Wall clock time and date at job start Tue Mar 31 2020 10:36:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 O 1.42903 * 109.47358 * 2 1 4 4 C 1.42898 * 114.00336 * 180.02562 * 3 2 1 5 5 C 1.52995 * 109.47593 * 180.02562 * 4 3 2 6 6 C 1.52990 * 109.47336 * 179.97438 * 5 4 3 7 7 N 1.46502 * 109.46969 * 179.97438 * 6 5 4 8 8 C 1.34781 * 119.99688 * 180.02562 * 7 6 5 9 9 O 1.21585 * 120.00226 * 0.02562 * 8 7 6 10 10 N 1.34781 * 119.99858 * 180.02562 * 8 7 6 11 11 C 1.40022 * 120.00176 * 175.49455 * 10 8 7 12 12 C 1.38908 * 120.00352 * 215.12379 * 11 10 8 13 13 C 1.38003 * 120.00179 * 180.02562 * 12 11 10 14 14 C 1.38899 * 119.99996 * 0.02562 * 13 12 11 15 15 O 1.35783 * 119.99801 * 179.97438 * 14 13 12 16 16 C 1.34820 * 117.00252 * 5.33726 * 15 14 13 17 17 H 1.08001 * 119.99593 * 354.96888 * 16 15 14 18 18 C 1.38634 * 120.00020 * 174.96470 * 16 15 14 19 19 N 1.31572 * 119.99774 * 0.02562 * 18 16 15 20 20 Si 1.86795 * 119.99661 * 179.97438 * 18 16 15 21 21 H 1.48498 * 109.47012 * 90.00521 * 20 18 16 22 22 H 1.48498 * 109.46951 * 210.00132 * 20 18 16 23 23 H 1.48501 * 109.47460 * 330.00194 * 20 18 16 24 24 C 1.38902 * 120.00661 * 0.26478 * 14 13 12 25 25 C 1.38008 * 119.99473 * 359.45951 * 24 14 13 26 26 H 1.09003 * 109.46983 * 59.99274 * 1 2 3 27 27 H 1.08995 * 109.47010 * 179.97438 * 1 2 3 28 28 H 1.08998 * 109.46850 * 299.99625 * 1 2 3 29 29 H 1.08998 * 109.46850 * 240.00375 * 2 1 3 30 30 H 1.09003 * 109.47377 * 120.00356 * 2 1 3 31 31 H 1.08996 * 109.46888 * 59.99955 * 4 3 2 32 32 H 1.09009 * 109.47103 * 300.00467 * 4 3 2 33 33 H 1.09002 * 109.46622 * 59.99872 * 5 4 3 34 34 H 1.09000 * 109.47086 * 300.00481 * 5 4 3 35 35 H 1.09002 * 109.47238 * 60.00410 * 6 5 4 36 36 H 1.09000 * 109.47557 * 300.00353 * 6 5 4 37 37 H 0.96993 * 120.00341 * 0.02562 * 7 6 5 38 38 H 0.96997 * 119.99675 * 355.48546 * 10 8 7 39 39 H 1.07998 * 119.99489 * 359.97438 * 12 11 10 40 40 H 1.08004 * 120.00410 * 179.97438 * 13 12 11 41 41 H 0.97004 * 119.99768 * 179.97438 * 19 18 16 42 42 H 1.07993 * 120.00563 * 179.70790 * 24 14 13 43 43 H 1.08001 * 120.00490 * 180.27632 * 25 24 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.4309 1.4601 -0.0006 5 6 3.8255 2.9383 0.0001 6 6 5.3506 3.0591 0.0001 7 7 5.7284 4.4746 0.0002 8 6 7.0300 4.8246 -0.0003 9 8 7.8905 3.9658 -0.0013 10 7 7.3775 6.1269 0.0003 11 6 8.7261 6.4915 0.0950 12 6 9.0888 7.6358 0.7940 13 6 10.4179 7.9955 0.8870 14 6 11.3929 7.2136 0.2810 15 8 12.7006 7.5678 0.3720 16 6 12.9954 8.6247 1.1553 17 1 12.2011 9.1976 1.6106 18 6 14.3181 8.9761 1.3765 19 7 15.2857 8.2783 0.8215 20 14 14.7265 10.4409 2.4612 21 1 14.8705 9.9897 3.8687 22 1 15.9996 11.0547 2.0055 23 1 13.6341 11.4429 2.3719 24 6 11.0299 6.0726 -0.4232 25 6 9.7013 5.7098 -0.5113 26 1 -0.3633 0.5140 -0.8899 27 1 -0.3633 -1.0276 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 1.8933 -0.5138 -0.8900 30 1 1.8934 -0.5139 0.8900 31 1 3.8333 0.9767 -0.8908 32 1 3.8341 0.9764 0.8892 33 1 3.4231 3.4213 0.8906 34 1 3.4223 3.4224 -0.8894 35 1 5.7534 2.5760 -0.8901 36 1 5.7535 2.5751 0.8898 37 1 5.0419 5.1598 0.0006 38 1 6.6934 6.8114 -0.0651 39 1 8.3305 8.2444 1.2641 40 1 10.6999 8.8854 1.4301 41 1 16.2112 8.5244 0.9759 42 1 11.7876 5.4673 -0.8982 43 1 9.4193 4.8202 -1.0550 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000043572772.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:36:41 Heat of formation + Delta-G solvation = -79.905799 kcal Electronic energy + Delta-G solvation = -23598.628362 eV Core-core repulsion = 19837.899323 eV Total energy + Delta-G solvation = -3760.729039 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 308.157 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -40.30755 -38.82082 -38.52565 -36.77750 -35.46751 -33.95688 -32.67691 -32.11134 -30.82983 -30.16218 -27.83576 -25.67629 -25.07724 -23.24697 -22.31914 -22.02599 -21.56483 -20.46184 -18.47992 -17.76176 -17.46374 -17.06462 -16.89530 -16.37278 -15.74384 -15.33431 -14.80601 -14.53577 -14.52278 -14.37596 -14.10919 -13.60391 -13.50673 -13.31576 -13.04755 -12.77765 -12.50019 -12.13445 -12.11997 -12.10680 -11.78709 -11.53147 -11.49484 -11.45071 -11.32590 -10.99588 -10.71554 -10.44296 -10.04796 -9.93291 -9.60407 -9.21613 -9.18139 -8.65716 -8.15325 -6.87217 -6.40777 -3.98897 2.20354 2.28119 2.61752 3.14334 3.15756 3.20487 3.26556 3.35414 3.99917 4.24996 4.49586 4.59127 4.60517 4.61721 4.67121 4.83511 4.91421 5.02121 5.11964 5.13317 5.25866 5.32718 5.38449 5.43536 5.59318 5.63987 5.69838 5.71346 5.83821 6.18092 6.24212 6.29065 6.34996 6.71926 6.74625 6.88859 6.96221 7.16294 7.26774 7.30016 7.47542 7.84940 8.03549 8.06888 8.69093 9.04669 9.75889 10.77344 Molecular weight = 308.16amu Principal moments of inertia in cm(-1) A = 0.052644 B = 0.001755 C = 0.001729 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 531.746901 B =15954.372127 C =16186.419719 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.057 3.943 3 O -0.391 6.391 4 C 0.066 3.934 5 C -0.130 4.130 6 C 0.142 3.858 7 N -0.749 5.749 8 C 0.699 3.301 9 O -0.575 6.575 10 N -0.675 5.675 11 C 0.053 3.947 12 C -0.092 4.092 13 C -0.220 4.220 14 C 0.146 3.854 15 O -0.178 6.178 16 C -0.391 4.391 17 H 0.092 0.908 18 C 0.039 3.961 19 N -0.863 5.863 20 Si 0.941 3.059 21 H -0.274 1.274 22 H -0.278 1.278 23 H -0.268 1.268 24 C -0.178 4.178 25 C -0.067 4.067 26 H 0.063 0.937 27 H 0.071 0.929 28 H 0.063 0.937 29 H 0.049 0.951 30 H 0.049 0.951 31 H 0.054 0.946 32 H 0.054 0.946 33 H 0.078 0.922 34 H 0.078 0.922 35 H 0.068 0.932 36 H 0.068 0.932 37 H 0.395 0.605 38 H 0.398 0.602 39 H 0.110 0.890 40 H 0.131 0.869 41 H 0.269 0.731 42 H 0.120 0.880 43 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.570 -10.193 -1.427 28.494 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.020 4.020 3 O -0.311 6.311 4 C -0.011 4.011 5 C -0.168 4.168 6 C 0.018 3.982 7 N -0.406 5.406 8 C 0.400 3.600 9 O -0.452 6.452 10 N -0.322 5.322 11 C -0.040 4.040 12 C -0.113 4.113 13 C -0.239 4.239 14 C 0.092 3.908 15 O -0.082 6.082 16 C -0.468 4.468 17 H 0.109 0.891 18 C -0.165 4.165 19 N -0.498 5.498 20 Si 0.765 3.235 21 H -0.199 1.199 22 H -0.203 1.203 23 H -0.192 1.192 24 C -0.198 4.198 25 C -0.087 4.087 26 H 0.082 0.918 27 H 0.090 0.910 28 H 0.082 0.918 29 H 0.067 0.933 30 H 0.067 0.933 31 H 0.072 0.928 32 H 0.072 0.928 33 H 0.096 0.904 34 H 0.096 0.904 35 H 0.086 0.914 36 H 0.087 0.913 37 H 0.229 0.771 38 H 0.232 0.768 39 H 0.128 0.872 40 H 0.149 0.851 41 H 0.079 0.921 42 H 0.138 0.862 43 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -25.443 -10.951 -1.527 27.741 hybrid contribution -0.382 1.188 0.623 1.395 sum -25.825 -9.763 -0.904 27.624 Atomic orbital electron populations 1.21750 0.93680 1.02320 1.03172 1.22471 0.95633 0.83613 1.00236 1.87856 1.21053 1.26681 1.95506 1.22320 0.81326 0.96629 1.00844 1.21666 0.94847 0.96162 1.04109 1.20976 0.93131 0.81325 1.02789 1.45018 1.05848 1.08282 1.81420 1.15939 0.82684 0.83210 0.78185 1.90932 1.48391 1.49110 1.56758 1.42288 1.07330 1.05504 1.77074 1.17046 0.81640 0.99258 1.06059 1.20451 0.95843 0.96688 0.98272 1.20949 0.91888 1.03359 1.07751 1.19416 0.85411 0.92487 0.93497 1.83994 1.18662 1.45840 1.59680 1.21309 0.92980 1.05458 1.27020 0.89113 1.25276 0.94417 0.99067 0.97790 1.70051 0.99845 1.38540 1.41349 0.85720 0.78453 0.79859 0.79422 1.19931 1.20305 1.19244 1.20154 0.95676 0.97744 1.06245 1.20777 0.91232 0.98948 0.97782 0.91832 0.91045 0.91823 0.93294 0.93286 0.92814 0.92809 0.90354 0.90358 0.91354 0.91328 0.77107 0.76839 0.87244 0.85138 0.92075 0.86163 0.85170 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.75 10.28 37.16 0.38 -0.37 16 2 C 0.06 0.34 6.66 37.16 0.25 0.59 16 3 O -0.39 -3.22 10.34 -35.23 -0.36 -3.59 16 4 C 0.07 0.45 5.94 37.15 0.22 0.67 16 5 C -0.13 -0.84 5.70 -26.74 -0.15 -1.00 16 6 C 0.14 1.25 5.67 -4.05 -0.02 1.22 16 7 N -0.75 -7.36 5.56 -65.23 -0.36 -7.72 16 8 C 0.70 10.23 8.41 -86.91 -0.73 9.50 16 9 O -0.58 -10.94 13.78 5.29 0.07 -10.87 16 10 N -0.67 -9.40 5.34 -14.18 -0.08 -9.48 16 11 C 0.05 0.96 6.30 -83.62 -0.53 0.43 16 12 C -0.09 -1.68 9.96 -39.42 -0.39 -2.07 16 13 C -0.22 -4.77 9.16 -39.42 -0.36 -5.13 16 14 C 0.15 3.60 6.65 -39.09 -0.26 3.34 16 15 O -0.18 -5.17 9.76 -0.03 0.00 -5.17 16 16 C -0.39 -11.01 9.48 30.88 0.29 -10.72 16 17 H 0.09 2.34 5.20 -52.49 -0.27 2.07 16 18 C 0.04 1.07 5.49 -17.52 -0.10 0.97 16 19 N -0.86 -25.56 13.67 55.48 0.76 -24.80 16 20 Si 0.94 20.61 29.55 -169.99 -5.02 15.59 16 21 H -0.27 -5.87 7.11 56.52 0.40 -5.47 16 22 H -0.28 -5.96 7.11 56.52 0.40 -5.56 16 23 H -0.27 -5.61 7.11 56.52 0.40 -5.21 16 24 C -0.18 -4.01 9.99 -39.42 -0.39 -4.41 16 25 C -0.07 -1.37 8.69 -39.41 -0.34 -1.71 16 26 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 27 H 0.07 0.24 8.14 -51.93 -0.42 -0.19 16 28 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 29 H 0.05 0.25 8.14 -51.93 -0.42 -0.17 16 30 H 0.05 0.26 8.14 -51.93 -0.42 -0.17 16 31 H 0.05 0.33 8.14 -51.93 -0.42 -0.10 16 32 H 0.05 0.33 8.14 -51.92 -0.42 -0.09 16 33 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 34 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 35 H 0.07 0.65 8.14 -51.93 -0.42 0.22 16 36 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16 37 H 0.40 2.62 8.49 -40.82 -0.35 2.28 16 38 H 0.40 3.96 8.84 -40.82 -0.36 3.60 16 39 H 0.11 1.61 8.06 -52.49 -0.42 1.19 16 40 H 0.13 2.80 5.63 -52.48 -0.30 2.50 16 41 H 0.27 7.32 8.31 -40.82 -0.34 6.98 16 42 H 0.12 2.63 8.06 -52.49 -0.42 2.21 16 43 H 0.13 2.62 6.23 -52.49 -0.33 2.29 16 LS Contribution 366.07 15.07 5.52 5.52 Total: -1.00 -34.75 366.07 -7.85 -42.60 By element: Atomic # 1 Polarization: 12.82 SS G_CDS: -6.23 Total: 6.59 kcal Atomic # 6 Polarization: -6.54 SS G_CDS: -2.14 Total: -8.67 kcal Atomic # 7 Polarization: -42.32 SS G_CDS: 0.32 Total: -42.00 kcal Atomic # 8 Polarization: -19.33 SS G_CDS: -0.29 Total: -19.62 kcal Atomic # 14 Polarization: 20.61 SS G_CDS: -5.02 Total: 15.59 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -34.75 -7.85 -42.60 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000043572772.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.310 kcal (2) G-P(sol) polarization free energy of solvation -34.749 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.059 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.847 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.596 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.906 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds