Wall clock time and date at job start Tue Mar 31 2020 10:26:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46502 * 109.47010 * 2 1 4 4 C 1.36934 * 120.00306 * 271.14923 * 3 2 1 5 5 H 1.08001 * 119.99901 * 7.73856 * 4 3 2 6 6 C 1.38818 * 120.00260 * 187.73966 * 4 3 2 7 7 N 1.31614 * 119.99996 * 24.59567 * 6 4 3 8 8 Si 1.86799 * 119.99786 * 204.59781 * 6 4 3 9 9 H 1.48497 * 109.47462 * 359.97438 * 8 6 4 10 10 H 1.48507 * 109.46828 * 119.99964 * 8 6 4 11 11 H 1.48495 * 109.47185 * 239.99335 * 8 6 4 12 12 C 1.46506 * 119.99977 * 91.15133 * 3 2 1 13 13 C 1.50695 * 109.46907 * 89.99901 * 12 3 2 14 14 O 1.21288 * 120.00408 * 359.97438 * 13 12 3 15 15 N 1.34785 * 119.99639 * 180.27844 * 13 12 3 16 16 C 1.39912 * 119.99898 * 175.21593 * 15 13 12 17 17 C 1.38815 * 120.01478 * 215.33900 * 16 15 13 18 18 C 1.38647 * 119.98126 * 179.79349 * 17 16 15 19 19 O 1.35898 * 119.98989 * 180.23099 * 18 17 16 20 20 C 1.42901 * 117.00114 * 180.23069 * 19 18 17 21 21 C 1.38685 * 120.01885 * 0.46096 * 18 17 16 22 22 C 1.38687 * 120.03170 * 359.79548 * 21 18 17 23 23 O 1.35887 * 119.99800 * 179.97438 * 22 21 18 24 24 C 1.42900 * 116.99915 * 0.02562 * 23 22 21 25 25 C 1.38645 * 120.01095 * 359.97132 * 22 21 18 26 26 H 1.09003 * 109.46432 * 299.99645 * 1 2 3 27 27 H 1.08999 * 109.47494 * 59.99289 * 1 2 3 28 28 H 1.08994 * 109.47343 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.46925 * 240.00355 * 2 1 3 30 30 H 1.08992 * 109.47504 * 120.00321 * 2 1 3 31 31 H 0.96998 * 120.00213 * 180.02562 * 7 6 4 32 32 H 1.09001 * 109.46777 * 330.00150 * 12 3 2 33 33 H 1.08993 * 109.46850 * 209.99966 * 12 3 2 34 34 H 0.96995 * 120.00178 * 355.21783 * 15 13 12 35 35 H 1.07992 * 120.01129 * 0.02562 * 17 16 15 36 36 H 1.09000 * 109.47207 * 179.97438 * 20 19 18 37 37 H 1.09004 * 109.47233 * 300.00393 * 20 19 18 38 38 H 1.08995 * 109.47105 * 59.99734 * 20 19 18 39 39 H 1.08010 * 119.98773 * 179.76736 * 21 18 17 40 40 H 1.08997 * 109.47512 * 180.02562 * 24 23 22 41 41 H 1.09002 * 109.47282 * 300.00432 * 24 23 22 42 42 H 1.08998 * 109.46974 * 60.00304 * 24 23 22 43 43 H 1.08002 * 120.00629 * 179.97438 * 25 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2241 2.0348 -1.1856 5 1 1.9103 1.5808 -2.1140 6 6 2.8361 3.2807 -1.1943 7 7 3.6343 3.6287 -0.2074 8 14 2.5268 4.4633 -2.6068 9 1 1.5987 3.8373 -3.5824 10 1 1.9235 5.7146 -2.0816 11 1 3.8127 4.7783 -3.2793 12 6 2.2865 2.0634 1.2685 13 6 3.7177 1.8237 1.6749 14 8 4.4423 1.1492 0.9742 15 7 4.1908 2.3540 2.8202 16 6 5.4877 2.0502 3.2484 17 6 5.7593 1.9217 4.6036 18 6 7.0437 1.6164 5.0269 19 8 7.3088 1.4859 6.3534 20 6 8.6550 1.1755 6.7186 21 6 8.0592 1.4487 4.0974 22 6 7.7898 1.5822 2.7435 23 8 8.7854 1.4183 1.8333 24 6 10.0847 1.1094 2.3416 25 6 6.5047 1.8827 2.3184 26 1 -0.3632 0.5138 0.8901 27 1 -0.3634 0.5139 -0.8899 28 1 -0.3634 -1.0276 0.0005 29 1 1.8933 -0.5138 -0.8900 30 1 1.8934 -0.5138 0.8899 31 1 4.0617 4.4994 -0.2133 32 1 1.6202 1.6741 2.0383 33 1 2.1171 3.1334 1.1485 34 1 3.6323 2.9462 3.3475 35 1 4.9695 2.0558 5.3278 36 1 8.7290 1.1000 7.8035 37 1 8.9442 0.2263 6.2674 38 1 9.3188 1.9636 6.3634 39 1 9.0604 1.2146 4.4279 40 1 10.7841 1.0054 1.5121 41 1 10.4181 1.9124 2.9989 42 1 10.0431 0.1752 2.9015 43 1 6.2951 1.9870 1.2641 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000068958264.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:26:19 Heat of formation + Delta-G solvation = -44.594308 kcal Electronic energy + Delta-G solvation = -25983.680734 eV Core-core repulsion = 22224.482916 eV Total energy + Delta-G solvation = -3759.197818 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 308.157 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -40.37293 -38.82408 -38.61315 -36.50225 -35.24438 -33.22197 -31.88021 -30.03408 -29.59953 -28.75409 -27.82488 -26.51876 -26.39643 -23.68429 -22.30149 -21.80642 -20.51065 -19.49794 -18.48581 -17.04340 -16.73350 -16.13639 -15.85663 -15.81913 -15.38333 -15.30024 -15.20717 -14.77335 -14.50279 -13.88438 -13.61800 -13.48163 -13.02556 -12.70882 -12.47529 -12.35410 -12.22662 -12.05080 -11.80593 -11.51892 -11.32419 -11.20466 -11.08363 -10.99139 -10.74301 -10.66266 -10.36372 -10.15518 -9.89309 -9.80293 -9.20343 -8.81635 -8.28945 -7.69663 -7.51641 -6.95475 -5.83724 -3.07839 1.67323 1.85373 3.20747 3.40111 3.45746 3.49076 3.51181 3.92082 4.13760 4.35050 4.55424 4.94195 5.04651 5.05018 5.12988 5.16031 5.33328 5.33768 5.35305 5.44741 5.46829 5.52962 5.76571 5.96066 5.98232 6.14168 6.26854 6.32264 6.46056 6.54821 6.58417 6.63994 6.73161 6.83699 7.00839 7.06711 7.17108 7.34639 7.53424 7.78255 7.82224 8.22026 8.43954 9.14331 9.54127 9.82955 10.24989 11.27396 Molecular weight = 308.16amu Principal moments of inertia in cm(-1) A = 0.016266 B = 0.003973 C = 0.003578 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1720.978773 B = 7045.484691 C = 7823.447179 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.145 3.855 3 N -0.574 5.574 4 C -0.241 4.241 5 H 0.079 0.921 6 C -0.003 4.003 7 N -0.903 5.903 8 Si 0.902 3.098 9 H -0.280 1.280 10 H -0.290 1.290 11 H -0.294 1.294 12 C 0.165 3.835 13 C 0.525 3.475 14 O -0.505 6.505 15 N -0.686 5.686 16 C 0.247 3.753 17 C -0.229 4.229 18 C 0.172 3.828 19 O -0.317 6.317 20 C 0.030 3.970 21 C -0.326 4.326 22 C 0.175 3.825 23 O -0.310 6.310 24 C 0.030 3.970 25 C -0.183 4.183 26 H 0.044 0.956 27 H 0.053 0.947 28 H 0.038 0.962 29 H 0.046 0.954 30 H 0.035 0.965 31 H 0.254 0.746 32 H 0.041 0.959 33 H 0.110 0.890 34 H 0.402 0.598 35 H 0.129 0.871 36 H 0.096 0.904 37 H 0.052 0.948 38 H 0.052 0.948 39 H 0.126 0.874 40 H 0.097 0.903 41 H 0.051 0.949 42 H 0.051 0.949 43 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.185 -3.315 12.967 15.191 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.018 3.982 3 N -0.293 5.293 4 C -0.370 4.370 5 H 0.097 0.903 6 C -0.199 4.199 7 N -0.550 5.550 8 Si 0.733 3.267 9 H -0.205 1.205 10 H -0.217 1.217 11 H -0.221 1.221 12 C 0.034 3.966 13 C 0.313 3.687 14 O -0.375 6.375 15 N -0.332 5.332 16 C 0.149 3.851 17 C -0.251 4.251 18 C 0.127 3.873 19 O -0.231 6.231 20 C -0.065 4.065 21 C -0.346 4.346 22 C 0.129 3.871 23 O -0.223 6.223 24 C -0.066 4.066 25 C -0.204 4.204 26 H 0.063 0.937 27 H 0.072 0.928 28 H 0.058 0.942 29 H 0.065 0.935 30 H 0.054 0.946 31 H 0.064 0.936 32 H 0.059 0.941 33 H 0.127 0.873 34 H 0.237 0.763 35 H 0.147 0.853 36 H 0.114 0.886 37 H 0.071 0.929 38 H 0.071 0.929 39 H 0.144 0.856 40 H 0.115 0.885 41 H 0.069 0.931 42 H 0.070 0.930 43 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges 7.528 -3.680 12.272 14.860 hybrid contribution 0.463 0.958 -0.264 1.097 sum 7.992 -2.722 12.008 14.679 Atomic orbital electron populations 1.22308 0.99405 0.99197 1.01512 1.20742 0.91909 0.86196 0.99348 1.43984 1.73785 1.09648 1.01922 1.19315 1.32990 0.98684 0.86015 0.90347 1.24657 0.97754 0.99362 0.98155 1.69854 1.29804 1.21201 1.34110 0.86197 0.77543 0.81268 0.81705 1.20502 1.21680 1.22089 1.20779 0.88324 1.00612 0.86906 1.22697 0.92757 0.76220 0.77012 1.90530 1.58969 1.38821 1.49228 1.44214 1.12016 1.50112 1.26848 1.17163 0.85338 0.92210 0.90398 1.19905 0.95350 1.15199 0.94630 1.18235 0.93034 0.94364 0.81694 1.86039 1.29867 1.85728 1.21440 1.22978 0.82051 1.00132 1.01362 1.21013 0.99959 1.20820 0.92822 1.18543 0.88245 0.93493 0.86854 1.86145 1.17270 1.85116 1.33789 1.22986 0.82844 0.99825 1.00919 1.20623 0.88301 1.08793 1.02722 0.93726 0.92811 0.94249 0.93516 0.94610 0.93559 0.94120 0.87276 0.76312 0.85294 0.88554 0.92916 0.92929 0.85582 0.88505 0.93055 0.93035 0.82522 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.87 10.24 37.16 0.38 -2.49 16 2 C 0.14 3.03 6.39 -4.04 -0.03 3.00 16 3 N -0.57 -14.03 2.02 -174.61 -0.35 -14.38 16 4 C -0.24 -6.51 9.71 -15.06 -0.15 -6.65 16 5 H 0.08 2.11 7.94 -52.49 -0.42 1.69 16 6 C 0.00 -0.07 4.92 -17.43 -0.09 -0.16 16 7 N -0.90 -24.86 8.97 55.49 0.50 -24.36 16 8 Si 0.90 21.64 29.62 -169.99 -5.03 16.61 16 9 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 10 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 11 H -0.29 -7.29 7.11 56.52 0.40 -6.89 16 12 C 0.16 3.69 5.43 -5.19 -0.03 3.66 16 13 C 0.53 12.16 5.76 -10.98 -0.06 12.10 16 14 O -0.50 -13.79 13.69 5.55 0.08 -13.71 16 15 N -0.69 -13.15 5.33 -9.89 -0.05 -13.20 16 16 C 0.25 4.76 6.28 -83.74 -0.53 4.23 16 17 C -0.23 -3.79 9.90 -39.22 -0.39 -4.18 16 18 C 0.17 2.70 6.68 -39.27 -0.26 2.44 16 19 O -0.32 -4.30 10.49 -19.42 -0.20 -4.51 16 20 C 0.03 0.27 9.81 101.05 0.99 1.26 16 21 C -0.33 -5.00 8.02 -39.25 -0.31 -5.32 16 22 C 0.17 3.20 6.68 -39.27 -0.26 2.94 16 23 O -0.31 -5.38 10.49 -19.39 -0.20 -5.58 16 24 C 0.03 0.34 9.81 101.05 0.99 1.33 16 25 C -0.18 -3.88 8.63 -39.22 -0.34 -4.22 16 26 H 0.04 0.75 8.14 -51.93 -0.42 0.32 16 27 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 28 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 29 H 0.05 1.01 8.05 -51.93 -0.42 0.59 16 30 H 0.04 0.72 8.06 -51.93 -0.42 0.31 16 31 H 0.25 6.93 8.31 -40.82 -0.34 6.59 16 32 H 0.04 0.77 8.07 -51.93 -0.42 0.35 16 33 H 0.11 2.59 6.23 -51.93 -0.32 2.27 16 34 H 0.40 6.30 8.82 -40.82 -0.36 5.94 16 35 H 0.13 1.86 8.06 -52.49 -0.42 1.44 16 36 H 0.10 0.62 8.14 -51.93 -0.42 0.20 16 37 H 0.05 0.44 7.66 -51.93 -0.40 0.04 16 38 H 0.05 0.43 7.66 -51.93 -0.40 0.03 16 39 H 0.13 1.54 4.52 -52.48 -0.24 1.30 16 40 H 0.10 0.88 8.14 -51.93 -0.42 0.45 16 41 H 0.05 0.50 7.66 -51.93 -0.40 0.10 16 42 H 0.05 0.51 7.66 -51.93 -0.40 0.11 16 43 H 0.16 3.99 6.26 -52.49 -0.33 3.67 16 LS Contribution 355.85 15.07 5.36 5.36 Total: -1.00 -33.13 355.85 -6.17 -39.30 By element: Atomic # 1 Polarization: 12.71 SS G_CDS: -6.18 Total: 6.52 kcal Atomic # 6 Polarization: 8.02 SS G_CDS: -0.08 Total: 7.94 kcal Atomic # 7 Polarization: -52.04 SS G_CDS: 0.09 Total: -51.94 kcal Atomic # 8 Polarization: -23.47 SS G_CDS: -0.33 Total: -23.80 kcal Atomic # 14 Polarization: 21.64 SS G_CDS: -5.03 Total: 16.61 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -33.13 -6.17 -39.30 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000068958264.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.291 kcal (2) G-P(sol) polarization free energy of solvation -33.130 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.421 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.173 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.303 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.594 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds