Wall clock time and date at job start Tue Mar 31 2020 10:37:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09003 * 109.58533 * 2 1 4 4 C 1.53192 * 109.58336 * 239.57879 * 2 1 3 5 5 H 1.09005 * 109.50202 * 65.59016 * 4 2 1 6 6 N 1.46496 * 109.49945 * 305.52841 * 4 2 1 7 7 C 1.34780 * 120.00523 * 155.00048 * 6 4 2 8 8 O 1.21281 * 119.99652 * 359.97438 * 7 6 4 9 9 C 1.50697 * 120.00216 * 180.02562 * 7 6 4 10 10 C 1.53005 * 109.46848 * 179.97438 * 9 7 6 11 11 C 1.52997 * 109.46948 * 179.97438 * 10 9 7 12 12 F 1.39901 * 109.47460 * 60.00034 * 11 10 9 13 13 F 1.39898 * 109.47379 * 179.97438 * 11 10 9 14 14 F 1.39901 * 109.47046 * 299.99869 * 11 10 9 15 15 C 1.53039 * 109.31389 * 185.57409 * 4 2 1 16 16 C 1.53047 * 109.53603 * 61.36708 * 15 4 2 17 17 C 1.53621 * 109.23718 * 298.51277 * 16 15 4 18 18 N 1.46917 * 108.54954 * 54.85791 * 17 16 15 19 19 C 1.36934 * 120.63785 * 126.36677 * 18 17 16 20 20 H 1.08001 * 120.00467 * 209.46644 * 19 18 17 21 21 C 1.38811 * 119.99680 * 29.18144 * 19 18 17 22 22 N 1.31615 * 119.99984 * 16.09560 * 21 19 18 23 23 Si 1.86801 * 120.00150 * 196.10072 * 21 19 18 24 24 H 1.48505 * 109.46984 * 0.02562 * 23 21 19 25 25 H 1.48498 * 109.47264 * 119.99952 * 23 21 19 26 26 H 1.48498 * 109.47080 * 239.99980 * 23 21 19 27 27 H 1.09001 * 109.46820 * 299.71089 * 1 2 3 28 28 H 1.09003 * 109.47653 * 59.70910 * 1 2 3 29 29 H 1.09003 * 109.47404 * 179.71145 * 1 2 3 30 30 H 0.96999 * 120.00390 * 335.00293 * 6 4 2 31 31 H 1.09003 * 109.46920 * 299.99653 * 9 7 6 32 32 H 1.08996 * 109.47451 * 60.00228 * 9 7 6 33 33 H 1.09003 * 109.47098 * 299.99570 * 10 9 7 34 34 H 1.09001 * 109.47218 * 60.00257 * 10 9 7 35 35 H 1.09001 * 109.46394 * 181.38327 * 15 4 2 36 36 H 1.08996 * 109.46128 * 301.35940 * 15 4 2 37 37 H 1.09004 * 109.49467 * 58.58488 * 16 15 4 38 38 H 1.09003 * 109.49708 * 178.68239 * 16 15 4 39 39 H 1.09001 * 109.74256 * 295.11479 * 17 16 15 40 40 H 1.09010 * 109.66427 * 174.55112 * 17 16 15 41 41 H 0.97003 * 119.99967 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8954 1.0270 0.0000 4 6 2.0434 -0.7308 -1.2446 5 1 1.7653 -0.1696 -2.1368 6 7 1.4513 -2.0694 -1.3048 7 6 1.3282 -2.6993 -2.4899 8 8 1.7072 -2.1577 -3.5067 9 6 0.7185 -4.0761 -2.5518 10 6 0.6964 -4.5592 -4.0034 11 6 0.0781 -5.9573 -4.0662 12 9 -1.2292 -5.9117 -3.5700 13 9 0.0573 -6.3989 -5.3935 14 9 0.8401 -6.8394 -3.2926 15 6 3.5674 -0.8493 -1.1693 16 6 3.9569 -1.6657 0.0652 17 6 3.4656 -0.9405 1.3273 18 7 2.0226 -0.6982 1.1952 19 6 1.1538 -1.1101 2.1702 20 1 0.1392 -1.3758 1.9124 21 6 1.5788 -1.1918 3.4891 22 7 2.6871 -0.5878 3.8620 23 14 0.5777 -2.1590 4.7349 24 1 -0.6154 -2.7393 4.0677 25 1 1.4104 -3.2524 5.2974 26 1 0.1427 -1.2549 5.8296 27 1 -0.3633 0.5093 0.8926 28 1 -0.3634 0.5183 -0.8874 29 1 -0.3634 -1.0277 -0.0052 30 1 1.1477 -2.5025 -0.4917 31 1 1.3116 -4.7635 -1.9487 32 1 -0.3002 -4.0401 -2.1658 33 1 0.1031 -3.8717 -4.6062 34 1 1.7150 -4.5952 -4.3899 35 1 3.9377 -1.3472 -2.0655 36 1 4.0060 0.1460 -1.0995 37 1 3.4982 -2.6529 0.0081 38 1 5.0412 -1.7695 0.1055 39 1 3.9877 0.0106 1.4322 40 1 3.6533 -1.5612 2.2035 41 1 2.9843 -0.6452 4.7836 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001755732411.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:37:22 Heat of formation + Delta-G solvation = -201.948536 kcal Electronic energy + Delta-G solvation = -26829.106345 eV Core-core repulsion = 22521.228396 eV Total energy + Delta-G solvation = -4307.877950 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 308.145 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -51.06746 -48.57300 -48.54322 -41.14510 -39.21561 -35.62055 -34.69003 -33.94049 -33.34406 -31.16913 -28.37843 -27.47330 -26.77507 -24.11945 -23.32171 -22.35721 -21.49648 -20.26371 -19.51918 -19.49025 -18.58228 -18.21558 -17.50256 -17.04863 -16.75326 -16.43251 -15.75164 -15.58900 -15.48332 -15.23832 -15.08552 -14.97520 -14.80527 -14.70114 -14.68789 -14.44864 -14.25928 -14.03635 -13.57930 -13.22930 -12.94117 -12.88129 -12.70992 -12.70385 -12.41267 -12.33326 -12.28274 -12.14204 -11.88141 -11.64949 -11.34551 -11.00052 -10.84503 -10.48685 -9.87259 -8.59209 -7.79904 -5.26194 1.49967 1.54266 1.61657 1.71194 1.74975 2.32673 2.55727 2.91914 3.08676 3.12598 3.36878 3.61957 3.74594 3.97430 4.01430 4.11530 4.14565 4.24856 4.42278 4.49127 4.60567 4.69128 4.70874 4.80790 4.86150 4.98145 5.02998 5.07179 5.16426 5.26057 5.37813 5.49786 5.57982 5.68267 5.77514 5.82519 6.46462 6.71062 7.21541 7.33149 7.92028 8.45139 9.26675 Molecular weight = 308.15amu Principal moments of inertia in cm(-1) A = 0.015736 B = 0.003991 C = 0.003550 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1778.980774 B = 7013.488007 C = 7885.753425 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C 0.155 3.845 3 H 0.027 0.973 4 C 0.144 3.856 5 H 0.081 0.919 6 N -0.698 5.698 7 C 0.517 3.483 8 O -0.582 6.582 9 C -0.143 4.143 10 C -0.141 4.141 11 C 0.457 3.543 12 F -0.187 7.187 13 F -0.189 7.189 14 F -0.188 7.188 15 C -0.115 4.115 16 C -0.126 4.126 17 C 0.178 3.822 18 N -0.596 5.596 19 C -0.244 4.244 20 H 0.082 0.918 21 C -0.049 4.049 22 N -0.937 5.937 23 Si 0.956 3.044 24 H -0.260 1.260 25 H -0.297 1.297 26 H -0.302 1.302 27 H 0.044 0.956 28 H 0.064 0.936 29 H 0.060 0.940 30 H 0.410 0.590 31 H 0.118 0.882 32 H 0.122 0.878 33 H 0.121 0.879 34 H 0.118 0.882 35 H 0.058 0.942 36 H 0.063 0.937 37 H 0.057 0.943 38 H 0.059 0.941 39 H -0.008 1.008 40 H 0.054 0.946 41 H 0.245 0.755 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.303 -8.227 -14.530 17.243 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.048 3.952 3 H 0.045 0.955 4 C 0.038 3.962 5 H 0.099 0.901 6 N -0.349 5.349 7 C 0.305 3.695 8 O -0.463 6.463 9 C -0.182 4.182 10 C -0.180 4.180 11 C 0.403 3.597 12 F -0.169 7.169 13 F -0.170 7.170 14 F -0.170 7.170 15 C -0.154 4.154 16 C -0.165 4.165 17 C 0.052 3.948 18 N -0.320 5.320 19 C -0.375 4.375 20 H 0.100 0.900 21 C -0.244 4.244 22 N -0.583 5.583 23 Si 0.786 3.214 24 H -0.184 1.184 25 H -0.225 1.225 26 H -0.230 1.230 27 H 0.063 0.937 28 H 0.083 0.917 29 H 0.079 0.921 30 H 0.247 0.753 31 H 0.136 0.864 32 H 0.140 0.860 33 H 0.139 0.861 34 H 0.136 0.864 35 H 0.077 0.923 36 H 0.081 0.919 37 H 0.075 0.925 38 H 0.078 0.922 39 H 0.010 0.990 40 H 0.072 0.928 41 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges -4.016 -7.862 -15.078 17.472 hybrid contribution -0.241 -0.514 1.600 1.698 sum -4.257 -8.375 -13.478 16.429 Atomic orbital electron populations 1.21703 0.94122 1.01906 1.00783 1.20862 0.94624 0.93328 0.86365 0.95511 1.21278 0.92730 0.83765 0.98459 0.90088 1.45965 1.61295 1.18090 1.09512 1.20649 0.78164 0.87762 0.82967 1.90673 1.51989 1.68585 1.35085 1.21622 1.05270 0.94245 0.97101 1.22534 1.05644 0.90108 0.99669 1.20639 0.76380 0.89597 0.73050 1.93186 1.39146 1.96850 1.87685 1.93181 1.96392 1.91318 1.36113 1.93187 1.75705 1.72468 1.75604 1.21718 0.95681 1.00378 0.97600 1.22019 0.99623 0.99156 0.95664 1.20668 0.83354 0.95631 0.95101 1.44374 1.02846 1.65518 1.19247 1.19533 0.95590 1.35970 0.86367 0.90000 1.25754 0.98914 1.00939 0.98843 1.70187 1.26075 1.45614 1.16447 0.85367 0.78724 0.77960 0.79337 1.18431 1.22452 1.23005 0.93652 0.91746 0.92134 0.75332 0.86413 0.86023 0.86091 0.86354 0.92348 0.91865 0.92467 0.92236 0.98983 0.92760 0.94556 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.12 7.73 71.98 0.56 -3.56 16 2 C 0.15 5.63 3.20 44.97 0.14 5.77 16 3 H 0.03 1.06 8.14 -2.39 -0.02 1.04 16 4 C 0.14 4.52 2.33 45.07 0.10 4.63 16 5 H 0.08 2.53 7.58 -2.38 -0.02 2.51 16 6 N -0.70 -19.34 3.45 -442.17 -1.53 -20.87 16 7 C 0.52 13.10 7.80 87.66 0.68 13.79 16 8 O -0.58 -18.10 15.64 -3.03 -0.05 -18.15 16 9 C -0.14 -2.52 5.46 29.85 0.16 -2.35 16 10 C -0.14 -2.30 4.55 30.59 0.14 -2.16 16 11 C 0.46 7.94 3.16 71.98 0.23 8.17 16 12 F -0.19 -3.49 16.80 44.97 0.76 -2.74 16 13 F -0.19 -3.56 17.32 44.97 0.78 -2.78 16 14 F -0.19 -3.59 16.80 44.97 0.76 -2.84 16 15 C -0.12 -3.67 5.58 30.62 0.17 -3.50 16 16 C -0.13 -4.39 5.95 30.82 0.18 -4.20 16 17 C 0.18 7.94 5.32 86.51 0.46 8.40 16 18 N -0.60 -26.08 2.64 -674.41 -1.78 -27.86 16 19 C -0.24 -11.70 8.57 84.03 0.72 -10.98 16 20 H 0.08 3.69 6.24 -2.91 -0.02 3.68 16 21 C -0.05 -2.54 4.93 84.86 0.42 -2.12 16 22 N -0.94 -52.64 11.22 21.65 0.24 -52.40 16 23 Si 0.96 41.99 29.58 68.60 2.03 44.02 16 24 H -0.26 -10.56 7.11 99.48 0.71 -9.85 16 25 H -0.30 -13.30 7.11 99.48 0.71 -12.59 16 26 H -0.30 -13.73 7.11 99.48 0.71 -13.03 16 27 H 0.04 1.63 7.62 -2.39 -0.02 1.61 16 28 H 0.06 1.76 8.14 -2.39 -0.02 1.74 16 29 H 0.06 1.86 6.39 -2.39 -0.02 1.85 16 30 H 0.41 11.62 7.77 -92.71 -0.72 10.90 16 31 H 0.12 1.85 7.80 -2.39 -0.02 1.83 16 32 H 0.12 1.80 7.80 -2.39 -0.02 1.78 16 33 H 0.12 1.90 8.10 -2.39 -0.02 1.88 16 34 H 0.12 1.92 8.10 -2.39 -0.02 1.90 16 35 H 0.06 1.80 8.14 -2.39 -0.02 1.78 16 36 H 0.06 2.01 8.14 -2.39 -0.02 1.99 16 37 H 0.06 1.96 7.53 -2.39 -0.02 1.94 16 38 H 0.06 1.93 8.14 -2.39 -0.02 1.91 16 39 H -0.01 -0.39 8.14 -2.39 -0.02 -0.41 16 40 H 0.05 2.77 6.12 -2.38 -0.01 2.76 16 41 H 0.25 13.58 8.31 -92.71 -0.77 12.81 16 Total: -1.00 -59.24 337.55 5.51 -53.72 By element: Atomic # 1 Polarization: 17.68 SS G_CDS: 0.33 Total: 18.02 kcal Atomic # 6 Polarization: 7.91 SS G_CDS: 3.97 Total: 11.88 kcal Atomic # 7 Polarization: -98.06 SS G_CDS: -3.06 Total: -101.13 kcal Atomic # 8 Polarization: -18.10 SS G_CDS: -0.05 Total: -18.15 kcal Atomic # 9 Polarization: -10.65 SS G_CDS: 2.29 Total: -8.36 kcal Atomic # 14 Polarization: 41.99 SS G_CDS: 2.03 Total: 44.02 kcal Total: -59.24 5.51 -53.72 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755732411.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -148.225 kcal (2) G-P(sol) polarization free energy of solvation -59.236 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -207.462 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.513 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.723 kcal (6) G-S(sol) free energy of system = (1) + (5) -201.949 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds