 6 33 33 H 1.09003 * 109.47098 * 299.99570 * 10 9 7 34 34 H 1.09001 * 109.47218 * 60.00257 * 10 9 7 35 35 H 1.09001 * 109.46394 * 181.38327 * 15 4 2 36 36 H 1.08996 * 109.46128 * 301.35940 * 15 4 2 37 37 H 1.09004 * 109.49467 * 58.58488 * 16 15 4 38 38 H 1.09003 * 109.49708 * 178.68239 * 16 15 4 39 39 H 1.09001 * 109.74256 * 295.11479 * 17 16 15 40 40 H 1.09010 * 109.66427 * 174.55112 * 17 16 15 41 41 H 0.97003 * 119.99967 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8954 1.0270 0.0000 4 6 2.0434 -0.7308 -1.2446 5 1 1.7653 -0.1696 -2.1368 6 7 1.4513 -2.0694 -1.3048 7 6 1.3282 -2.6993 -2.4899 8 8 1.7072 -2.1577 -3.5067 9 6 0.7185 -4.0761 -2.5518 10 6 0.6964 -4.5592 -4.0034 11 6 0.0781 -5.9573 -4.0662 12 9 -1.2292 -5.9117 -3.5700 13 9 0.0573 -6.3989 -5.3935 14 9 0.8401 -6.8394 -3.2926 15 6 3.5674 -0.8493 -1.1693 16 6 3.9569 -1.6657 0.0652 17 6 3.4656 -0.9405 1.3273 18 7 2.0226 -0.6982 1.1952 19 6 1.1538 -1.1101 2.1702 20 1 0.1392 -1.3758 1.9124 21 6 1.5788 -1.1918 3.4891 22 7 2.6871 -0.5878 3.8620 23 14 0.5777 -2.1590 4.7349 24 1 -0.6154 -2.7393 4.0677 25 1 1.4104 -3.2524 5.2974 26 1 0.1427 -1.2549 5.8296 27 1 -0.3633 0.5093 0.8926 28 1 -0.3634 0.5183 -0.8874 29 1 -0.3634 -1.0277 -0.0052 30 1 1.1477 -2.5025 -0.4917 31 1 1.3116 -4.7635 -1.9487 32 1 -0.3002 -4.0401 -2.1658 33 1 0.1031 -3.8717 -4.6062 34 1 1.7150 -4.5952 -4.3899 35 1 3.9377 -1.3472 -2.0655 36 1 4.0060 0.1460 -1.0995 37 1 3.4982 -2.6529 0.0081 38 1 5.0412 -1.7695 0.1055 39 1 3.9877 0.0106 1.4322 40 1 3.6533 -1.5612 2.2035 41 1 2.9843 -0.6452 4.7836 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001755732411.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:37:22 Heat of formation + Delta-G solvation = -187.108443 kcal Electronic energy + Delta-G solvation = -26828.462831 eV Core-core repulsion = 22521.228396 eV Total energy + Delta-G solvation = -4307.234435 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 308.145 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -50.27119 -47.77295 -47.74179 -39.89126 -37.78581 -34.08980 -33.76906 -32.44014 -31.73911 -29.58674 -27.27639 -26.09884 -25.05770 -23.03404 -21.92894 -20.88340 -20.27330 -18.80879 -18.72938 -18.63501 -17.70921 -16.49279 -16.43506 -15.78682 -15.41035 -14.96278 -14.65549 -14.63338 -14.19329 -14.07623 -13.95907 -13.90745 -13.86020 -13.74770 -13.29280 -13.05227 -12.98242 -12.60970 -12.44514 -11.98036 -11.83663 -11.57215 -11.31475 -11.28557 -11.03716 -10.75675 -10.67825 -10.56213 -10.16755 -10.07263 -9.74744 -9.65284 -9.35838 -8.63257 -8.51834 -6.74181 -5.87372 -3.32845 2.55528 2.81367 3.30184 3.34208 3.38696 3.39963 3.72370 3.89354 3.95299 4.39917 4.59731 4.77558 5.01802 5.23381 5.26182 5.30534 5.44706 5.52753 5.56484 5.59937 5.68872 5.90219 6.06091 6.16485 6.25863 6.35530 6.47077 6.60566 6.61277 6.71741 6.87577 6.90656 7.02708 7.31437 7.60061 7.72385 7.89291 8.35690 8.48338 9.11791 9.74894 10.32024 11.20455 Molecular weight = 308.15amu Principal moments of inertia in cm(-1) A = 0.015736 B = 0.003991 C = 0.003550 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1778.980774 B = 7013.488007 C = 7885.753425 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.158 3.842 3 H 0.040 0.960 4 C 0.134 3.866 5 H 0.076 0.924 6 N -0.697 5.697 7 C 0.514 3.486 8 O -0.556 6.556 9 C -0.149 4.149 10 C -0.147 4.147 11 C 0.451 3.549 12 F -0.184 7.184 13 F -0.185 7.185 14 F -0.184 7.184 15 C -0.121 4.121 16 C -0.140 4.140 17 C 0.171 3.829 18 N -0.586 5.586 19 C -0.258 4.258 20 H 0.071 0.929 21 C 0.007 3.993 22 N -0.898 5.898 23 Si 0.899 3.101 24 H -0.277 1.277 25 H -0.289 1.289 26 H -0.291 1.291 27 H 0.064 0.936 28 H 0.039 0.961 29 H 0.053 0.947 30 H 0.410 0.590 31 H 0.105 0.895 32 H 0.105 0.895 33 H 0.116 0.884 34 H 0.116 0.884 35 H 0.050 0.950 36 H 0.062 0.938 37 H 0.053 0.947 38 H 0.047 0.953 39 H 0.018 0.982 40 H 0.086 0.914 41 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.156 -7.094 -12.988 15.132 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.051 3.949 3 H 0.057 0.943 4 C 0.028 3.972 5 H 0.094 0.906 6 N -0.347 5.347 7 C 0.299 3.701 8 O -0.436 6.436 9 C -0.189 4.189 10 C -0.186 4.186 11 C 0.397 3.603 12 F -0.166 7.166 13 F -0.167 7.167 14 F -0.165 7.165 15 C -0.159 4.159 16 C -0.180 4.180 17 C 0.046 3.954 18 N -0.310 5.310 19 C -0.387 4.387 20 H 0.089 0.911 21 C -0.192 4.192 22 N -0.542 5.542 23 Si 0.729 3.271 24 H -0.202 1.202 25 H -0.216 1.216 26 H -0.218 1.218 27 H 0.083 0.917 28 H 0.058 0.942 29 H 0.072 0.928 30 H 0.247 0.753 31 H 0.124 0.876 32 H 0.123 0.877 33 H 0.135 0.865 34 H 0.134 0.866 35 H 0.068 0.932 36 H 0.081 0.919 37 H 0.072 0.928 38 H 0.065 0.935 39 H 0.036 0.964 40 H 0.104 0.896 41 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -2.842 -6.712 -13.501 15.343 hybrid contribution -0.593 -0.912 1.193 1.615 sum -3.436 -7.624 -12.308 14.880 Atomic orbital electron populations 1.21784 0.95609 1.01399 1.00521 1.20728 0.93383 0.93937 0.86860 0.94298 1.21554 0.92934 0.82912 0.99839 0.90565 1.45996 1.61104 1.18656 1.08991 1.20148 0.79020 0.86879 0.84008 1.90677 1.50920 1.67636 1.34358 1.21628 1.04493 0.96570 0.96213 1.22581 1.05412 0.90430 1.00142 1.20660 0.76619 0.89639 0.73337 1.93189 1.38866 1.96844 1.87660 1.93185 1.96391 1.91268 1.35834 1.93193 1.75604 1.72230 1.75495 1.21769 0.95438 1.00515 0.98216 1.22216 0.98942 0.99508 0.97290 1.20890 0.83132 0.97123 0.94304 1.44193 1.03074 1.64997 1.18727 1.19177 0.95148 1.38182 0.86195 0.91138 1.25096 0.97783 0.99350 0.97005 1.70033 1.24124 1.43322 1.16741 0.86290 0.79578 0.79667 0.81587 1.20230 1.21611 1.21762 0.91729 0.94216 0.92813 0.75315 0.87635 0.87676 0.86547 0.86562 0.93151 0.91911 0.92841 0.93476 0.96355 0.89571 0.93649 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.32 7.73 37.16 0.29 -2.04 16 2 C 0.16 2.97 3.20 -67.60 -0.22 2.75 16 3 H 0.04 0.77 8.14 -51.93 -0.42 0.35 16 4 C 0.13 2.23 2.33 -67.81 -0.16 2.07 16 5 H 0.08 1.28 7.58 -51.93 -0.39 0.89 16 6 N -0.70 -10.54 3.45 -53.69 -0.19 -10.73 16 7 C 0.51 7.24 7.80 -10.99 -0.09 7.15 16 8 O -0.56 -9.37 15.64 5.56 0.09 -9.29 16 9 C -0.15 -1.55 5.46 -27.88 -0.15 -1.70 16 10 C -0.15 -1.40 4.55 -26.73 -0.12 -1.52 16 11 C 0.45 4.47 3.16 37.16 0.12 4.58 16 12 F -0.18 -1.95 16.80 2.25 0.04 -1.91 16 13 F -0.19 -1.94 17.32 2.25 0.04 -1.90 16 14 F -0.18 -1.97 16.80 2.25 0.04 -1.93 16 15 C -0.12 -2.03 5.58 -26.69 -0.15 -2.18 16 16 C -0.14 -2.53 5.95 -26.38 -0.16 -2.69 16 17 C 0.17 3.76 5.32 -3.49 -0.02 3.74 16 18 N -0.59 -12.91 2.64 -164.52 -0.43 -13.35 16 19 C -0.26 -6.24 8.57 -15.06 -0.13 -6.37 16 20 H 0.07 1.65 6.24 -52.49 -0.33 1.33 16 21 C 0.01 0.18 4.93 -17.43 -0.09 0.09 16 22 N -0.90 -24.55 11.22 55.49 0.62 -23.92 16 23 Si 0.90 20.33 29.58 -169.99 -5.03 15.30 16 24 H -0.28 -6.08 7.11 56.52 0.40 -5.68 16 25 H -0.29 -6.65 7.11 56.52 0.40 -6.25 16 26 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 27 H 0.06 1.21 7.62 -51.93 -0.40 0.81 16 28 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 29 H 0.05 0.90 6.39 -51.93 -0.33 0.56 16 30 H 0.41 6.35 7.77 -40.82 -0.32 6.03 16 31 H 0.11 1.01 7.80 -51.93 -0.41 0.60 16 32 H 0.10 0.97 7.80 -51.93 -0.41 0.56 16 33 H 0.12 1.07 8.10 -51.93 -0.42 0.65 16 34 H 0.12 1.09 8.10 -51.93 -0.42 0.67 16 35 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 36 H 0.06 1.04 8.14 -51.93 -0.42 0.61 16 37 H 0.05 0.96 7.53 -51.93 -0.39 0.57 16 38 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 39 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 40 H 0.09 2.14 6.12 -51.92 -0.32 1.83 16 41 H 0.25 6.77 8.31 -40.82 -0.34 6.43 16 LS Contribution 337.55 15.07 5.09 5.09 Total: -1.00 -27.74 337.55 -6.40 -34.14 By element: Atomic # 1 Polarization: 10.38 SS G_CDS: -5.80 Total: 4.59 kcal Atomic # 6 Polarization: 4.78 SS G_CDS: -0.87 Total: 3.91 kcal Atomic # 7 Polarization: -48.00 SS G_CDS: 0.00 Total: -48.00 kcal Atomic # 8 Polarization: -9.37 SS G_CDS: 0.09 Total: -9.29 kcal Atomic # 9 Polarization: -5.86 SS G_CDS: 0.11 Total: -5.74 kcal Atomic # 14 Polarization: 20.33 SS G_CDS: -5.03 Total: 15.30 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -27.74 -6.40 -34.14 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755732411.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -152.967 kcal (2) G-P(sol) polarization free energy of solvation -27.739 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -180.706 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.402 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.141 kcal (6) G-S(sol) free energy of system = (1) + (5) -187.108 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds