Wall clock time and date at job start Tue Mar 31 2020 10:30:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 O 1.42898 * 109.47319 * 2 1 4 4 C 1.35975 * 117.00473 * 180.02562 * 3 2 1 5 5 C 1.38709 * 119.97020 * 359.97438 * 4 3 2 6 6 C 1.38265 * 120.12282 * 179.97438 * 5 4 3 7 7 C 1.38475 * 120.07272 * 0.02562 * 6 5 4 8 8 O 1.36090 * 120.02999 * 180.02562 * 7 6 5 9 9 C 1.42902 * 116.99715 * 359.97438 * 8 7 6 10 10 C 1.52993 * 109.47072 * 179.97438 * 9 8 7 11 11 C 1.39301 * 119.94427 * 0.02562 * 7 6 5 12 12 N 1.39949 * 120.05804 * 180.02562 * 11 7 6 13 13 C 1.46501 * 120.00014 * 179.97438 * 12 11 7 14 14 C 1.50703 * 109.46985 * 179.97438 * 13 12 11 15 15 O 1.21298 * 119.99930 * 0.02562 * 14 13 12 16 16 N 1.34774 * 119.99978 * 179.97438 * 14 13 12 17 17 C 1.37093 * 120.00369 * 180.02562 * 16 14 13 18 18 H 1.08002 * 119.99818 * 0.02562 * 17 16 14 19 19 C 1.38953 * 120.00227 * 180.02562 * 17 16 14 20 20 N 1.31409 * 119.99849 * 359.97438 * 19 17 16 21 21 Si 1.86803 * 119.99962 * 180.02562 * 19 17 16 22 22 H 1.48506 * 109.47196 * 59.99752 * 21 19 17 23 23 H 1.48495 * 109.46986 * 180.02562 * 21 19 17 24 24 H 1.48506 * 109.46919 * 299.99820 * 21 19 17 25 25 C 1.38635 * 119.97881 * 179.72685 * 4 3 2 26 26 H 1.09002 * 109.47153 * 300.00307 * 1 2 3 27 27 H 1.08998 * 109.47533 * 59.99936 * 1 2 3 28 28 H 1.08996 * 109.47853 * 180.02562 * 1 2 3 29 29 H 1.09002 * 109.47153 * 239.99693 * 2 1 3 30 30 H 1.09001 * 109.46832 * 119.99884 * 2 1 3 31 31 H 1.08000 * 119.93727 * 0.02562 * 5 4 3 32 32 H 1.07998 * 119.96580 * 180.02562 * 6 5 4 33 33 H 1.08999 * 109.47532 * 300.00203 * 9 8 7 34 34 H 1.09007 * 109.46744 * 59.99806 * 9 8 7 35 35 H 1.09003 * 109.47057 * 179.97438 * 10 9 8 36 36 H 1.08997 * 109.47689 * 299.99926 * 10 9 8 37 37 H 1.08998 * 109.47490 * 60.00459 * 10 9 8 38 38 H 0.97002 * 119.99874 * 359.97438 * 12 11 7 39 39 H 1.09004 * 109.46702 * 299.99353 * 13 12 11 40 40 H 1.08997 * 109.47054 * 59.99574 * 13 12 11 41 41 H 0.96999 * 119.99830 * 359.97438 * 16 14 13 42 42 H 0.96997 * 119.99528 * 180.02562 * 20 19 17 43 43 H 1.07997 * 120.03854 * 359.97438 * 25 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3472 0.0000 4 6 3.3544 1.5255 -0.0005 5 6 4.1988 0.4250 -0.0005 6 6 5.5700 0.6026 -0.0016 7 6 6.1043 1.8802 -0.0022 8 8 7.4540 2.0539 -0.0038 9 6 8.2600 0.8739 -0.0042 10 6 9.7387 1.2663 -0.0067 11 6 5.2589 2.9874 -0.0011 12 7 5.7963 4.2796 -0.0022 13 6 4.9061 5.4431 -0.0017 14 6 5.7293 6.7054 -0.0025 15 8 6.9405 6.6396 -0.0039 16 7 5.1197 7.9074 -0.0027 17 6 5.8685 9.0558 -0.0039 18 1 6.9470 8.9972 -0.0052 19 6 5.2400 10.2951 -0.0036 20 7 3.9279 10.3663 -0.0026 21 14 6.2604 11.8598 -0.0060 22 1 7.1154 11.8914 -1.2199 23 1 5.3581 13.0391 -0.0046 24 1 7.1191 11.8926 1.2052 25 6 3.8837 2.8068 -0.0063 26 1 -0.3633 0.5139 0.8900 27 1 -0.3634 0.5138 -0.8899 28 1 -0.3635 -1.0276 0.0005 29 1 1.8933 -0.5139 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 3.7845 -0.5723 -0.0005 32 1 6.2251 -0.2560 -0.0020 33 1 8.0417 0.2843 0.8862 34 1 8.0395 0.2837 -0.8938 35 1 10.3535 0.3662 -0.0066 36 1 9.9569 1.8556 -0.8973 37 1 9.9595 1.8567 0.8826 38 1 6.7582 4.4048 -0.0034 39 1 4.2763 5.4191 -0.8911 40 1 4.2782 5.4197 0.8890 41 1 4.1512 7.9600 -0.0027 42 1 3.4892 11.2314 -0.0027 43 1 3.2261 3.6634 -0.0108 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000020044070.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:30:12 Heat of formation + Delta-G solvation = -112.735836 kcal Electronic energy + Delta-G solvation = -24721.465589 eV Core-core repulsion = 20959.312933 eV Total energy + Delta-G solvation = -3762.152656 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 308.157 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.46546 -40.30561 -39.91525 -37.98133 -36.26205 -35.57094 -33.39045 -32.84388 -32.32345 -30.94499 -29.67348 -28.02773 -26.29593 -24.78383 -24.44780 -22.63530 -22.01399 -21.13344 -20.05685 -19.61174 -18.69513 -18.05017 -17.36495 -17.07657 -16.80193 -16.54572 -16.31982 -16.24553 -15.94531 -15.44999 -15.42188 -14.85678 -14.67110 -14.24445 -13.93538 -13.81242 -13.75036 -13.54306 -13.42610 -13.32345 -13.08721 -12.95023 -12.75440 -12.59214 -12.48384 -12.22239 -12.14021 -11.77103 -11.58288 -11.57927 -11.29102 -10.86830 -10.54882 -10.10546 -9.13351 -8.51834 -8.08181 -6.01918 0.45006 0.63869 1.37003 1.40899 1.51971 1.91222 2.11579 2.28803 2.33361 2.61800 2.85231 3.15078 3.17602 3.83573 4.08210 4.11573 4.14765 4.15962 4.21115 4.27689 4.30384 4.36986 4.41816 4.46334 4.46601 4.57844 4.60562 4.78666 4.94005 4.96359 4.97206 5.01350 5.23629 5.25615 5.35768 5.36596 5.42575 5.61190 5.86976 6.13127 6.47680 6.50733 6.66783 6.81550 7.03502 7.43839 7.96355 8.64967 Molecular weight = 308.16amu Principal moments of inertia in cm(-1) A = 0.011793 B = 0.003232 C = 0.002545 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2373.633604 B = 8660.218596 C =10997.497292 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.046 3.954 3 O -0.334 6.334 4 C 0.138 3.862 5 C -0.229 4.229 6 C -0.118 4.118 7 C 0.005 3.995 8 O -0.344 6.344 9 C 0.051 3.949 10 C -0.151 4.151 11 C 0.219 3.781 12 N -0.728 5.728 13 C 0.128 3.872 14 C 0.430 3.570 15 O -0.629 6.629 16 N -0.559 5.559 17 C -0.340 4.340 18 H 0.081 0.919 19 C -0.008 4.008 20 N -0.915 5.915 21 Si 0.996 3.004 22 H -0.271 1.271 23 H -0.268 1.268 24 H -0.271 1.271 25 C -0.222 4.222 26 H 0.059 0.941 27 H 0.060 0.940 28 H 0.101 0.899 29 H 0.072 0.928 30 H 0.072 0.928 31 H 0.154 0.846 32 H 0.157 0.843 33 H 0.072 0.928 34 H 0.072 0.928 35 H 0.105 0.895 36 H 0.054 0.946 37 H 0.054 0.946 38 H 0.407 0.593 39 H 0.094 0.906 40 H 0.094 0.906 41 H 0.400 0.600 42 H 0.281 0.719 43 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.150 -24.544 -0.001 24.746 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.029 4.029 3 O -0.249 6.249 4 C 0.092 3.908 5 C -0.250 4.250 6 C -0.137 4.137 7 C -0.042 4.042 8 O -0.260 6.260 9 C -0.023 4.023 10 C -0.208 4.208 11 C 0.115 3.885 12 N -0.360 5.360 13 C 0.000 4.000 14 C 0.218 3.782 15 O -0.517 6.517 16 N -0.195 5.195 17 C -0.469 4.469 18 H 0.099 0.901 19 C -0.209 4.209 20 N -0.555 5.555 21 Si 0.819 3.181 22 H -0.196 1.196 23 H -0.193 1.193 24 H -0.196 1.196 25 C -0.246 4.246 26 H 0.079 0.921 27 H 0.079 0.921 28 H 0.120 0.880 29 H 0.091 0.909 30 H 0.091 0.909 31 H 0.171 0.829 32 H 0.174 0.826 33 H 0.090 0.910 34 H 0.090 0.910 35 H 0.123 0.877 36 H 0.073 0.927 37 H 0.073 0.927 38 H 0.244 0.756 39 H 0.112 0.888 40 H 0.112 0.888 41 H 0.234 0.766 42 H 0.090 0.910 43 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -2.685 -23.924 -0.001 24.074 hybrid contribution 0.331 0.861 0.002 0.923 sum -2.354 -23.063 0.001 23.183 Atomic orbital electron populations 1.21814 0.91840 1.04104 1.02990 1.23052 0.96589 0.80801 1.02410 1.86052 1.18673 1.31378 1.88783 1.18556 0.82717 0.93216 0.96297 1.21004 0.92927 0.98521 1.12521 1.21001 0.95989 0.94851 1.01879 1.18479 0.82853 0.92947 1.09952 1.86043 1.14024 1.35534 1.90361 1.22952 0.90988 0.86254 1.02145 1.21807 0.92941 1.03504 1.02585 1.17084 0.91129 0.83317 0.96987 1.44340 1.09165 1.01074 1.81379 1.20829 0.92219 0.83270 1.03671 1.20589 0.88593 0.85741 0.83321 1.90482 1.16071 1.87255 1.57891 1.41816 1.09652 1.04358 1.63656 1.19669 0.92352 0.84252 1.50662 0.90063 1.26094 0.97111 1.01979 0.95735 1.69662 1.08766 1.27826 1.49214 0.84957 0.77744 0.76414 0.79033 1.19604 1.19264 1.19615 1.19687 0.91855 0.96789 1.16255 0.92139 0.92133 0.88007 0.90939 0.90940 0.82861 0.82573 0.90989 0.90996 0.87694 0.92671 0.92681 0.75555 0.88783 0.88793 0.76576 0.90997 0.84841 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.81 10.28 71.98 0.74 -1.07 16 2 C 0.05 0.70 5.46 71.98 0.39 1.10 16 3 O -0.33 -8.18 10.14 -93.27 -0.95 -9.13 16 4 C 0.14 3.67 6.68 22.48 0.15 3.82 16 5 C -0.23 -5.01 9.03 22.39 0.20 -4.80 16 6 C -0.12 -2.69 9.03 22.33 0.20 -2.49 16 7 C 0.01 0.16 6.70 22.58 0.15 0.31 16 8 O -0.34 -10.33 9.38 -94.58 -0.89 -11.22 16 9 C 0.05 1.01 5.46 71.98 0.39 1.41 16 10 C -0.15 -2.69 10.28 71.98 0.74 -1.95 16 11 C 0.22 7.34 6.67 38.21 0.25 7.59 16 12 N -0.73 -27.64 5.70 -342.73 -1.95 -29.59 16 13 C 0.13 4.86 5.40 85.63 0.46 5.32 16 14 C 0.43 21.14 7.85 87.66 0.69 21.83 16 15 O -0.63 -35.58 15.24 -3.08 -0.05 -35.63 16 16 N -0.56 -29.07 5.29 -306.98 -1.62 -30.69 16 17 C -0.34 -19.41 9.68 84.04 0.81 -18.60 16 18 H 0.08 4.92 7.16 -2.91 -0.02 4.90 16 19 C -0.01 -0.45 5.50 84.93 0.47 0.02 16 20 N -0.91 -49.23 13.05 21.66 0.28 -48.94 16 21 Si 1.00 42.81 29.55 68.60 2.03 44.83 16 22 H -0.27 -11.52 7.11 99.48 0.71 -10.81 16 23 H -0.27 -10.81 7.11 99.48 0.71 -10.10 16 24 H -0.27 -11.53 7.11 99.48 0.71 -10.82 16 25 C -0.22 -6.81 9.25 22.48 0.21 -6.60 16 26 H 0.06 0.80 8.14 -2.39 -0.02 0.78 16 27 H 0.06 0.80 8.14 -2.39 -0.02 0.78 16 28 H 0.10 0.68 8.14 -2.39 -0.02 0.66 16 29 H 0.07 0.92 7.66 -2.39 -0.02 0.90 16 30 H 0.07 0.92 7.66 -2.39 -0.02 0.90 16 31 H 0.15 2.32 6.28 -2.91 -0.02 2.30 16 32 H 0.16 2.51 6.29 -2.91 -0.02 2.49 16 33 H 0.07 1.17 7.66 -2.39 -0.02 1.15 16 34 H 0.07 1.17 7.66 -2.38 -0.02 1.15 16 35 H 0.10 1.18 8.14 -2.39 -0.02 1.16 16 36 H 0.05 1.10 8.14 -2.39 -0.02 1.08 16 37 H 0.05 1.10 8.14 -2.39 -0.02 1.08 16 38 H 0.41 17.24 6.79 -92.71 -0.63 16.61 16 39 H 0.09 3.21 7.94 -2.38 -0.02 3.19 16 40 H 0.09 3.21 7.96 -2.39 -0.02 3.19 16 41 H 0.40 19.62 7.90 -92.71 -0.73 18.89 16 42 H 0.28 14.10 8.31 -92.71 -0.77 13.33 16 43 H 0.13 4.03 6.73 -2.91 -0.02 4.01 16 Total: -1.00 -70.04 361.81 2.40 -67.63 By element: Atomic # 1 Polarization: 47.15 SS G_CDS: -0.32 Total: 46.84 kcal Atomic # 6 Polarization: 0.02 SS G_CDS: 5.87 Total: 5.89 kcal Atomic # 7 Polarization: -105.93 SS G_CDS: -3.29 Total: -109.23 kcal Atomic # 8 Polarization: -54.09 SS G_CDS: -1.88 Total: -55.97 kcal Atomic # 14 Polarization: 42.81 SS G_CDS: 2.03 Total: 44.83 kcal Total: -70.04 2.40 -67.63 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000020044070.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.101 kcal (2) G-P(sol) polarization free energy of solvation -70.037 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.138 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.402 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.635 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.736 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds