Wall clock time and date at job start Tue Mar 31 2020 09:28:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53008 * 109.47140 * 2 1 4 4 C 1.53005 * 109.47141 * 240.00332 * 2 1 3 5 5 H 1.09000 * 109.46501 * 305.19838 * 4 2 1 6 6 N 1.46498 * 109.47041 * 185.19705 * 4 2 1 7 7 C 1.34777 * 119.99919 * 85.00014 * 6 4 2 8 8 O 1.21697 * 120.00160 * 359.97438 * 7 6 4 9 9 C 1.46656 * 119.99846 * 179.97438 * 7 6 4 10 10 C 1.36541 * 125.98956 * 179.71647 * 9 7 6 11 11 C 1.40368 * 106.71069 * 179.85345 * 10 9 7 12 12 C 1.35134 * 107.11105 * 0.41092 * 11 10 9 13 13 O 1.33930 * 108.76786 * 359.74248 * 12 11 10 14 14 C 1.50700 * 109.47209 * 65.19198 * 4 2 1 15 15 O 1.21282 * 119.99579 * 93.69901 * 14 4 2 16 16 N 1.34771 * 120.00464 * 273.70206 * 14 4 2 17 17 C 1.46496 * 120.00142 * 175.27252 * 16 14 4 18 18 H 1.08998 * 109.47335 * 35.00332 * 17 16 14 19 19 C 1.52999 * 109.47194 * 274.99767 * 17 16 14 20 20 C 1.50700 * 109.47086 * 155.00102 * 17 16 14 21 21 H 1.07993 * 120.00180 * 359.97438 * 20 17 16 22 22 C 1.37882 * 120.00071 * 179.97438 * 20 17 16 23 23 N 1.31515 * 119.99603 * 0.02562 * 22 20 17 24 24 Si 1.86796 * 120.00174 * 179.97438 * 22 20 17 25 25 H 1.48495 * 109.47163 * 89.99973 * 24 22 20 26 26 H 1.48497 * 109.47242 * 210.00415 * 24 22 20 27 27 H 1.48506 * 109.47051 * 330.00067 * 24 22 20 28 28 H 1.09000 * 109.46901 * 292.96551 * 1 2 3 29 29 H 1.09000 * 109.46891 * 52.95922 * 1 2 3 30 30 H 1.08997 * 109.47125 * 172.96341 * 1 2 3 31 31 H 1.08995 * 109.47478 * 120.00416 * 2 1 3 32 32 H 1.08994 * 109.46391 * 60.00150 * 3 2 1 33 33 H 1.08999 * 109.47002 * 180.02562 * 3 2 1 34 34 H 1.09000 * 109.47001 * 300.00161 * 3 2 1 35 35 H 0.96997 * 119.99520 * 264.99501 * 6 4 2 36 36 H 1.08004 * 126.64384 * 359.96030 * 10 9 7 37 37 H 1.07996 * 126.44400 * 180.15394 * 11 10 9 38 38 H 1.08001 * 125.61058 * 179.70997 * 12 11 10 39 39 H 0.96999 * 119.99922 * 355.27701 * 16 14 4 40 40 H 1.08999 * 109.47255 * 60.00177 * 19 17 16 41 41 H 1.09005 * 109.47454 * 180.02562 * 19 17 16 42 42 H 1.08998 * 109.47440 * 300.00500 * 19 17 16 43 43 H 0.97008 * 119.99316 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0400 -0.7212 -1.2493 5 1 1.6026 -1.7184 -1.2971 6 7 3.4997 -0.8305 -1.1884 7 6 4.0716 -1.8530 -0.5222 8 8 3.3756 -2.6853 0.0290 9 6 5.5328 -1.9627 -0.4617 10 6 6.2382 -2.9398 0.1802 11 6 7.5978 -2.6561 -0.0234 12 6 7.6619 -1.5273 -0.7635 13 8 6.4157 -1.1125 -1.0256 14 6 1.6454 0.0596 -2.4764 15 8 2.4140 0.8669 -2.9545 16 7 0.4386 -0.1391 -3.0425 17 6 0.0134 0.6917 -4.1716 18 1 0.8768 0.9300 -4.7928 19 6 -0.6096 1.9865 -3.6459 20 6 -1.0041 -0.0583 -4.9921 21 1 -1.3037 -1.0544 -4.7017 22 6 -1.5525 0.5272 -6.1135 23 7 -1.1873 1.7401 -6.4673 24 14 -2.8132 -0.4027 -7.1309 25 1 -4.1758 -0.1121 -6.6170 26 1 -2.7174 0.0252 -8.5496 27 1 -2.5486 -1.8609 -7.0348 28 1 -0.3633 0.4010 0.9462 29 1 -0.3633 0.6191 -0.8203 30 1 -0.3633 -1.0199 -0.1259 31 1 1.8934 -0.5139 0.8899 32 1 1.6767 1.9563 0.8900 33 1 3.1300 1.4425 -0.0005 34 1 1.6767 1.9564 -0.8900 35 1 4.0544 -0.1670 -1.6276 36 1 5.8292 -3.7711 0.7354 37 1 8.4351 -3.2296 0.3458 38 1 8.5687 -1.0397 -1.0894 39 1 -0.1484 -0.8323 -2.7022 40 1 0.1263 2.5291 -3.0525 41 1 -0.9264 2.6046 -4.4861 42 1 -1.4730 1.7482 -3.0247 43 1 -1.5729 2.1518 -7.2565 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000064346297.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:28:53 Heat of formation + Delta-G solvation = -90.277640 kcal Electronic energy + Delta-G solvation = -25930.550842 eV Core-core repulsion = 22169.372046 eV Total energy + Delta-G solvation = -3761.178796 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 308.157 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -43.65970 -41.64549 -40.10702 -37.33122 -36.62313 -34.76392 -34.22734 -33.95251 -31.29299 -30.87345 -28.14555 -27.97300 -27.33116 -24.34532 -23.50853 -22.70274 -21.98927 -21.27828 -20.72577 -19.97405 -18.65195 -17.69480 -17.61771 -17.38671 -17.12309 -16.83899 -16.57847 -15.90938 -15.69203 -15.18351 -14.93241 -14.73198 -14.48903 -14.29642 -14.11127 -13.93879 -13.71514 -13.55234 -13.32533 -13.04286 -13.00306 -12.82054 -12.72771 -12.39121 -12.29377 -12.17103 -12.01591 -12.00649 -11.55271 -11.09599 -11.05104 -10.85051 -10.60756 -10.30449 -9.77933 -9.67373 -8.18074 -6.34964 -0.00540 1.40831 1.44461 1.45325 1.49382 1.56000 1.70892 2.02430 2.04650 2.37113 2.60371 3.12626 3.55486 3.75380 3.77157 3.88572 3.96190 4.09722 4.11298 4.37742 4.60303 4.62397 4.72336 4.77745 4.87791 4.90200 4.92092 4.94430 4.96965 5.05466 5.08664 5.10594 5.31103 5.40101 5.40224 5.43271 5.58114 5.67985 5.82100 5.89089 6.09964 6.29850 6.71623 6.80327 6.90005 7.28833 7.44412 8.87879 Molecular weight = 308.16amu Principal moments of inertia in cm(-1) A = 0.019273 B = 0.003301 C = 0.003136 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1452.492020 B = 8481.352277 C = 8925.878061 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.089 4.089 3 C -0.144 4.144 4 C 0.137 3.863 5 H 0.112 0.888 6 N -0.698 5.698 7 C 0.606 3.394 8 O -0.549 6.549 9 C -0.114 4.114 10 C -0.117 4.117 11 C -0.231 4.231 12 C 0.008 3.992 13 O -0.178 6.178 14 C 0.508 3.492 15 O -0.582 6.582 16 N -0.695 5.695 17 C 0.273 3.727 18 H 0.002 0.998 19 C -0.131 4.131 20 C -0.548 4.548 21 H 0.071 0.929 22 C 0.017 3.983 23 N -0.915 5.915 24 Si 0.969 3.031 25 H -0.270 1.270 26 H -0.287 1.287 27 H -0.266 1.266 28 H 0.080 0.920 29 H 0.049 0.951 30 H 0.071 0.929 31 H 0.092 0.908 32 H 0.075 0.925 33 H 0.052 0.948 34 H 0.037 0.963 35 H 0.414 0.586 36 H 0.165 0.835 37 H 0.188 0.812 38 H 0.253 0.747 39 H 0.404 0.596 40 H 0.014 0.986 41 H 0.066 0.934 42 H 0.042 0.958 43 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.317 -6.618 15.179 21.250 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.108 4.108 3 C -0.201 4.201 4 C 0.028 3.972 5 H 0.130 0.870 6 N -0.349 5.349 7 C 0.394 3.606 8 O -0.430 6.430 9 C -0.166 4.166 10 C -0.138 4.138 11 C -0.250 4.250 12 C -0.061 4.061 13 O -0.073 6.073 14 C 0.293 3.707 15 O -0.463 6.463 16 N -0.344 5.344 17 C 0.170 3.830 18 H 0.020 0.980 19 C -0.190 4.190 20 C -0.586 4.586 21 H 0.089 0.911 22 C -0.183 4.183 23 N -0.553 5.553 24 Si 0.794 3.206 25 H -0.196 1.196 26 H -0.213 1.213 27 H -0.191 1.191 28 H 0.099 0.901 29 H 0.068 0.932 30 H 0.090 0.910 31 H 0.110 0.890 32 H 0.094 0.906 33 H 0.071 0.929 34 H 0.056 0.944 35 H 0.251 0.749 36 H 0.183 0.817 37 H 0.205 0.795 38 H 0.268 0.732 39 H 0.240 0.760 40 H 0.033 0.967 41 H 0.084 0.916 42 H 0.061 0.939 43 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 13.178 -6.205 14.884 20.825 hybrid contribution -0.513 -0.184 -0.927 1.076 sum 12.664 -6.389 13.956 19.899 Atomic orbital electron populations 1.21946 0.92858 1.03104 1.03211 1.21368 0.97451 0.96421 0.95597 1.21821 1.00968 0.95388 1.01949 1.21035 0.81481 1.00942 0.93714 0.86997 1.45673 1.06924 1.28175 1.54140 1.16734 0.84708 0.80790 0.78379 1.90842 1.62238 1.42160 1.47740 1.21779 0.89559 0.96831 1.08396 1.22282 0.93992 0.98668 0.98834 1.22245 0.97083 1.00253 1.05418 1.25425 0.85846 0.96605 0.98268 1.84106 1.16798 1.46288 1.60156 1.20712 0.82126 0.83140 0.84694 1.90637 1.52216 1.38389 1.65097 1.46283 1.17085 1.37262 1.33743 1.18365 0.93303 0.88444 0.82912 0.98047 1.21881 0.98235 0.98909 0.99958 1.21540 1.24229 1.02176 1.10681 0.91052 1.25742 0.98596 0.95725 0.98267 1.70045 1.44038 1.15141 1.26123 0.85384 0.78962 0.78868 0.77370 1.19583 1.21264 1.19052 0.90116 0.93185 0.90960 0.88988 0.90567 0.92886 0.94424 0.74908 0.81720 0.79497 0.73157 0.76031 0.96663 0.91554 0.93927 0.92551 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.68 8.54 71.98 0.61 -3.06 16 2 C -0.09 -2.33 2.87 -10.79 -0.03 -2.36 16 3 C -0.14 -3.94 8.63 71.98 0.62 -3.32 16 4 C 0.14 4.20 2.14 44.25 0.09 4.29 16 5 H 0.11 3.33 7.57 -2.39 -0.02 3.31 16 6 N -0.70 -20.93 4.51 -450.09 -2.03 -22.96 16 7 C 0.61 17.90 7.75 86.44 0.67 18.57 16 8 O -0.55 -18.24 16.53 -4.34 -0.07 -18.31 16 9 C -0.11 -2.88 7.13 24.07 0.17 -2.71 16 10 C -0.12 -2.39 10.62 22.39 0.24 -2.16 16 11 C -0.23 -3.23 10.88 22.07 0.24 -2.99 16 12 C 0.01 0.11 12.08 67.10 0.81 0.92 16 13 O -0.18 -3.95 10.40 -5.05 -0.05 -4.00 16 14 C 0.51 19.68 5.27 87.66 0.46 20.14 16 15 O -0.58 -26.71 14.92 -3.04 -0.05 -26.75 16 16 N -0.70 -28.17 4.03 -446.11 -1.80 -29.96 16 17 C 0.27 13.80 2.60 44.25 0.12 13.91 16 18 H 0.00 0.10 7.51 -2.39 -0.02 0.08 16 19 C -0.13 -6.41 9.26 71.98 0.67 -5.74 16 20 C -0.55 -28.66 8.73 25.60 0.22 -28.44 16 21 H 0.07 3.51 7.74 -2.91 -0.02 3.49 16 22 C 0.02 0.90 5.30 84.66 0.45 1.35 16 23 N -0.92 -51.81 11.32 21.45 0.24 -51.57 16 24 Si 0.97 41.81 29.54 68.60 2.03 43.83 16 25 H -0.27 -11.24 7.11 99.48 0.71 -10.53 16 26 H -0.29 -12.37 7.11 99.48 0.71 -11.66 16 27 H -0.27 -11.08 7.11 99.48 0.71 -10.38 16 28 H 0.08 1.61 8.14 -2.39 -0.02 1.59 16 29 H 0.05 1.42 6.95 -2.39 -0.02 1.40 16 30 H 0.07 1.55 8.14 -2.39 -0.02 1.53 16 31 H 0.09 2.31 8.14 -2.39 -0.02 2.29 16 32 H 0.08 1.74 8.14 -2.39 -0.02 1.72 16 33 H 0.05 1.44 7.76 -2.39 -0.02 1.42 16 34 H 0.04 1.25 6.68 -2.39 -0.02 1.23 16 35 H 0.41 12.74 7.55 -92.71 -0.70 12.04 16 36 H 0.17 3.08 8.06 -2.91 -0.02 3.06 16 37 H 0.19 1.34 8.06 -2.91 -0.02 1.32 16 38 H 0.25 0.92 8.06 -2.91 -0.02 0.90 16 39 H 0.40 14.14 8.33 -92.71 -0.77 13.37 16 40 H 0.01 0.69 8.14 -2.39 -0.02 0.67 16 41 H 0.07 3.59 6.07 -2.38 -0.01 3.57 16 42 H 0.04 1.90 8.14 -2.39 -0.02 1.88 16 43 H 0.27 14.24 8.31 -92.70 -0.77 13.47 16 Total: -1.00 -68.72 361.85 3.18 -65.54 By element: Atomic # 1 Polarization: 36.21 SS G_CDS: -0.43 Total: 35.78 kcal Atomic # 6 Polarization: 3.07 SS G_CDS: 5.35 Total: 8.41 kcal Atomic # 7 Polarization: -100.91 SS G_CDS: -3.59 Total: -104.49 kcal Atomic # 8 Polarization: -48.90 SS G_CDS: -0.17 Total: -49.07 kcal Atomic # 14 Polarization: 41.81 SS G_CDS: 2.03 Total: 43.83 kcal Total: -68.72 3.18 -65.54 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000064346297.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.742 kcal (2) G-P(sol) polarization free energy of solvation -68.719 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.461 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.184 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.536 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.278 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds