Wall clock time and date at job start Tue Mar 31 2020 10:36:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 O 1.42900 * 109.47415 * 2 1 4 4 C 1.42902 * 114.00140 * 180.02562 * 3 2 1 5 5 C 1.52995 * 109.46788 * 179.97438 * 4 3 2 6 6 C 1.53008 * 109.46929 * 179.97438 * 5 4 3 7 7 N 1.46497 * 109.46990 * 180.02562 * 6 5 4 8 8 C 1.34784 * 119.99660 * 180.02562 * 7 6 5 9 9 O 1.21589 * 120.00109 * 359.97438 * 8 7 6 10 10 N 1.34778 * 119.99796 * 180.02562 * 8 7 6 11 11 C 1.39939 * 119.99758 * 174.73723 * 10 8 7 12 12 C 1.38956 * 120.03570 * 326.32472 * 11 10 8 13 13 C 1.38156 * 120.07081 * 180.02562 * 12 11 10 14 14 C 1.38175 * 120.13567 * 359.72119 * 13 12 11 15 15 C 1.38905 * 120.06692 * 0.55652 * 14 13 12 16 16 O 1.35755 * 120.03289 * 179.72231 * 15 14 13 17 17 C 1.34825 * 117.00011 * 173.82163 * 16 15 14 18 18 H 1.07996 * 119.99945 * 354.59785 * 17 16 15 19 19 C 1.38654 * 119.99933 * 174.60004 * 17 16 15 20 20 N 1.31562 * 119.99967 * 359.97438 * 19 17 16 21 21 Si 1.86805 * 119.99998 * 179.97438 * 19 17 16 22 22 H 1.48499 * 109.47038 * 59.99674 * 21 19 17 23 23 H 1.48502 * 109.46895 * 180.02562 * 21 19 17 24 24 H 1.48497 * 109.46859 * 299.99756 * 21 19 17 25 25 C 1.38708 * 120.03895 * 146.35779 * 11 10 8 26 26 H 1.08995 * 109.47268 * 180.02562 * 1 2 3 27 27 H 1.09000 * 109.47247 * 300.00113 * 1 2 3 28 28 H 1.09005 * 109.47014 * 60.00154 * 1 2 3 29 29 H 1.09005 * 109.47079 * 239.99468 * 2 1 3 30 30 H 1.09005 * 109.47014 * 119.99846 * 2 1 3 31 31 H 1.09001 * 109.46974 * 59.99688 * 4 3 2 32 32 H 1.09001 * 109.46786 * 299.99500 * 4 3 2 33 33 H 1.08993 * 109.47791 * 59.99951 * 5 4 3 34 34 H 1.09001 * 109.47141 * 299.99396 * 5 4 3 35 35 H 1.09001 * 109.46888 * 59.99768 * 6 5 4 36 36 H 1.09001 * 109.46731 * 299.99666 * 6 5 4 37 37 H 0.96996 * 120.00079 * 359.97438 * 7 6 5 38 38 H 0.96996 * 119.99805 * 354.72075 * 10 8 7 39 39 H 1.08002 * 119.96782 * 0.02562 * 12 11 10 40 40 H 1.07998 * 119.93391 * 180.02562 * 13 12 11 41 41 H 1.08000 * 119.96247 * 180.28112 * 14 13 12 42 42 H 0.97000 * 120.00104 * 180.02562 * 20 19 17 43 43 H 1.08003 * 120.06084 * 359.97438 * 25 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.4309 1.4600 -0.0006 5 6 3.8254 2.9383 -0.0012 6 6 5.3507 3.0591 -0.0012 7 7 5.7284 4.4745 -0.0011 8 6 7.0300 4.8246 -0.0016 9 8 7.8906 3.9657 -0.0016 10 7 7.3775 6.1268 -0.0010 11 6 8.7240 6.4916 0.1096 12 6 9.5925 5.7220 0.8741 13 6 10.9218 6.0818 0.9843 14 6 11.3933 7.2040 0.3304 15 6 10.5289 7.9806 -0.4306 16 8 10.9916 9.0862 -1.0681 17 6 10.1338 9.7222 -1.8912 18 1 9.1595 9.2995 -2.0869 19 6 10.5027 10.9189 -2.4866 20 7 11.6895 11.4340 -2.2478 21 14 9.3145 11.7997 -3.6276 22 1 8.0728 12.1357 -2.8856 23 1 9.9441 13.0469 -4.1308 24 1 8.9823 10.9161 -4.7740 25 6 9.1930 7.6220 -0.5431 26 1 -0.3633 -1.0276 0.0005 27 1 -0.3634 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 1.8933 -0.5139 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 3.8333 0.9766 -0.8908 32 1 3.8340 0.9764 0.8892 33 1 3.4230 3.4221 0.8887 34 1 3.4223 3.4215 -0.8912 35 1 5.7534 2.5751 -0.8909 36 1 5.7533 2.5759 0.8891 37 1 5.0418 5.1597 -0.0015 38 1 6.6943 6.8111 -0.0776 39 1 9.2279 4.8418 1.3827 40 1 11.5950 5.4818 1.5786 41 1 12.4340 7.4801 0.4148 42 1 11.9474 12.2714 -2.6640 43 1 8.5199 8.2218 -1.1377 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000048488707.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:36:45 Heat of formation + Delta-G solvation = -81.789378 kcal Electronic energy + Delta-G solvation = -23848.851386 eV Core-core repulsion = 20088.040669 eV Total energy + Delta-G solvation = -3760.810717 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 308.157 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.36248 -38.82655 -38.51635 -36.71230 -35.49535 -34.19660 -32.70813 -32.19626 -30.89803 -29.23947 -28.40497 -25.68086 -25.20173 -23.23960 -22.35947 -21.83148 -21.75286 -20.35893 -18.55009 -17.85908 -17.43327 -17.05840 -16.88723 -15.89371 -15.76239 -15.13923 -15.02948 -14.78123 -14.48564 -14.37486 -14.04168 -13.94844 -13.54990 -13.38962 -13.04064 -12.94556 -12.37715 -12.15069 -12.10935 -12.07590 -11.71767 -11.56823 -11.44429 -11.33718 -11.10571 -11.00401 -10.72974 -10.44173 -10.06323 -10.03999 -9.61865 -9.46584 -9.20506 -8.78004 -7.67919 -7.11008 -6.42897 -4.02577 2.08602 2.42444 2.59030 3.12565 3.13674 3.16790 3.26655 3.32445 3.97318 4.21429 4.50368 4.59936 4.61006 4.63024 4.66605 4.84289 4.91955 5.02376 5.11729 5.12958 5.26588 5.30824 5.32678 5.44477 5.64189 5.68636 5.70232 5.76382 6.03601 6.11512 6.24899 6.28740 6.33650 6.57826 6.75453 6.81797 7.03483 7.13139 7.29625 7.36375 7.45754 7.85689 8.00839 8.03317 8.63412 9.02419 9.73448 10.75124 Molecular weight = 308.16amu Principal moments of inertia in cm(-1) A = 0.018730 B = 0.002188 C = 0.001977 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1494.608937 B =12794.003358 C =14161.827308 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.057 3.943 3 O -0.391 6.391 4 C 0.066 3.934 5 C -0.131 4.131 6 C 0.143 3.857 7 N -0.747 5.747 8 C 0.703 3.297 9 O -0.570 6.570 10 N -0.682 5.682 11 C 0.198 3.802 12 C -0.205 4.205 13 C -0.063 4.063 14 C -0.202 4.202 15 C 0.169 3.831 16 O -0.177 6.177 17 C -0.391 4.391 18 H 0.089 0.911 19 C 0.039 3.961 20 N -0.863 5.863 21 Si 0.940 3.060 22 H -0.271 1.271 23 H -0.278 1.278 24 H -0.271 1.271 25 C -0.258 4.258 26 H 0.071 0.929 27 H 0.063 0.937 28 H 0.063 0.937 29 H 0.049 0.951 30 H 0.049 0.951 31 H 0.054 0.946 32 H 0.053 0.947 33 H 0.078 0.922 34 H 0.079 0.921 35 H 0.069 0.931 36 H 0.069 0.931 37 H 0.397 0.603 38 H 0.403 0.597 39 H 0.119 0.881 40 H 0.116 0.884 41 H 0.118 0.882 42 H 0.270 0.730 43 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.401 -17.523 4.917 26.601 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.019 4.019 3 O -0.311 6.311 4 C -0.011 4.011 5 C -0.169 4.169 6 C 0.018 3.982 7 N -0.404 5.404 8 C 0.404 3.596 9 O -0.446 6.446 10 N -0.329 5.329 11 C 0.105 3.895 12 C -0.226 4.226 13 C -0.082 4.082 14 C -0.222 4.222 15 C 0.115 3.885 16 O -0.080 6.080 17 C -0.468 4.468 18 H 0.107 0.893 19 C -0.165 4.165 20 N -0.498 5.498 21 Si 0.765 3.235 22 H -0.196 1.196 23 H -0.203 1.203 24 H -0.196 1.196 25 C -0.280 4.280 26 H 0.089 0.911 27 H 0.082 0.918 28 H 0.082 0.918 29 H 0.067 0.933 30 H 0.067 0.933 31 H 0.072 0.928 32 H 0.072 0.928 33 H 0.097 0.903 34 H 0.097 0.903 35 H 0.087 0.913 36 H 0.087 0.913 37 H 0.231 0.769 38 H 0.237 0.763 39 H 0.137 0.863 40 H 0.134 0.866 41 H 0.136 0.864 42 H 0.080 0.920 43 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -18.413 -17.875 4.850 26.117 hybrid contribution -1.238 0.875 -0.692 1.666 sum -19.651 -17.000 4.158 26.314 Atomic orbital electron populations 1.21750 0.93674 1.02313 1.03199 1.22470 0.95647 0.83620 1.00208 1.87863 1.21029 1.26665 1.95498 1.22315 0.81354 0.96603 1.00804 1.21674 0.94779 0.96189 1.04216 1.20989 0.93231 0.81201 1.02780 1.45032 1.05823 1.08422 1.81130 1.15875 0.82798 0.83009 0.77960 1.90953 1.48486 1.48937 1.56266 1.42579 1.07794 1.05986 1.76492 1.17177 0.81679 0.94990 0.95684 1.20560 0.93923 1.02879 1.05220 1.20527 0.94672 0.95282 0.97714 1.20239 0.99486 0.97769 1.04695 1.19063 0.90856 0.87892 0.90715 1.84018 1.39130 1.33300 1.51591 1.21211 0.98288 1.04753 1.22536 0.89348 1.25267 0.97158 0.95882 0.98178 1.70028 1.18657 1.19307 1.41776 0.85806 0.79313 0.78741 0.79689 1.19600 1.20292 1.19578 1.20778 0.96742 1.01794 1.08643 0.91051 0.91823 0.91806 0.93297 0.93310 0.92820 0.92832 0.90300 0.90279 0.91306 0.91307 0.76922 0.76279 0.86258 0.86646 0.86411 0.92007 0.85311 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.78 10.28 37.16 0.38 -0.40 16 2 C 0.06 0.35 6.66 37.16 0.25 0.60 16 3 O -0.39 -3.31 10.34 -35.23 -0.36 -3.67 16 4 C 0.07 0.46 5.94 37.16 0.22 0.68 16 5 C -0.13 -0.89 5.70 -26.73 -0.15 -1.05 16 6 C 0.14 1.28 5.67 -4.04 -0.02 1.26 16 7 N -0.75 -7.78 5.56 -65.22 -0.36 -8.14 16 8 C 0.70 10.73 8.30 -86.91 -0.72 10.01 16 9 O -0.57 -10.96 14.05 5.29 0.07 -10.88 16 10 N -0.68 -10.46 5.35 -14.24 -0.08 -10.54 16 11 C 0.20 3.87 6.27 -83.72 -0.52 3.35 16 12 C -0.20 -4.03 8.65 -39.35 -0.34 -4.37 16 13 C -0.06 -1.21 10.03 -39.63 -0.40 -1.61 16 14 C -0.20 -4.40 9.99 -39.36 -0.39 -4.79 16 15 C 0.17 4.14 6.64 -39.14 -0.26 3.88 16 16 O -0.18 -5.06 9.76 0.05 0.00 -5.06 16 17 C -0.39 -10.90 9.44 30.89 0.29 -10.61 16 18 H 0.09 2.27 5.30 -52.49 -0.28 1.99 16 19 C 0.04 1.08 5.49 -17.51 -0.10 0.98 16 20 N -0.86 -25.26 13.67 55.48 0.76 -24.50 16 21 Si 0.94 20.38 29.55 -169.99 -5.02 15.36 16 22 H -0.27 -5.63 7.11 56.52 0.40 -5.23 16 23 H -0.28 -5.91 7.11 56.52 0.40 -5.51 16 24 H -0.27 -5.72 7.11 56.52 0.40 -5.32 16 25 C -0.26 -5.64 9.04 -39.21 -0.35 -5.99 16 26 H 0.07 0.25 8.14 -51.93 -0.42 -0.17 16 27 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 28 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 29 H 0.05 0.26 8.14 -51.93 -0.42 -0.16 16 30 H 0.05 0.26 8.14 -51.93 -0.42 -0.16 16 31 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 32 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 33 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 34 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 35 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 36 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 37 H 0.40 2.96 8.49 -40.82 -0.35 2.61 16 38 H 0.40 4.79 8.83 -40.82 -0.36 4.43 16 39 H 0.12 2.31 6.43 -52.49 -0.34 1.98 16 40 H 0.12 1.85 8.06 -52.49 -0.42 1.43 16 41 H 0.12 2.44 8.06 -52.49 -0.42 2.02 16 42 H 0.27 7.27 8.31 -40.82 -0.34 6.93 16 43 H 0.13 2.75 5.72 -52.48 -0.30 2.45 16 LS Contribution 366.47 15.07 5.52 5.52 Total: -1.00 -34.48 366.47 -7.85 -42.32 By element: Atomic # 1 Polarization: 13.91 SS G_CDS: -6.25 Total: 7.66 kcal Atomic # 6 Polarization: -5.94 SS G_CDS: -2.12 Total: -8.06 kcal Atomic # 7 Polarization: -43.50 SS G_CDS: 0.32 Total: -43.18 kcal Atomic # 8 Polarization: -19.33 SS G_CDS: -0.29 Total: -19.62 kcal Atomic # 14 Polarization: 20.38 SS G_CDS: -5.02 Total: 15.36 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -34.48 -7.85 -42.32 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000048488707.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.465 kcal (2) G-P(sol) polarization free energy of solvation -34.478 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.943 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.846 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.324 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.789 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds