Wall clock time and date at job start Tue Mar 31 2020 09:40:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42892 * 1 3 3 C 1.42909 * 113.99751 * 2 1 4 4 C 1.52998 * 109.46961 * 180.02562 * 3 2 1 5 5 H 1.09007 * 109.47217 * 304.99756 * 4 3 2 6 6 C 1.53002 * 109.47379 * 64.99932 * 4 3 2 7 7 C 1.53004 * 109.46950 * 185.00207 * 4 3 2 8 8 N 1.46497 * 109.47058 * 175.00219 * 7 4 3 9 9 C 1.34774 * 120.00141 * 179.97438 * 8 7 4 10 10 O 1.21587 * 119.99737 * 359.97438 * 9 8 7 11 11 N 1.34780 * 120.00348 * 179.97438 * 9 8 7 12 12 C 1.39940 * 119.99885 * 175.49540 * 11 9 8 13 13 C 1.38966 * 120.03356 * 214.85419 * 12 11 9 14 14 C 1.38152 * 120.06714 * 179.74630 * 13 12 11 15 15 C 1.38176 * 120.13826 * 0.55394 * 14 13 12 16 16 C 1.38910 * 120.06943 * 359.69709 * 15 14 13 17 17 O 1.35744 * 120.03475 * 180.02562 * 16 15 14 18 18 C 1.34836 * 117.00000 * 5.36426 * 17 16 15 19 19 H 1.08003 * 120.00031 * 354.97432 * 18 17 16 20 20 C 1.38647 * 120.00110 * 174.96297 * 18 17 16 21 21 N 1.31564 * 119.99988 * 0.02562 * 20 18 17 22 22 Si 1.86805 * 120.00286 * 180.02562 * 20 18 17 23 23 H 1.48501 * 109.46736 * 0.02562 * 22 20 18 24 24 H 1.48504 * 109.47030 * 119.99661 * 22 20 18 25 25 H 1.48493 * 109.47149 * 240.00370 * 22 20 18 26 26 C 1.38702 * 120.04062 * 35.12972 * 12 11 9 27 27 H 1.09003 * 109.47340 * 299.99925 * 1 2 3 28 28 H 1.09001 * 109.47461 * 60.00311 * 1 2 3 29 29 H 1.09000 * 109.46991 * 180.02562 * 1 2 3 30 30 H 1.08998 * 109.47180 * 60.00126 * 3 2 1 31 31 H 1.08996 * 109.47065 * 300.00153 * 3 2 1 32 32 H 1.08996 * 109.47304 * 300.00428 * 6 4 3 33 33 H 1.09003 * 109.46595 * 59.99738 * 6 4 3 34 34 H 1.09001 * 109.47211 * 179.97438 * 6 4 3 35 35 H 1.09007 * 109.46838 * 294.99544 * 7 4 3 36 36 H 1.08995 * 109.47113 * 55.00155 * 7 4 3 37 37 H 0.97006 * 119.99905 * 359.97438 * 8 7 4 38 38 H 0.96990 * 119.99844 * 355.49555 * 11 9 8 39 39 H 1.08001 * 119.96373 * 359.97438 * 13 12 11 40 40 H 1.08001 * 119.93459 * 180.27357 * 14 13 12 41 41 H 1.08004 * 119.96308 * 179.72349 * 15 14 13 42 42 H 0.97004 * 119.99964 * 180.02562 * 21 20 18 43 43 H 1.07999 * 120.06452 * 359.95434 * 26 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0101 1.3056 0.0000 4 6 3.5353 1.1848 -0.0006 5 1 3.8514 0.5683 0.8410 6 6 3.9952 0.5370 -1.3083 7 6 4.1572 2.5771 0.1251 8 7 5.6120 2.4531 0.2445 9 6 6.3747 3.5575 0.3671 10 8 5.8553 4.6568 0.3781 11 7 7.7131 3.4435 0.4775 12 6 8.5128 4.5914 0.5098 13 6 9.7715 4.5790 -0.0791 14 6 10.5595 5.7135 -0.0521 15 6 10.1038 6.8601 0.5699 16 6 8.8487 6.8772 1.1648 17 8 8.4015 8.0042 1.7753 18 6 9.1750 9.1039 1.6730 19 1 10.1411 9.0419 1.1942 20 6 8.7300 10.3143 2.1821 21 7 7.5532 10.3897 2.7655 22 14 9.8013 11.8380 2.0398 23 1 11.0674 11.4898 1.3462 24 1 9.0814 12.8783 1.2621 25 1 10.1065 12.3570 3.3972 26 6 8.0525 5.7410 1.1345 27 1 -0.3634 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 1.6885 1.8465 0.8900 31 1 1.6885 1.8464 -0.8899 32 1 3.5521 -0.4548 -1.3979 33 1 3.6791 1.1535 -2.1498 34 1 5.0818 0.4514 -1.3089 35 1 3.9141 3.1649 -0.7601 36 1 3.7609 3.0733 1.0110 37 1 6.0264 1.5761 0.2354 38 1 8.1220 2.5658 0.5345 39 1 10.1326 3.6827 -0.5614 40 1 11.5355 5.7028 -0.5143 41 1 10.7240 7.7440 0.5931 42 1 7.2418 11.2367 3.1214 43 1 7.0761 5.7520 1.5961 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000049177945.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:40:50 Heat of formation + Delta-G solvation = -75.520878 kcal Electronic energy + Delta-G solvation = -24403.871406 eV Core-core repulsion = 20643.332511 eV Total energy + Delta-G solvation = -3760.538895 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 308.157 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -40.33607 -38.87445 -38.45219 -36.80763 -35.87268 -34.02206 -32.85157 -32.18105 -29.39958 -28.44502 -27.70650 -26.78103 -25.33630 -25.01089 -22.33738 -21.37720 -20.87926 -20.48112 -18.32913 -18.17715 -17.14112 -16.85945 -16.40903 -15.84434 -15.56230 -15.38174 -14.99020 -14.59879 -14.55862 -14.39687 -14.07988 -13.80776 -13.47477 -13.27115 -12.97943 -12.84791 -12.57396 -12.42188 -11.94654 -11.70847 -11.53772 -11.40147 -11.35403 -11.15344 -11.06489 -10.98395 -10.73396 -10.39744 -10.04363 -9.92310 -9.64806 -9.19018 -9.08242 -8.76612 -7.60249 -7.11811 -6.36701 -3.95718 2.15122 2.41152 2.65132 3.16854 3.18463 3.24252 3.39596 3.42574 4.02058 4.26291 4.46429 4.53523 4.66233 4.66950 4.95297 4.96441 5.04910 5.17928 5.20431 5.26657 5.29679 5.37732 5.48363 5.57818 5.63408 5.68006 5.85516 5.89635 5.97166 6.15498 6.28896 6.36063 6.48031 6.59806 6.75926 6.89712 7.09124 7.13139 7.29432 7.41011 7.55750 7.88326 8.07726 8.09865 8.73395 9.08364 9.80823 10.81436 Molecular weight = 308.16amu Principal moments of inertia in cm(-1) A = 0.020077 B = 0.002458 C = 0.002216 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1394.272581 B =11389.560606 C =12633.326167 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.390 6.390 3 C 0.067 3.933 4 C -0.102 4.102 5 H 0.086 0.914 6 C -0.144 4.144 7 C 0.144 3.856 8 N -0.745 5.745 9 C 0.698 3.302 10 O -0.559 6.559 11 N -0.682 5.682 12 C 0.192 3.808 13 C -0.237 4.237 14 C -0.059 4.059 15 C -0.247 4.247 16 C 0.167 3.833 17 O -0.175 6.175 18 C -0.390 4.390 19 H 0.093 0.907 20 C 0.037 3.963 21 N -0.861 5.861 22 Si 0.941 3.059 23 H -0.267 1.267 24 H -0.276 1.276 25 H -0.277 1.277 26 C -0.186 4.186 27 H 0.042 0.958 28 H 0.041 0.959 29 H 0.085 0.915 30 H 0.055 0.945 31 H 0.055 0.945 32 H 0.064 0.936 33 H 0.056 0.944 34 H 0.055 0.945 35 H 0.070 0.930 36 H 0.070 0.930 37 H 0.394 0.606 38 H 0.401 0.599 39 H 0.107 0.893 40 H 0.111 0.889 41 H 0.127 0.873 42 H 0.269 0.731 43 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.970 -20.915 -6.327 22.935 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.309 6.309 3 C -0.010 4.010 4 C -0.121 4.121 5 H 0.104 0.896 6 C -0.202 4.202 7 C 0.020 3.980 8 N -0.402 5.402 9 C 0.398 3.602 10 O -0.434 6.434 11 N -0.329 5.329 12 C 0.098 3.902 13 C -0.258 4.258 14 C -0.078 4.078 15 C -0.267 4.267 16 C 0.112 3.888 17 O -0.078 6.078 18 C -0.467 4.467 19 H 0.110 0.890 20 C -0.167 4.167 21 N -0.496 5.496 22 Si 0.766 3.234 23 H -0.191 1.191 24 H -0.202 1.202 25 H -0.202 1.202 26 C -0.208 4.208 27 H 0.060 0.940 28 H 0.060 0.940 29 H 0.104 0.896 30 H 0.073 0.927 31 H 0.073 0.927 32 H 0.083 0.917 33 H 0.075 0.925 34 H 0.074 0.926 35 H 0.088 0.912 36 H 0.088 0.912 37 H 0.228 0.772 38 H 0.235 0.765 39 H 0.125 0.875 40 H 0.129 0.871 41 H 0.145 0.855 42 H 0.079 0.921 43 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -7.761 -19.834 -6.083 22.150 hybrid contribution 0.724 0.108 -0.107 0.740 sum -7.036 -19.726 -6.190 21.839 Atomic orbital electron populations 1.22744 0.80842 1.02752 1.00164 1.87841 1.19780 1.27833 1.95476 1.22446 0.92827 0.84772 1.00927 1.21316 0.93803 0.96594 1.00349 0.89571 1.21799 1.00977 1.01255 0.96140 1.21083 0.78620 0.95573 1.02739 1.45008 1.07005 1.07734 1.80468 1.15949 0.81323 0.84632 0.78267 1.91030 1.72063 1.24572 1.55728 1.42444 1.04799 1.08625 1.77025 1.16947 0.90244 0.85806 0.97156 1.20240 0.96024 0.99563 1.10009 1.20479 0.98009 0.92129 0.97159 1.21176 0.98038 0.99807 1.07663 1.19145 0.91377 0.88085 0.90172 1.83993 1.45997 1.15428 1.62350 1.21393 1.00444 0.84932 1.39887 0.88956 1.25305 0.96721 0.98297 0.96342 1.70073 1.17803 1.26424 1.35336 0.85643 0.79161 0.80274 0.78287 1.19102 1.20199 1.20221 1.20199 1.01901 0.91689 1.06970 0.93951 0.93988 0.89626 0.92696 0.92719 0.91678 0.92467 0.92571 0.91158 0.91182 0.77153 0.76465 0.87478 0.87090 0.85503 0.92143 0.84687 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.19 11.01 101.05 1.11 1.30 16 2 O -0.39 -3.39 10.24 -35.23 -0.36 -3.75 16 3 C 0.07 0.52 5.32 37.16 0.20 0.72 16 4 C -0.10 -0.78 2.66 -90.62 -0.24 -1.02 16 5 H 0.09 0.65 8.14 -51.93 -0.42 0.22 16 6 C -0.14 -1.04 8.96 37.16 0.33 -0.70 16 7 C 0.14 1.47 5.06 -4.04 -0.02 1.45 16 8 N -0.74 -8.12 5.29 -65.22 -0.34 -8.47 16 9 C 0.70 11.21 8.41 -86.92 -0.73 10.48 16 10 O -0.56 -12.01 13.78 5.29 0.07 -11.94 16 11 N -0.68 -10.12 5.34 -14.24 -0.08 -10.20 16 12 C 0.19 3.69 6.30 -83.71 -0.53 3.16 16 13 C -0.24 -4.14 9.96 -39.34 -0.39 -4.53 16 14 C -0.06 -1.10 10.03 -39.64 -0.40 -1.49 16 15 C -0.25 -5.56 9.17 -39.36 -0.36 -5.92 16 16 C 0.17 4.30 6.64 -39.13 -0.26 4.04 16 17 O -0.17 -5.26 9.76 0.05 0.00 -5.26 16 18 C -0.39 -11.30 9.49 30.88 0.29 -11.01 16 19 H 0.09 2.46 5.20 -52.48 -0.27 2.18 16 20 C 0.04 1.06 5.49 -17.52 -0.10 0.97 16 21 N -0.86 -26.21 13.67 55.48 0.76 -25.45 16 22 Si 0.94 21.10 29.55 -169.99 -5.02 16.07 16 23 H -0.27 -5.69 7.11 56.52 0.40 -5.29 16 24 H -0.28 -6.08 7.11 56.52 0.40 -5.68 16 25 H -0.28 -6.04 7.11 56.52 0.40 -5.64 16 26 C -0.19 -4.41 8.64 -39.21 -0.34 -4.75 16 27 H 0.04 0.23 8.14 -51.93 -0.42 -0.19 16 28 H 0.04 0.22 8.14 -51.93 -0.42 -0.20 16 29 H 0.09 0.41 8.14 -51.93 -0.42 -0.02 16 30 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 31 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 32 H 0.06 0.48 7.82 -51.93 -0.41 0.07 16 33 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 34 H 0.06 0.36 7.18 -51.93 -0.37 -0.01 16 35 H 0.07 0.79 8.14 -51.92 -0.42 0.36 16 36 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 37 H 0.39 2.97 7.67 -40.82 -0.31 2.66 16 38 H 0.40 4.15 8.84 -40.82 -0.36 3.79 16 39 H 0.11 1.50 8.06 -52.49 -0.42 1.07 16 40 H 0.11 1.69 8.06 -52.49 -0.42 1.27 16 41 H 0.13 2.83 5.63 -52.48 -0.30 2.53 16 42 H 0.27 7.45 8.31 -40.82 -0.34 7.11 16 43 H 0.14 3.47 6.22 -52.49 -0.33 3.14 16 LS Contribution 362.36 15.07 5.46 5.46 Total: -1.00 -36.04 362.36 -7.07 -43.12 By element: Atomic # 1 Polarization: 13.85 SS G_CDS: -6.13 Total: 7.72 kcal Atomic # 6 Polarization: -5.87 SS G_CDS: -1.43 Total: -7.30 kcal Atomic # 7 Polarization: -44.45 SS G_CDS: 0.34 Total: -44.12 kcal Atomic # 8 Polarization: -20.66 SS G_CDS: -0.29 Total: -20.95 kcal Atomic # 14 Polarization: 21.10 SS G_CDS: -5.02 Total: 16.07 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -36.04 -7.07 -43.12 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000049177945.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.403 kcal (2) G-P(sol) polarization free energy of solvation -36.044 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.447 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.074 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.118 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.521 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds