Wall clock time and date at job start Tue Mar 31 2020 09:40:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.42896 * 114.00075 * 2 1 4 4 C 1.53004 * 109.47012 * 179.97438 * 3 2 1 5 5 H 1.09001 * 109.46699 * 55.00832 * 4 3 2 6 6 C 1.52991 * 109.47464 * 295.00194 * 4 3 2 7 7 C 1.53000 * 109.47071 * 175.00160 * 4 3 2 8 8 N 1.46495 * 109.47390 * 185.00239 * 7 4 3 9 9 C 1.34772 * 120.00334 * 179.97438 * 8 7 4 10 10 O 1.21587 * 120.00193 * 0.02562 * 9 8 7 11 11 N 1.34782 * 120.00225 * 179.97438 * 9 8 7 12 12 C 1.39937 * 120.00134 * 175.49467 * 11 9 8 13 13 C 1.38959 * 120.03991 * 214.85594 * 12 11 9 14 14 C 1.38155 * 120.07308 * 179.74695 * 13 12 11 15 15 C 1.38173 * 120.13487 * 0.55270 * 14 13 12 16 16 C 1.38908 * 120.06626 * 359.69975 * 15 14 13 17 17 O 1.35757 * 120.03055 * 180.02562 * 16 15 14 18 18 C 1.34831 * 116.99897 * 5.36384 * 17 16 15 19 19 H 1.08004 * 120.00308 * 354.97125 * 18 17 16 20 20 C 1.38647 * 119.99895 * 174.96340 * 18 17 16 21 21 N 1.31560 * 120.00302 * 0.02562 * 20 18 17 22 22 Si 1.86801 * 120.00162 * 180.02562 * 20 18 17 23 23 H 1.48507 * 109.47195 * 90.00010 * 22 20 18 24 24 H 1.48499 * 109.47427 * 210.00180 * 22 20 18 25 25 H 1.48500 * 109.47283 * 330.00185 * 22 20 18 26 26 C 1.38706 * 120.03665 * 35.12919 * 12 11 9 27 27 H 1.09000 * 109.47313 * 299.99858 * 1 2 3 28 28 H 1.08998 * 109.47344 * 59.99395 * 1 2 3 29 29 H 1.09005 * 109.47401 * 179.97438 * 1 2 3 30 30 H 1.09002 * 109.47197 * 60.00354 * 3 2 1 31 31 H 1.08993 * 109.47448 * 300.00606 * 3 2 1 32 32 H 1.09002 * 109.46977 * 60.00082 * 6 4 3 33 33 H 1.09000 * 109.47209 * 179.97438 * 6 4 3 34 34 H 1.09001 * 109.47683 * 300.00036 * 6 4 3 35 35 H 1.09000 * 109.47122 * 305.00286 * 7 4 3 36 36 H 1.08997 * 109.47256 * 65.00115 * 7 4 3 37 37 H 0.96999 * 119.99879 * 0.02562 * 8 7 4 38 38 H 0.96996 * 119.99725 * 355.50112 * 11 9 8 39 39 H 1.08005 * 119.96279 * 359.97438 * 13 12 11 40 40 H 1.08004 * 119.93621 * 180.27722 * 14 13 12 41 41 H 1.08002 * 119.96417 * 179.72760 * 15 14 13 42 42 H 0.96998 * 120.00346 * 179.97438 * 21 20 18 43 43 H 1.08006 * 120.06619 * 359.95727 * 26 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5354 1.1846 0.0006 5 1 3.8514 0.5682 -0.8410 6 6 3.9952 0.5368 1.3082 7 6 4.1574 2.5768 -0.1250 8 7 5.6122 2.4528 -0.2446 9 6 6.3748 3.5571 -0.3681 10 8 5.8554 4.6564 -0.3799 11 7 7.7133 3.4430 -0.4775 12 6 8.4967 4.5810 -0.7003 13 6 9.6359 4.4973 -1.4916 14 6 10.4069 5.6215 -1.7162 15 6 10.0544 6.8297 -1.1459 16 6 8.9197 6.9187 -0.3496 17 8 8.5737 8.1062 0.2099 18 6 9.3086 9.1827 -0.1353 19 1 10.1790 9.0635 -0.7635 20 6 8.9468 10.4427 0.3161 21 7 7.8868 10.5880 1.0817 22 14 9.9644 11.9342 -0.1627 23 1 9.4371 12.5081 -1.4269 24 1 9.8858 12.9536 0.9143 25 1 11.3792 11.5268 -0.3563 26 6 8.1400 5.7926 -0.1268 27 1 -0.3634 0.5138 0.8900 28 1 -0.3634 0.5139 -0.8899 29 1 -0.3634 -1.0277 -0.0005 30 1 1.6886 1.8463 0.8900 31 1 1.6885 1.8464 -0.8899 32 1 3.5521 -0.4551 1.3977 33 1 5.0818 0.4503 1.3084 34 1 3.6793 1.1531 2.1499 35 1 3.7611 3.0731 -1.0108 36 1 3.9144 3.1646 0.7601 37 1 6.0266 1.5758 -0.2355 38 1 8.1336 2.5721 -0.4020 39 1 9.9169 3.5532 -1.9344 40 1 11.2894 5.5550 -2.3352 41 1 10.6615 7.7058 -1.3197 42 1 7.6338 11.4694 1.3978 43 1 7.2570 5.8594 0.4917 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000049177946.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:40:54 Heat of formation + Delta-G solvation = -75.444459 kcal Electronic energy + Delta-G solvation = -24406.203397 eV Core-core repulsion = 20645.667816 eV Total energy + Delta-G solvation = -3760.535581 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 308.157 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -40.33579 -38.87428 -38.45268 -36.80686 -35.87204 -34.02158 -32.85074 -32.18052 -29.39850 -28.44496 -27.70481 -26.77882 -25.33501 -25.01030 -22.33585 -21.37689 -20.87513 -20.48509 -18.32430 -18.17844 -17.12438 -16.87811 -16.40103 -15.84309 -15.57769 -15.37202 -14.98878 -14.65515 -14.58401 -14.27404 -14.11295 -13.78431 -13.49029 -13.31558 -12.98384 -12.75291 -12.62731 -12.41339 -11.95215 -11.70265 -11.52457 -11.39742 -11.35533 -11.16638 -11.06062 -10.96619 -10.73132 -10.41925 -10.04522 -9.92051 -9.65124 -9.19311 -9.08125 -8.75982 -7.60200 -7.11782 -6.36418 -3.95510 2.15135 2.41265 2.65234 3.17485 3.18642 3.23314 3.39475 3.42571 4.02263 4.26330 4.46664 4.53624 4.66479 4.66954 4.95301 4.96174 5.04954 5.18001 5.20202 5.26843 5.29505 5.38159 5.49393 5.58256 5.63428 5.68072 5.86020 5.89764 5.98269 6.15444 6.28961 6.36114 6.48056 6.59853 6.75829 6.89785 7.09132 7.13002 7.29482 7.40907 7.55815 7.88399 8.07798 8.09924 8.73427 9.08492 9.80894 10.81645 Molecular weight = 308.16amu Principal moments of inertia in cm(-1) A = 0.020126 B = 0.002448 C = 0.002229 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1390.919967 B =11437.317442 C =12558.258712 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.390 6.390 3 C 0.067 3.933 4 C -0.101 4.101 5 H 0.085 0.915 6 C -0.145 4.145 7 C 0.144 3.856 8 N -0.745 5.745 9 C 0.698 3.302 10 O -0.559 6.559 11 N -0.682 5.682 12 C 0.192 3.808 13 C -0.237 4.237 14 C -0.059 4.059 15 C -0.247 4.247 16 C 0.167 3.833 17 O -0.174 6.174 18 C -0.391 4.391 19 H 0.092 0.908 20 C 0.038 3.962 21 N -0.862 5.862 22 Si 0.941 3.059 23 H -0.274 1.274 24 H -0.278 1.278 25 H -0.268 1.268 26 C -0.186 4.186 27 H 0.042 0.958 28 H 0.042 0.958 29 H 0.085 0.915 30 H 0.055 0.945 31 H 0.054 0.946 32 H 0.064 0.936 33 H 0.055 0.945 34 H 0.057 0.943 35 H 0.069 0.931 36 H 0.071 0.929 37 H 0.394 0.606 38 H 0.401 0.599 39 H 0.107 0.893 40 H 0.111 0.889 41 H 0.127 0.873 42 H 0.269 0.731 43 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.739 -21.353 -2.456 22.844 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.309 6.309 3 C -0.010 4.010 4 C -0.120 4.120 5 H 0.104 0.896 6 C -0.202 4.202 7 C 0.020 3.980 8 N -0.402 5.402 9 C 0.398 3.602 10 O -0.434 6.434 11 N -0.329 5.329 12 C 0.098 3.902 13 C -0.258 4.258 14 C -0.078 4.078 15 C -0.267 4.267 16 C 0.112 3.888 17 O -0.077 6.077 18 C -0.467 4.467 19 H 0.110 0.890 20 C -0.166 4.166 21 N -0.496 5.496 22 Si 0.766 3.234 23 H -0.199 1.199 24 H -0.203 1.203 25 H -0.192 1.192 26 C -0.208 4.208 27 H 0.060 0.940 28 H 0.060 0.940 29 H 0.104 0.896 30 H 0.073 0.927 31 H 0.072 0.928 32 H 0.083 0.917 33 H 0.074 0.926 34 H 0.076 0.924 35 H 0.087 0.913 36 H 0.089 0.911 37 H 0.228 0.772 38 H 0.235 0.765 39 H 0.125 0.875 40 H 0.129 0.871 41 H 0.145 0.855 42 H 0.079 0.921 43 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -8.486 -20.243 -2.176 22.058 hybrid contribution 0.694 0.085 -0.300 0.760 sum -7.792 -20.158 -2.476 21.753 Atomic orbital electron populations 1.22745 0.80844 1.02750 1.00162 1.87839 1.19777 1.27837 1.95474 1.22446 0.92834 0.84770 1.00922 1.21311 0.93792 0.96580 1.00351 0.89617 1.21801 1.00993 1.01267 0.96151 1.21082 0.78616 0.95585 1.02736 1.45005 1.06997 1.07722 1.80487 1.15950 0.81295 0.84636 0.78290 1.91030 1.72243 1.24509 1.55611 1.42445 1.04825 1.09777 1.75846 1.16946 0.91333 0.85518 0.96360 1.20240 0.99624 0.98959 1.07022 1.20479 0.97807 0.91948 0.97543 1.21173 1.00749 0.98766 1.05995 1.19147 0.91640 0.87439 0.90570 1.83995 1.52775 1.12481 1.58490 1.21341 1.09116 0.83524 1.32717 0.89017 1.25300 0.96874 0.98073 0.96390 1.70058 1.23845 1.24065 1.31677 0.85711 0.79334 0.79984 0.78355 1.19921 1.20336 1.19216 1.20200 1.03024 0.90482 1.07051 0.93962 0.93982 0.89625 0.92674 0.92751 0.91683 0.92561 0.92394 0.91268 0.91077 0.77154 0.76466 0.87480 0.87089 0.85507 0.92090 0.84681 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.19 11.01 101.05 1.11 1.30 16 2 O -0.39 -3.38 10.24 -35.23 -0.36 -3.74 16 3 C 0.07 0.52 5.32 37.16 0.20 0.72 16 4 C -0.10 -0.78 2.66 -90.62 -0.24 -1.02 16 5 H 0.09 0.64 8.14 -51.93 -0.42 0.21 16 6 C -0.14 -1.06 8.96 37.15 0.33 -0.73 16 7 C 0.14 1.47 5.06 -4.04 -0.02 1.45 16 8 N -0.74 -8.13 5.29 -65.23 -0.34 -8.47 16 9 C 0.70 11.21 8.41 -86.92 -0.73 10.48 16 10 O -0.56 -12.02 13.78 5.29 0.07 -11.94 16 11 N -0.68 -10.13 5.34 -14.24 -0.08 -10.20 16 12 C 0.19 3.69 6.30 -83.72 -0.53 3.16 16 13 C -0.24 -4.14 9.96 -39.34 -0.39 -4.53 16 14 C -0.06 -1.10 10.03 -39.64 -0.40 -1.49 16 15 C -0.25 -5.55 9.17 -39.36 -0.36 -5.91 16 16 C 0.17 4.30 6.64 -39.14 -0.26 4.04 16 17 O -0.17 -5.26 9.76 0.02 0.00 -5.25 16 18 C -0.39 -11.31 9.49 30.88 0.29 -11.02 16 19 H 0.09 2.44 5.20 -52.48 -0.27 2.16 16 20 C 0.04 1.07 5.49 -17.52 -0.10 0.98 16 21 N -0.86 -26.21 13.67 55.48 0.76 -25.45 16 22 Si 0.94 21.09 29.55 -169.99 -5.02 16.06 16 23 H -0.27 -5.99 7.11 56.52 0.40 -5.59 16 24 H -0.28 -6.08 7.11 56.52 0.40 -5.68 16 25 H -0.27 -5.72 7.11 56.52 0.40 -5.32 16 26 C -0.19 -4.41 8.64 -39.21 -0.34 -4.75 16 27 H 0.04 0.22 8.14 -51.93 -0.42 -0.20 16 28 H 0.04 0.22 8.14 -51.93 -0.42 -0.20 16 29 H 0.09 0.40 8.14 -51.93 -0.42 -0.02 16 30 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 31 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 32 H 0.06 0.49 7.82 -51.93 -0.41 0.08 16 33 H 0.06 0.37 7.18 -51.93 -0.37 0.00 16 34 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 35 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 36 H 0.07 0.81 8.14 -51.93 -0.42 0.38 16 37 H 0.39 2.97 7.67 -40.82 -0.31 2.66 16 38 H 0.40 4.15 8.84 -40.82 -0.36 3.79 16 39 H 0.11 1.50 8.06 -52.48 -0.42 1.07 16 40 H 0.11 1.69 8.06 -52.48 -0.42 1.27 16 41 H 0.13 2.82 5.63 -52.49 -0.30 2.53 16 42 H 0.27 7.49 8.31 -40.82 -0.34 7.15 16 43 H 0.14 3.47 6.22 -52.48 -0.33 3.14 16 LS Contribution 362.36 15.07 5.46 5.46 Total: -1.00 -36.03 362.36 -7.07 -43.10 By element: Atomic # 1 Polarization: 13.90 SS G_CDS: -6.13 Total: 7.77 kcal Atomic # 6 Polarization: -5.90 SS G_CDS: -1.43 Total: -7.33 kcal Atomic # 7 Polarization: -44.46 SS G_CDS: 0.34 Total: -44.13 kcal Atomic # 8 Polarization: -20.65 SS G_CDS: -0.29 Total: -20.94 kcal Atomic # 14 Polarization: 21.09 SS G_CDS: -5.02 Total: 16.06 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -36.03 -7.07 -43.10 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000049177946.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.344 kcal (2) G-P(sol) polarization free energy of solvation -36.026 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.370 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.075 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.101 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.444 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds