Wall clock time and date at job start Tue Mar 31 2020 09:28:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53008 * 109.47140 * 2 1 4 4 C 1.53005 * 109.47141 * 240.00332 * 2 1 3 5 5 H 1.09000 * 109.46501 * 305.19838 * 4 2 1 6 6 N 1.46498 * 109.47041 * 185.19705 * 4 2 1 7 7 C 1.34777 * 119.99919 * 85.00014 * 6 4 2 8 8 O 1.21697 * 120.00160 * 359.97438 * 7 6 4 9 9 C 1.46656 * 119.99846 * 179.97438 * 7 6 4 10 10 C 1.36541 * 125.98956 * 179.71647 * 9 7 6 11 11 C 1.40368 * 106.71069 * 179.85345 * 10 9 7 12 12 C 1.35134 * 107.11105 * 0.41092 * 11 10 9 13 13 O 1.33930 * 108.76786 * 359.74248 * 12 11 10 14 14 C 1.50700 * 109.47209 * 65.19198 * 4 2 1 15 15 O 1.21282 * 119.99579 * 93.69901 * 14 4 2 16 16 N 1.34771 * 120.00464 * 273.70206 * 14 4 2 17 17 C 1.46496 * 120.00142 * 175.27252 * 16 14 4 18 18 H 1.08998 * 109.47335 * 35.00332 * 17 16 14 19 19 C 1.52999 * 109.47194 * 274.99767 * 17 16 14 20 20 C 1.50700 * 109.47086 * 155.00102 * 17 16 14 21 21 H 1.07993 * 120.00180 * 359.97438 * 20 17 16 22 22 C 1.37882 * 120.00071 * 179.97438 * 20 17 16 23 23 N 1.31515 * 119.99603 * 0.02562 * 22 20 17 24 24 Si 1.86796 * 120.00174 * 179.97438 * 22 20 17 25 25 H 1.48495 * 109.47163 * 89.99973 * 24 22 20 26 26 H 1.48497 * 109.47242 * 210.00415 * 24 22 20 27 27 H 1.48506 * 109.47051 * 330.00067 * 24 22 20 28 28 H 1.09000 * 109.46901 * 292.96551 * 1 2 3 29 29 H 1.09000 * 109.46891 * 52.95922 * 1 2 3 30 30 H 1.08997 * 109.47125 * 172.96341 * 1 2 3 31 31 H 1.08995 * 109.47478 * 120.00416 * 2 1 3 32 32 H 1.08994 * 109.46391 * 60.00150 * 3 2 1 33 33 H 1.08999 * 109.47002 * 180.02562 * 3 2 1 34 34 H 1.09000 * 109.47001 * 300.00161 * 3 2 1 35 35 H 0.96997 * 119.99520 * 264.99501 * 6 4 2 36 36 H 1.08004 * 126.64384 * 359.96030 * 10 9 7 37 37 H 1.07996 * 126.44400 * 180.15394 * 11 10 9 38 38 H 1.08001 * 125.61058 * 179.70997 * 12 11 10 39 39 H 0.96999 * 119.99922 * 355.27701 * 16 14 4 40 40 H 1.08999 * 109.47255 * 60.00177 * 19 17 16 41 41 H 1.09005 * 109.47454 * 180.02562 * 19 17 16 42 42 H 1.08998 * 109.47440 * 300.00500 * 19 17 16 43 43 H 0.97008 * 119.99316 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0400 -0.7212 -1.2493 5 1 1.6026 -1.7184 -1.2971 6 7 3.4997 -0.8305 -1.1884 7 6 4.0716 -1.8530 -0.5222 8 8 3.3756 -2.6853 0.0290 9 6 5.5328 -1.9627 -0.4617 10 6 6.2382 -2.9398 0.1802 11 6 7.5978 -2.6561 -0.0234 12 6 7.6619 -1.5273 -0.7635 13 8 6.4157 -1.1125 -1.0256 14 6 1.6454 0.0596 -2.4764 15 8 2.4140 0.8669 -2.9545 16 7 0.4386 -0.1391 -3.0425 17 6 0.0134 0.6917 -4.1716 18 1 0.8768 0.9300 -4.7928 19 6 -0.6096 1.9865 -3.6459 20 6 -1.0041 -0.0583 -4.9921 21 1 -1.3037 -1.0544 -4.7017 22 6 -1.5525 0.5272 -6.1135 23 7 -1.1873 1.7401 -6.4673 24 14 -2.8132 -0.4027 -7.1309 25 1 -4.1758 -0.1121 -6.6170 26 1 -2.7174 0.0252 -8.5496 27 1 -2.5486 -1.8609 -7.0348 28 1 -0.3633 0.4010 0.9462 29 1 -0.3633 0.6191 -0.8203 30 1 -0.3633 -1.0199 -0.1259 31 1 1.8934 -0.5139 0.8899 32 1 1.6767 1.9563 0.8900 33 1 3.1300 1.4425 -0.0005 34 1 1.6767 1.9564 -0.8900 35 1 4.0544 -0.1670 -1.6276 36 1 5.8292 -3.7711 0.7354 37 1 8.4351 -3.2296 0.3458 38 1 8.5687 -1.0397 -1.0894 39 1 -0.1484 -0.8323 -2.7022 40 1 0.1263 2.5291 -3.0525 41 1 -0.9264 2.6046 -4.4861 42 1 -1.4730 1.7482 -3.0247 43 1 -1.5729 2.1518 -7.2565 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000064346297.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:28:53 Heat of formation + Delta-G solvation = -69.426240 kcal Electronic energy + Delta-G solvation = -25929.646658 eV Core-core repulsion = 22169.372046 eV Total energy + Delta-G solvation = -3760.274611 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 308.157 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -42.86708 -40.29845 -38.74306 -35.95452 -34.87012 -33.63494 -33.09537 -32.36726 -30.25524 -29.22383 -26.97308 -26.78567 -25.29788 -23.28593 -22.03166 -21.92526 -20.68955 -19.87192 -19.32992 -18.89597 -17.13921 -16.55577 -16.47634 -16.14570 -15.74547 -15.29611 -15.04065 -14.64427 -14.33198 -13.98376 -13.51432 -13.37989 -13.22532 -13.20681 -12.98086 -12.80577 -12.50964 -12.14146 -12.00292 -11.65461 -11.30046 -11.15332 -10.96927 -10.93300 -10.86422 -10.76554 -10.42016 -10.34487 -10.28993 -10.26007 -9.41944 -9.08972 -9.01611 -8.81552 -8.59194 -7.99425 -6.15795 -4.25036 0.88331 2.13366 2.47924 2.96244 3.06781 3.22821 3.28735 3.30180 3.32645 4.00377 4.34410 4.48453 4.66945 4.77625 4.90480 5.00913 5.12856 5.17143 5.38716 5.39725 5.51140 5.54871 5.67939 5.74736 5.79286 5.99140 6.03014 6.07935 6.14325 6.22793 6.40385 6.49312 6.61620 6.76746 6.89688 7.08324 7.34420 7.42012 7.49323 7.64533 7.85591 7.98587 8.09990 8.55549 8.71496 8.98253 9.42350 10.90100 Molecular weight = 308.16amu Principal moments of inertia in cm(-1) A = 0.019273 B = 0.003301 C = 0.003136 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1452.492020 B = 8481.352277 C = 8925.878061 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.095 4.095 3 C -0.149 4.149 4 C 0.127 3.873 5 H 0.106 0.894 6 N -0.696 5.696 7 C 0.604 3.396 8 O -0.523 6.523 9 C -0.074 4.074 10 C -0.123 4.123 11 C -0.228 4.228 12 C -0.006 4.006 13 O -0.160 6.160 14 C 0.505 3.495 15 O -0.549 6.549 16 N -0.699 5.699 17 C 0.264 3.736 18 H 0.050 0.950 19 C -0.146 4.146 20 C -0.535 4.535 21 H 0.062 0.938 22 C 0.067 3.933 23 N -0.883 5.883 24 Si 0.902 3.098 25 H -0.279 1.279 26 H -0.285 1.285 27 H -0.273 1.273 28 H 0.060 0.940 29 H 0.070 0.930 30 H 0.059 0.941 31 H 0.081 0.919 32 H 0.054 0.946 33 H 0.053 0.947 34 H 0.066 0.934 35 H 0.415 0.585 36 H 0.160 0.840 37 H 0.156 0.844 38 H 0.210 0.790 39 H 0.391 0.609 40 H 0.013 0.987 41 H 0.091 0.909 42 H 0.028 0.972 43 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.635 -5.198 13.872 19.470 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.115 4.115 3 C -0.206 4.206 4 C 0.019 3.981 5 H 0.124 0.876 6 N -0.348 5.348 7 C 0.390 3.610 8 O -0.402 6.402 9 C -0.126 4.126 10 C -0.143 4.143 11 C -0.247 4.247 12 C -0.076 4.076 13 O -0.055 6.055 14 C 0.289 3.711 15 O -0.428 6.428 16 N -0.347 5.347 17 C 0.163 3.837 18 H 0.068 0.932 19 C -0.205 4.205 20 C -0.573 4.573 21 H 0.080 0.920 22 C -0.136 4.136 23 N -0.521 5.521 24 Si 0.729 3.271 25 H -0.205 1.205 26 H -0.211 1.211 27 H -0.198 1.198 28 H 0.079 0.921 29 H 0.089 0.911 30 H 0.078 0.922 31 H 0.099 0.901 32 H 0.073 0.927 33 H 0.072 0.928 34 H 0.085 0.915 35 H 0.253 0.747 36 H 0.178 0.822 37 H 0.174 0.826 38 H 0.227 0.773 39 H 0.224 0.776 40 H 0.033 0.967 41 H 0.109 0.891 42 H 0.047 0.953 43 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 12.496 -4.761 13.546 19.034 hybrid contribution -0.478 -0.636 -0.542 0.963 sum 12.017 -5.397 13.004 18.511 Atomic orbital electron populations 1.21950 0.93798 1.02615 1.02967 1.21366 0.96733 0.96923 0.96479 1.21875 1.01054 0.95255 1.02444 1.21114 0.80734 1.01263 0.95038 0.87601 1.45666 1.07357 1.27917 1.53823 1.16520 0.83716 0.81595 0.79190 1.90876 1.61251 1.41452 1.46586 1.22078 0.90219 0.94924 1.05371 1.21968 0.92710 0.99458 1.00195 1.21861 0.97467 0.99882 1.05473 1.24444 0.85988 0.97007 1.00191 1.84116 1.15662 1.46002 1.59751 1.20149 0.83109 0.83625 0.84250 1.90656 1.51360 1.36862 1.63971 1.46559 1.16243 1.37260 1.34622 1.18788 0.95389 0.87477 0.82066 0.93181 1.22090 0.97891 0.99604 1.00915 1.21208 1.24158 1.01683 1.10257 0.92009 1.24879 0.96696 0.94969 0.97102 1.69900 1.42863 1.13645 1.25656 0.86443 0.81299 0.80009 0.79341 1.20518 1.21076 1.19815 0.92116 0.91105 0.92157 0.90057 0.92688 0.92758 0.91469 0.74693 0.82200 0.82610 0.77339 0.77610 0.96749 0.89060 0.95320 0.92553 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.98 8.54 37.16 0.32 -1.66 16 2 C -0.10 -1.29 2.87 -90.61 -0.26 -1.55 16 3 C -0.15 -2.07 8.63 37.16 0.32 -1.75 16 4 C 0.13 1.95 2.14 -69.08 -0.15 1.80 16 5 H 0.11 1.60 7.57 -51.93 -0.39 1.21 16 6 N -0.70 -10.31 4.51 -56.25 -0.25 -10.57 16 7 C 0.60 8.91 7.75 -12.86 -0.10 8.81 16 8 O -0.52 -8.73 16.53 5.19 0.09 -8.65 16 9 C -0.07 -0.95 7.13 -36.80 -0.26 -1.21 16 10 C -0.12 -1.34 10.62 -39.39 -0.42 -1.76 16 11 C -0.23 -1.92 10.88 -39.88 -0.43 -2.36 16 12 C -0.01 -0.05 12.08 29.63 0.36 0.31 16 13 O -0.16 -1.87 10.40 4.99 0.05 -1.81 16 14 C 0.51 9.56 5.27 -10.99 -0.06 9.50 16 15 O -0.55 -12.09 14.92 5.56 0.08 -12.01 16 16 N -0.70 -13.93 4.03 -54.94 -0.22 -14.15 16 17 C 0.26 6.48 2.60 -69.08 -0.18 6.30 16 18 H 0.05 1.43 7.51 -51.93 -0.39 1.04 16 19 C -0.15 -3.48 9.26 37.16 0.34 -3.14 16 20 C -0.53 -13.88 8.73 -34.44 -0.30 -14.18 16 21 H 0.06 1.54 7.74 -52.49 -0.41 1.13 16 22 C 0.07 1.77 5.30 -17.82 -0.09 1.68 16 23 N -0.88 -24.46 11.32 55.43 0.63 -23.83 16 24 Si 0.90 20.45 29.54 -169.99 -5.02 15.43 16 25 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 26 H -0.29 -6.49 7.11 56.52 0.40 -6.08 16 27 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 28 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 29 H 0.07 1.03 6.95 -51.93 -0.36 0.67 16 30 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 31 H 0.08 1.09 8.14 -51.93 -0.42 0.66 16 32 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 33 H 0.05 0.74 7.76 -51.93 -0.40 0.34 16 34 H 0.07 1.10 6.68 -51.93 -0.35 0.76 16 35 H 0.42 6.21 7.55 -40.82 -0.31 5.90 16 36 H 0.16 1.59 8.06 -52.48 -0.42 1.17 16 37 H 0.16 0.88 8.06 -52.49 -0.42 0.45 16 38 H 0.21 0.83 8.06 -52.49 -0.42 0.41 16 39 H 0.39 6.88 8.33 -40.82 -0.34 6.54 16 40 H 0.01 0.31 8.14 -51.93 -0.42 -0.11 16 41 H 0.09 2.39 6.07 -51.93 -0.32 2.08 16 42 H 0.03 0.63 8.14 -51.93 -0.42 0.21 16 43 H 0.26 6.97 8.31 -40.82 -0.34 6.63 16 LS Contribution 361.85 15.07 5.45 5.45 Total: -1.00 -30.84 361.85 -6.31 -37.16 By element: Atomic # 1 Polarization: 18.39 SS G_CDS: -6.20 Total: 12.19 kcal Atomic # 6 Polarization: 1.71 SS G_CDS: -0.91 Total: 0.79 kcal Atomic # 7 Polarization: -48.70 SS G_CDS: 0.15 Total: -48.55 kcal Atomic # 8 Polarization: -22.69 SS G_CDS: 0.22 Total: -22.47 kcal Atomic # 14 Polarization: 20.45 SS G_CDS: -5.02 Total: 15.43 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -30.84 -6.31 -37.16 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000064346297.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.270 kcal (2) G-P(sol) polarization free energy of solvation -30.843 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.113 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.313 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.156 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.426 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds