Wall clock time and date at job start Tue Mar 31 2020 10:43:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 O 1.45197 * 109.47479 * 2 1 4 4 C 1.34766 * 116.99842 * 180.02562 * 3 2 1 5 5 O 1.21524 * 120.00308 * 359.97438 * 4 3 2 6 6 C 1.47247 * 119.99682 * 179.97438 * 4 3 2 7 7 C 1.38288 * 126.47127 * 89.99668 * 6 4 3 8 8 C 1.50699 * 125.81215 * 359.97438 * 7 6 4 9 9 N 1.34224 * 108.38548 * 180.02562 * 7 6 4 10 10 H 0.97005 * 125.38565 * 180.02562 * 9 7 6 11 11 C 1.37793 * 109.23850 * 0.02562 * 9 7 6 12 12 C 1.46817 * 125.84531 * 179.97438 * 11 9 7 13 13 O 1.21676 * 120.00461 * 180.02562 * 12 11 9 14 14 N 1.34780 * 119.99759 * 0.02765 * 12 11 9 15 15 C 1.46495 * 119.99860 * 179.97438 * 14 12 11 16 16 H 1.09001 * 109.47423 * 324.99605 * 15 14 12 17 17 C 1.53002 * 109.47111 * 85.00029 * 15 14 12 18 18 C 1.50701 * 109.47263 * 204.99849 * 15 14 12 19 19 H 1.08001 * 119.99976 * 0.02562 * 18 15 14 20 20 C 1.37875 * 120.00312 * 179.97438 * 18 15 14 21 21 N 1.31509 * 119.99984 * 0.02562 * 20 18 15 22 22 Si 1.86800 * 120.00010 * 179.97438 * 20 18 15 23 23 H 1.48501 * 109.47129 * 90.00162 * 22 20 18 24 24 H 1.48505 * 109.47158 * 210.00061 * 22 20 18 25 25 H 1.48497 * 109.47118 * 330.00142 * 22 20 18 26 26 C 1.36325 * 108.31785 * 0.02562 * 11 9 7 27 27 C 1.50702 * 126.49799 * 179.73838 * 26 11 9 28 28 H 1.09001 * 109.47643 * 180.02562 * 1 2 3 29 29 H 1.09007 * 109.46825 * 300.00096 * 1 2 3 30 30 H 1.08996 * 109.47110 * 59.99789 * 1 2 3 31 31 H 1.09000 * 109.46886 * 239.99495 * 2 1 3 32 32 H 1.09005 * 109.46884 * 120.00092 * 2 1 3 33 33 H 1.08998 * 109.46647 * 269.99863 * 8 7 6 34 34 H 1.09002 * 109.46731 * 29.99011 * 8 7 6 35 35 H 1.08994 * 109.47591 * 149.99609 * 8 7 6 36 36 H 0.96999 * 119.99873 * 0.02562 * 14 12 11 37 37 H 1.08992 * 109.47212 * 60.00346 * 17 15 14 38 38 H 1.09006 * 109.46786 * 179.97438 * 17 15 14 39 39 H 1.08999 * 109.46701 * 299.99560 * 17 15 14 40 40 H 0.97006 * 120.00303 * 179.97438 * 21 20 18 41 41 H 1.08995 * 109.47342 * 90.02453 * 27 26 11 42 42 H 1.09006 * 109.46669 * 210.02561 * 27 26 11 43 43 H 1.08997 * 109.46989 * 330.01967 * 27 26 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3689 0.0000 4 6 3.3501 1.5454 -0.0005 5 8 4.0903 0.5816 -0.0005 6 6 3.9129 2.9060 -0.0011 7 6 4.2275 3.6659 1.1106 8 6 4.0522 3.2428 2.5463 9 7 4.7146 4.8451 0.6934 10 1 5.0129 5.5655 1.2704 11 6 4.7239 4.8706 -0.6843 12 6 5.1838 5.9863 -1.5204 13 8 5.1442 5.8945 -2.7331 14 7 5.6498 7.1124 -0.9447 15 6 6.1092 8.2255 -1.7790 16 1 6.5843 7.8336 -2.6784 17 6 4.9137 9.0959 -2.1716 18 6 7.1027 9.0551 -1.0071 19 1 7.3658 8.7805 0.0037 20 6 7.6764 10.1642 -1.5917 21 7 7.3564 10.4984 -2.8227 22 14 8.9073 11.1930 -0.6345 23 1 10.2773 10.6693 -0.8673 24 1 8.8329 12.6045 -1.0900 25 1 8.5902 11.1230 0.8145 26 6 4.2319 3.6830 -1.1382 27 6 4.0566 3.2773 -2.5789 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5138 -0.8899 31 1 1.8933 -0.5139 -0.8900 32 1 1.8933 -0.5139 0.8900 33 1 3.0604 3.5341 2.8922 34 1 4.1601 2.1608 2.6219 35 1 4.8089 3.7275 3.1630 36 1 5.6817 7.1854 0.0220 37 1 4.4388 9.4879 -1.2723 38 1 5.2557 9.9244 -2.7920 39 1 4.1953 8.4958 -2.7299 40 1 7.7598 11.2790 -3.2338 41 1 4.9642 2.7875 -2.9315 42 1 3.2160 2.5884 -2.6627 43 1 3.8626 4.1625 -3.1846 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000064333187.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:43:06 Heat of formation + Delta-G solvation = -97.149892 kcal Electronic energy + Delta-G solvation = -25287.586291 eV Core-core repulsion = 21526.109492 eV Total energy + Delta-G solvation = -3761.476799 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 308.157 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.70229 -40.07387 -38.47649 -36.55245 -34.98371 -33.07825 -32.52037 -32.10187 -31.43752 -29.09294 -28.13417 -26.23954 -25.31273 -24.45261 -22.65214 -21.75616 -20.31277 -19.73261 -19.26368 -18.35767 -17.43207 -16.68392 -16.24875 -15.93726 -15.32172 -15.19782 -14.99234 -14.42015 -14.02182 -13.89773 -13.58807 -13.35642 -13.16360 -13.02847 -12.96253 -12.88227 -12.47417 -12.30522 -12.20084 -12.06911 -11.81580 -11.74974 -11.48144 -11.14515 -11.03619 -10.80737 -10.68508 -10.67288 -10.37612 -10.29855 -9.25451 -9.12774 -8.87879 -8.62335 -8.23554 -7.90587 -6.18458 -4.28469 1.59126 2.08618 2.12020 2.71952 3.08598 3.20216 3.26964 3.28090 3.85984 3.95956 4.31626 4.52135 4.67940 4.70441 4.79167 4.86378 5.01861 5.14002 5.18946 5.22813 5.26809 5.45065 5.51358 5.57238 5.59673 5.71594 5.78090 5.99742 6.12011 6.27489 6.40994 6.58311 6.74792 6.84726 6.89997 7.07670 7.23864 7.33695 7.48774 7.61919 7.72077 7.84161 8.07722 8.52104 8.69120 8.95806 9.38941 10.87469 Molecular weight = 308.16amu Principal moments of inertia in cm(-1) A = 0.027415 B = 0.002879 C = 0.002737 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1021.088946 B = 9724.464038 C =10229.443995 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.059 3.941 3 O -0.351 6.351 4 C 0.555 3.445 5 O -0.503 6.503 6 C -0.217 4.217 7 C 0.099 3.901 8 C -0.095 4.095 9 N -0.520 5.520 10 H 0.423 0.577 11 C -0.037 4.037 12 C 0.574 3.426 13 O -0.534 6.534 14 N -0.707 5.707 15 C 0.266 3.734 16 H 0.052 0.948 17 C -0.147 4.147 18 C -0.537 4.537 19 H 0.060 0.940 20 C 0.067 3.933 21 N -0.881 5.881 22 Si 0.902 3.098 23 H -0.279 1.279 24 H -0.284 1.284 25 H -0.274 1.274 26 C -0.039 4.039 27 C -0.093 4.093 28 H 0.078 0.922 29 H 0.066 0.934 30 H 0.068 0.932 31 H 0.070 0.930 32 H 0.069 0.931 33 H 0.084 0.916 34 H 0.082 0.918 35 H 0.077 0.923 36 H 0.382 0.618 37 H 0.026 0.974 38 H 0.091 0.909 39 H 0.017 0.983 40 H 0.265 0.735 41 H 0.071 0.929 42 H 0.056 0.944 43 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.483 -16.066 10.240 22.245 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.015 4.015 3 O -0.267 6.267 4 C 0.397 3.603 5 O -0.390 6.390 6 C -0.225 4.225 7 C -0.023 4.023 8 C -0.152 4.152 9 N -0.115 5.115 10 H 0.261 0.739 11 C -0.148 4.148 12 C 0.359 3.641 13 O -0.411 6.411 14 N -0.354 5.354 15 C 0.165 3.835 16 H 0.070 0.930 17 C -0.206 4.206 18 C -0.575 4.575 19 H 0.078 0.922 20 C -0.136 4.136 21 N -0.518 5.518 22 Si 0.730 3.270 23 H -0.205 1.205 24 H -0.210 1.210 25 H -0.199 1.199 26 C -0.046 4.046 27 C -0.150 4.150 28 H 0.097 0.903 29 H 0.085 0.915 30 H 0.087 0.913 31 H 0.088 0.912 32 H 0.087 0.913 33 H 0.102 0.898 34 H 0.101 0.899 35 H 0.095 0.905 36 H 0.213 0.787 37 H 0.045 0.955 38 H 0.110 0.890 39 H 0.036 0.964 40 H 0.075 0.925 41 H 0.090 0.910 42 H 0.075 0.925 43 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -11.189 -16.091 9.228 21.662 hybrid contribution 0.891 0.824 1.346 1.812 sum -10.298 -15.267 10.573 21.235 Atomic orbital electron populations 1.21803 0.92633 1.02835 1.03669 1.23037 0.95402 0.80516 1.02568 1.86707 1.24290 1.31850 1.83896 1.20277 0.80120 0.88727 0.71152 1.90836 1.60613 1.42505 1.45047 1.18182 1.16152 0.94447 0.93727 1.20406 1.00628 0.85923 0.95315 1.20512 1.03340 1.02847 0.88541 1.41586 1.48769 1.14230 1.06954 0.73862 1.20310 1.14205 0.98880 0.81426 1.17023 0.78626 0.81243 0.87179 1.90775 1.56217 1.81266 1.12869 1.46475 1.62717 1.16243 1.09966 1.18797 0.91994 0.81632 0.91120 0.93012 1.22087 0.97192 1.01524 0.99814 1.21172 1.24807 1.11040 1.00494 0.92197 1.24880 0.96629 0.97121 0.94997 1.69894 1.42568 1.26634 1.12731 0.86437 0.81310 0.79389 0.79878 1.20507 1.20995 1.19917 1.19456 0.99159 0.90942 0.95046 1.20417 1.01351 1.02699 0.90518 0.90323 0.91492 0.91338 0.91191 0.91307 0.89751 0.89907 0.90452 0.78685 0.95498 0.88999 0.96433 0.92461 0.91036 0.92530 0.88918 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.98 10.29 37.16 0.38 -0.60 16 2 C 0.06 0.54 6.20 37.16 0.23 0.77 16 3 O -0.35 -4.36 10.23 -40.67 -0.42 -4.78 16 4 C 0.55 7.97 7.13 34.39 0.25 8.21 16 5 O -0.50 -8.20 16.90 -19.28 -0.33 -8.52 16 6 C -0.22 -3.20 6.01 -105.03 -0.63 -3.83 16 7 C 0.10 1.21 7.21 -81.53 -0.59 0.62 16 8 C -0.09 -0.76 10.24 36.01 0.37 -0.39 16 9 N -0.52 -6.54 5.91 -5.61 -0.03 -6.57 16 10 H 0.42 4.07 8.13 -40.82 -0.33 3.74 16 11 C -0.04 -0.61 6.99 -82.41 -0.58 -1.18 16 12 C 0.57 11.61 7.76 -12.79 -0.10 11.51 16 13 O -0.53 -12.53 14.36 5.21 0.07 -12.46 16 14 N -0.71 -14.32 5.07 -56.20 -0.28 -14.60 16 15 C 0.27 6.60 2.56 -69.08 -0.18 6.43 16 16 H 0.05 1.49 7.58 -51.93 -0.39 1.09 16 17 C -0.15 -3.59 9.26 37.16 0.34 -3.25 16 18 C -0.54 -13.86 8.73 -34.44 -0.30 -14.16 16 19 H 0.06 1.47 7.74 -52.49 -0.41 1.06 16 20 C 0.07 1.78 5.30 -17.82 -0.09 1.68 16 21 N -0.88 -24.39 11.32 55.43 0.63 -23.76 16 22 Si 0.90 20.24 29.54 -169.99 -5.02 15.22 16 23 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 24 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 25 H -0.27 -5.99 7.11 56.52 0.40 -5.59 16 26 C -0.04 -0.64 6.21 -104.12 -0.65 -1.29 16 27 C -0.09 -1.46 9.63 36.01 0.35 -1.11 16 28 H 0.08 0.35 8.14 -51.93 -0.42 -0.07 16 29 H 0.07 0.41 8.14 -51.92 -0.42 -0.01 16 30 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 31 H 0.07 0.64 8.14 -51.93 -0.42 0.21 16 32 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 33 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 34 H 0.08 0.68 7.93 -51.93 -0.41 0.27 16 35 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 36 H 0.38 6.47 7.62 -40.82 -0.31 6.16 16 37 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 38 H 0.09 2.43 6.07 -51.93 -0.32 2.12 16 39 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 40 H 0.27 6.97 8.31 -40.82 -0.34 6.63 16 41 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 42 H 0.06 0.78 8.05 -51.93 -0.42 0.36 16 43 H 0.09 1.59 6.42 -51.93 -0.33 1.26 16 LS Contribution 367.40 15.07 5.54 5.54 Total: -1.00 -32.60 367.40 -7.32 -39.92 By element: Atomic # 1 Polarization: 12.89 SS G_CDS: -6.28 Total: 6.61 kcal Atomic # 6 Polarization: 4.60 SS G_CDS: -1.19 Total: 3.41 kcal Atomic # 7 Polarization: -45.24 SS G_CDS: 0.31 Total: -44.93 kcal Atomic # 8 Polarization: -25.09 SS G_CDS: -0.67 Total: -25.76 kcal Atomic # 14 Polarization: 20.24 SS G_CDS: -5.02 Total: 15.22 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -32.60 -7.32 -39.92 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000064333187.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.227 kcal (2) G-P(sol) polarization free energy of solvation -32.603 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.831 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.319 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.922 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.150 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds