Wall clock time and date at job start Tue Mar 31 2020 10:30:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 O 1.42898 * 109.47319 * 2 1 4 4 C 1.35975 * 117.00473 * 180.02562 * 3 2 1 5 5 C 1.38709 * 119.97020 * 359.97438 * 4 3 2 6 6 C 1.38265 * 120.12282 * 179.97438 * 5 4 3 7 7 C 1.38475 * 120.07272 * 0.02562 * 6 5 4 8 8 O 1.36090 * 120.02999 * 180.02562 * 7 6 5 9 9 C 1.42902 * 116.99715 * 359.97438 * 8 7 6 10 10 C 1.52993 * 109.47072 * 179.97438 * 9 8 7 11 11 C 1.39301 * 119.94427 * 0.02562 * 7 6 5 12 12 N 1.39949 * 120.05804 * 180.02562 * 11 7 6 13 13 C 1.46501 * 120.00014 * 179.97438 * 12 11 7 14 14 C 1.50703 * 109.46985 * 179.97438 * 13 12 11 15 15 O 1.21298 * 119.99930 * 0.02562 * 14 13 12 16 16 N 1.34774 * 119.99978 * 179.97438 * 14 13 12 17 17 C 1.37093 * 120.00369 * 180.02562 * 16 14 13 18 18 H 1.08002 * 119.99818 * 0.02562 * 17 16 14 19 19 C 1.38953 * 120.00227 * 180.02562 * 17 16 14 20 20 N 1.31409 * 119.99849 * 359.97438 * 19 17 16 21 21 Si 1.86803 * 119.99962 * 180.02562 * 19 17 16 22 22 H 1.48506 * 109.47196 * 59.99752 * 21 19 17 23 23 H 1.48495 * 109.46986 * 180.02562 * 21 19 17 24 24 H 1.48506 * 109.46919 * 299.99820 * 21 19 17 25 25 C 1.38635 * 119.97881 * 179.72685 * 4 3 2 26 26 H 1.09002 * 109.47153 * 300.00307 * 1 2 3 27 27 H 1.08998 * 109.47533 * 59.99936 * 1 2 3 28 28 H 1.08996 * 109.47853 * 180.02562 * 1 2 3 29 29 H 1.09002 * 109.47153 * 239.99693 * 2 1 3 30 30 H 1.09001 * 109.46832 * 119.99884 * 2 1 3 31 31 H 1.08000 * 119.93727 * 0.02562 * 5 4 3 32 32 H 1.07998 * 119.96580 * 180.02562 * 6 5 4 33 33 H 1.08999 * 109.47532 * 300.00203 * 9 8 7 34 34 H 1.09007 * 109.46744 * 59.99806 * 9 8 7 35 35 H 1.09003 * 109.47057 * 179.97438 * 10 9 8 36 36 H 1.08997 * 109.47689 * 299.99926 * 10 9 8 37 37 H 1.08998 * 109.47490 * 60.00459 * 10 9 8 38 38 H 0.97002 * 119.99874 * 359.97438 * 12 11 7 39 39 H 1.09004 * 109.46702 * 299.99353 * 13 12 11 40 40 H 1.08997 * 109.47054 * 59.99574 * 13 12 11 41 41 H 0.96999 * 119.99830 * 359.97438 * 16 14 13 42 42 H 0.96997 * 119.99528 * 180.02562 * 20 19 17 43 43 H 1.07997 * 120.03854 * 359.97438 * 25 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3472 0.0000 4 6 3.3544 1.5255 -0.0005 5 6 4.1988 0.4250 -0.0005 6 6 5.5700 0.6026 -0.0016 7 6 6.1043 1.8802 -0.0022 8 8 7.4540 2.0539 -0.0038 9 6 8.2600 0.8739 -0.0042 10 6 9.7387 1.2663 -0.0067 11 6 5.2589 2.9874 -0.0011 12 7 5.7963 4.2796 -0.0022 13 6 4.9061 5.4431 -0.0017 14 6 5.7293 6.7054 -0.0025 15 8 6.9405 6.6396 -0.0039 16 7 5.1197 7.9074 -0.0027 17 6 5.8685 9.0558 -0.0039 18 1 6.9470 8.9972 -0.0052 19 6 5.2400 10.2951 -0.0036 20 7 3.9279 10.3663 -0.0026 21 14 6.2604 11.8598 -0.0060 22 1 7.1154 11.8914 -1.2199 23 1 5.3581 13.0391 -0.0046 24 1 7.1191 11.8926 1.2052 25 6 3.8837 2.8068 -0.0063 26 1 -0.3633 0.5139 0.8900 27 1 -0.3634 0.5138 -0.8899 28 1 -0.3635 -1.0276 0.0005 29 1 1.8933 -0.5139 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 3.7845 -0.5723 -0.0005 32 1 6.2251 -0.2560 -0.0020 33 1 8.0417 0.2843 0.8862 34 1 8.0395 0.2837 -0.8938 35 1 10.3535 0.3662 -0.0066 36 1 9.9569 1.8556 -0.8973 37 1 9.9595 1.8567 0.8826 38 1 6.7582 4.4048 -0.0034 39 1 4.2763 5.4191 -0.8911 40 1 4.2782 5.4197 0.8890 41 1 4.1512 7.9600 -0.0027 42 1 3.4892 11.2314 -0.0027 43 1 3.2261 3.6634 -0.0108 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000020044070.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:30:13 Heat of formation + Delta-G solvation = -91.104197 kcal Electronic energy + Delta-G solvation = -24720.527571 eV Core-core repulsion = 20959.312933 eV Total energy + Delta-G solvation = -3761.214638 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 308.157 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.40466 -39.00199 -38.41528 -36.82660 -34.70639 -33.86490 -32.08608 -31.54347 -31.33242 -29.73835 -28.54300 -26.54369 -24.63003 -23.71496 -23.65504 -21.63448 -20.92100 -19.39556 -18.51806 -17.99928 -17.72852 -16.73690 -16.20231 -15.96126 -15.77526 -14.94133 -14.89472 -14.70591 -14.50445 -14.33092 -13.84146 -13.59612 -13.57706 -13.19314 -12.98279 -12.72518 -12.58387 -12.39652 -12.33784 -12.14478 -11.83964 -11.65918 -11.58931 -11.37737 -11.09606 -11.01096 -10.65778 -10.47914 -10.31691 -10.27360 -9.79467 -9.57965 -8.56691 -8.06714 -8.02210 -6.90030 -6.48131 -3.89707 1.52345 1.72743 3.14675 3.16555 3.23505 3.27146 3.30839 3.76870 3.78322 3.94041 4.16638 4.73790 4.75374 4.87739 4.88414 4.91400 5.00813 5.05176 5.15164 5.17804 5.19960 5.23086 5.37972 5.53234 5.59737 5.61946 5.74212 5.77791 5.83516 5.85074 5.92471 5.95851 6.03119 6.15950 6.37262 6.45357 6.64754 7.28501 7.46210 7.49355 7.75183 7.97413 8.20101 8.50269 9.08807 9.43420 9.92382 10.68953 Molecular weight = 308.16amu Principal moments of inertia in cm(-1) A = 0.011793 B = 0.003232 C = 0.002545 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2373.633604 B = 8660.218596 C =10997.497292 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.057 3.943 3 O -0.317 6.317 4 C 0.147 3.853 5 C -0.242 4.242 6 C -0.124 4.124 7 C 0.019 3.981 8 O -0.316 6.316 9 C 0.061 3.939 10 C -0.153 4.153 11 C 0.247 3.753 12 N -0.713 5.713 13 C 0.111 3.889 14 C 0.431 3.569 15 O -0.592 6.592 16 N -0.552 5.552 17 C -0.304 4.304 18 H 0.104 0.896 19 C 0.026 3.974 20 N -0.897 5.897 21 Si 0.933 3.067 22 H -0.273 1.273 23 H -0.283 1.283 24 H -0.273 1.273 25 C -0.211 4.211 26 H 0.066 0.934 27 H 0.066 0.934 28 H 0.075 0.925 29 H 0.059 0.941 30 H 0.059 0.941 31 H 0.121 0.879 32 H 0.125 0.875 33 H 0.056 0.944 34 H 0.055 0.945 35 H 0.073 0.927 36 H 0.067 0.933 37 H 0.066 0.934 38 H 0.419 0.581 39 H 0.077 0.923 40 H 0.077 0.923 41 H 0.395 0.605 42 H 0.274 0.726 43 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.467 -22.356 -0.001 22.492 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.018 4.018 3 O -0.231 6.231 4 C 0.101 3.899 5 C -0.264 4.264 6 C -0.144 4.144 7 C -0.029 4.029 8 O -0.231 6.231 9 C -0.015 4.015 10 C -0.210 4.210 11 C 0.140 3.860 12 N -0.344 5.344 13 C -0.017 4.017 14 C 0.216 3.784 15 O -0.478 6.478 16 N -0.187 5.187 17 C -0.433 4.433 18 H 0.122 0.878 19 C -0.177 4.177 20 N -0.537 5.537 21 Si 0.760 3.240 22 H -0.198 1.198 23 H -0.209 1.209 24 H -0.198 1.198 25 C -0.235 4.235 26 H 0.085 0.915 27 H 0.085 0.915 28 H 0.094 0.906 29 H 0.077 0.923 30 H 0.077 0.923 31 H 0.139 0.861 32 H 0.143 0.857 33 H 0.074 0.926 34 H 0.074 0.926 35 H 0.092 0.908 36 H 0.086 0.914 37 H 0.086 0.914 38 H 0.258 0.742 39 H 0.095 0.905 40 H 0.095 0.905 41 H 0.229 0.771 42 H 0.084 0.916 43 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -1.948 -21.687 -0.002 21.774 hybrid contribution 0.165 0.366 0.002 0.401 sum -1.783 -21.321 0.001 21.395 Atomic orbital electron populations 1.21775 0.93044 1.02561 1.03590 1.22700 0.95545 0.82417 1.01178 1.86058 1.19331 1.28739 1.88950 1.18449 0.81821 0.93296 0.96340 1.20618 0.93234 0.97533 1.14972 1.20643 0.95352 0.94941 1.03472 1.18246 0.82607 0.92383 1.09659 1.86057 1.13792 1.33037 1.90226 1.22632 0.91116 0.87054 1.00654 1.21766 0.93012 1.02410 1.03816 1.16853 0.90345 0.83774 0.95076 1.44439 1.10056 1.00447 1.79481 1.20986 0.92986 0.85662 1.02098 1.19734 0.88625 0.84646 0.85365 1.90515 1.14079 1.86451 1.56769 1.41782 1.09568 1.04256 1.63099 1.19677 0.92904 0.82589 1.48179 0.87809 1.25300 0.95935 0.99571 0.96890 1.69602 1.07788 1.26726 1.49607 0.85885 0.79037 0.79966 0.79155 1.19798 1.20866 1.19803 1.19591 0.92190 0.95827 1.15905 0.91526 0.91521 0.90648 0.92269 0.92269 0.86066 0.85689 0.92624 0.92629 0.90783 0.91441 0.91448 0.74157 0.90496 0.90500 0.77122 0.91605 0.84492 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.09 10.28 37.16 0.38 -0.71 16 2 C 0.06 0.52 5.46 37.16 0.20 0.72 16 3 O -0.32 -4.13 10.14 -19.66 -0.20 -4.33 16 4 C 0.15 2.06 6.68 -39.26 -0.26 1.80 16 5 C -0.24 -3.01 9.03 -39.40 -0.36 -3.37 16 6 C -0.12 -1.58 9.03 -39.48 -0.36 -1.94 16 7 C 0.02 0.29 6.70 -39.10 -0.26 0.03 16 8 O -0.32 -4.76 9.38 -20.03 -0.19 -4.95 16 9 C 0.06 0.65 5.46 37.15 0.20 0.85 16 10 C -0.15 -1.43 10.28 37.15 0.38 -1.05 16 11 C 0.25 4.09 6.67 -83.59 -0.56 3.53 16 12 N -0.71 -13.10 5.70 -59.68 -0.34 -13.44 16 13 C 0.11 2.05 5.40 -5.19 -0.03 2.03 16 14 C 0.43 10.21 7.85 -10.99 -0.09 10.12 16 15 O -0.59 -16.02 15.24 5.54 0.08 -15.93 16 16 N -0.55 -13.90 5.29 -10.96 -0.06 -13.96 16 17 C -0.30 -8.42 9.68 -14.93 -0.14 -8.57 16 18 H 0.10 3.01 7.16 -52.49 -0.38 2.63 16 19 C 0.03 0.68 5.50 -17.47 -0.10 0.58 16 20 N -0.90 -24.13 13.05 55.50 0.72 -23.41 16 21 Si 0.93 20.88 29.55 -169.99 -5.02 15.85 16 22 H -0.27 -6.07 7.11 56.52 0.40 -5.67 16 23 H -0.28 -6.18 7.11 56.52 0.40 -5.77 16 24 H -0.27 -6.07 7.11 56.52 0.40 -5.67 16 25 C -0.21 -3.25 9.25 -39.26 -0.36 -3.62 16 26 H 0.07 0.50 8.14 -51.93 -0.42 0.07 16 27 H 0.07 0.50 8.14 -51.93 -0.42 0.07 16 28 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 29 H 0.06 0.48 7.66 -51.93 -0.40 0.08 16 30 H 0.06 0.48 7.66 -51.93 -0.40 0.08 16 31 H 0.12 1.19 6.28 -52.49 -0.33 0.86 16 32 H 0.13 1.25 6.29 -52.49 -0.33 0.92 16 33 H 0.06 0.52 7.66 -51.93 -0.40 0.12 16 34 H 0.06 0.52 7.66 -51.93 -0.40 0.12 16 35 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 36 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 37 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 38 H 0.42 8.42 6.79 -40.82 -0.28 8.14 16 39 H 0.08 1.29 7.94 -51.93 -0.41 0.88 16 40 H 0.08 1.29 7.96 -51.93 -0.41 0.88 16 41 H 0.40 9.45 7.90 -40.82 -0.32 9.13 16 42 H 0.27 6.98 8.31 -40.82 -0.34 6.64 16 43 H 0.14 2.04 6.73 -52.49 -0.35 1.69 16 LS Contribution 361.81 15.07 5.45 5.45 Total: -1.00 -31.58 361.81 -6.97 -38.54 By element: Atomic # 1 Polarization: 21.84 SS G_CDS: -6.08 Total: 15.76 kcal Atomic # 6 Polarization: 1.76 SS G_CDS: -1.34 Total: 0.42 kcal Atomic # 7 Polarization: -51.14 SS G_CDS: 0.33 Total: -50.81 kcal Atomic # 8 Polarization: -24.91 SS G_CDS: -0.30 Total: -25.21 kcal Atomic # 14 Polarization: 20.88 SS G_CDS: -5.02 Total: 15.85 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -31.58 -6.97 -38.54 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000020044070.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.561 kcal (2) G-P(sol) polarization free energy of solvation -31.576 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.137 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.967 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.543 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.104 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds