Wall clock time and date at job start Tue Mar 31 2020 10:26:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46497 * 109.47531 * 2 1 4 4 C 1.36939 * 119.99763 * 274.98715 * 3 2 1 5 5 H 1.07990 * 120.00675 * 24.10948 * 4 3 2 6 6 C 1.38816 * 119.99301 * 204.10101 * 4 3 2 7 7 N 1.31621 * 120.00382 * 5.05348 * 6 4 3 8 8 Si 1.86803 * 119.99758 * 185.04376 * 6 4 3 9 9 H 1.48502 * 109.46829 * 60.00724 * 8 6 4 10 10 H 1.48503 * 109.47170 * 180.02562 * 8 6 4 11 11 H 1.48494 * 109.47347 * 300.00690 * 8 6 4 12 12 C 1.46498 * 119.99796 * 94.97872 * 3 2 1 13 13 C 1.50702 * 109.46895 * 90.00264 * 12 3 2 14 14 O 1.21302 * 119.99903 * 0.02562 * 13 12 3 15 15 N 1.34778 * 120.00412 * 179.97438 * 13 12 3 16 16 C 1.40300 * 120.00075 * 185.83319 * 15 13 12 17 17 C 1.38696 * 120.03866 * 24.69908 * 16 15 13 18 18 C 1.38168 * 120.04097 * 179.97438 * 17 16 15 19 19 C 1.38733 * 120.10701 * 359.97438 * 18 17 16 20 20 O 1.35960 * 119.97012 * 180.02562 * 19 18 17 21 21 C 1.42905 * 116.99661 * 0.02562 * 20 19 18 22 22 C 1.38682 * 120.06601 * 359.78925 * 19 18 17 23 23 C 1.38509 * 119.96233 * 0.46590 * 22 19 18 24 24 O 1.35971 * 120.05608 * 179.79206 * 23 22 19 25 25 C 1.42901 * 116.99501 * 359.72445 * 24 23 22 26 26 H 1.09006 * 109.47345 * 179.97438 * 1 2 3 27 27 H 1.09006 * 109.47053 * 300.00053 * 1 2 3 28 28 H 1.09003 * 109.47212 * 59.99840 * 1 2 3 29 29 H 1.09010 * 109.46674 * 240.00253 * 2 1 3 30 30 H 1.08994 * 109.47460 * 120.00704 * 2 1 3 31 31 H 0.96996 * 120.00267 * 179.97438 * 7 6 4 32 32 H 1.08993 * 109.47296 * 330.00625 * 12 3 2 33 33 H 1.08995 * 109.47076 * 210.00272 * 12 3 2 34 34 H 0.97004 * 119.99352 * 5.83537 * 15 13 12 35 35 H 1.08001 * 119.97898 * 359.97438 * 17 16 15 36 36 H 1.08001 * 119.94875 * 179.97438 * 18 17 16 37 37 H 1.09004 * 109.47329 * 59.99566 * 21 20 19 38 38 H 1.08997 * 109.47204 * 179.97438 * 21 20 19 39 39 H 1.09010 * 109.46983 * 299.99727 * 21 20 19 40 40 H 1.08000 * 120.01488 * 180.25739 * 22 19 18 41 41 H 1.08997 * 109.46896 * 179.97438 * 25 24 23 42 42 H 1.08997 * 109.47632 * 59.99656 * 25 24 23 43 43 H 1.09000 * 109.46907 * 299.99450 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1494 2.0610 -1.1815 5 1 1.5609 1.7714 -2.0393 6 6 3.0388 3.1226 -1.2762 7 7 3.8274 3.4130 -0.2632 8 14 3.1165 4.1390 -2.8416 9 1 1.7908 4.7578 -3.0963 10 1 4.1397 5.2045 -2.6897 11 1 3.4811 3.2624 -3.9834 12 6 2.3664 2.0350 1.2639 13 6 3.8202 1.7873 1.5740 14 8 4.4990 1.1297 0.8136 15 7 4.3666 2.2973 2.6955 16 6 5.7451 2.1718 2.9241 17 6 6.6144 2.0122 1.8552 18 6 7.9721 1.8891 2.0801 19 6 8.4690 1.9254 3.3749 20 8 9.8056 1.8045 3.5930 21 6 10.6386 1.6438 2.4431 22 6 7.6044 2.0897 4.4466 23 6 6.2423 2.2080 4.2247 24 8 5.3924 2.3649 5.2744 25 6 5.9725 2.3931 6.5801 26 1 -0.3634 -1.0277 -0.0005 27 1 -0.3633 0.5139 0.8900 28 1 -0.3634 0.5139 -0.8900 29 1 1.8932 -0.5139 -0.8901 30 1 1.8933 -0.5139 0.8898 31 1 4.4491 4.1546 -0.3296 32 1 1.7497 1.6282 2.0653 33 1 2.1906 3.1073 1.1787 34 1 3.8066 2.7510 3.3447 35 1 6.2298 1.9841 0.8463 36 1 8.6476 1.7645 1.2467 37 1 10.5256 2.5082 1.7887 38 1 11.6790 1.5597 2.7570 39 1 10.3467 0.7411 1.9062 40 1 7.9926 2.1220 5.4539 41 1 5.1866 2.5235 7.3240 42 1 6.6769 3.2222 6.6470 43 1 6.4964 1.4554 6.7651 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000068958701.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:26:23 Heat of formation + Delta-G solvation = -42.587466 kcal Electronic energy + Delta-G solvation = -26242.393522 eV Core-core repulsion = 22483.282727 eV Total energy + Delta-G solvation = -3759.110795 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 308.157 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -40.33075 -38.79929 -38.34047 -36.22844 -35.17373 -33.20681 -31.82614 -30.17760 -29.48506 -28.75285 -27.14366 -27.09064 -25.98469 -23.63039 -22.34014 -21.57197 -20.52795 -19.24280 -18.47119 -17.30302 -16.51347 -16.26633 -15.99976 -15.77802 -15.38013 -15.26751 -14.92745 -14.69776 -13.90560 -13.80265 -13.48051 -13.29306 -12.87466 -12.76072 -12.44559 -12.32160 -12.20552 -12.04176 -11.65252 -11.47108 -11.38875 -11.24265 -10.95906 -10.82104 -10.78892 -10.56616 -10.38993 -10.16243 -9.89069 -9.78294 -9.14633 -8.70000 -8.32187 -8.09562 -6.84507 -6.73480 -5.80864 -3.21593 1.75665 1.86063 3.32333 3.39765 3.44829 3.45581 3.54930 3.99445 4.18357 4.43635 4.64710 5.08121 5.12866 5.20963 5.22456 5.22968 5.35439 5.44877 5.45859 5.49413 5.52624 5.65817 5.79980 6.01634 6.03514 6.23049 6.30483 6.35418 6.41353 6.59470 6.61743 6.78032 6.87301 6.87942 7.07828 7.12976 7.18727 7.42983 7.53107 7.76903 7.90454 8.34491 8.63163 9.20000 9.71038 9.88038 10.30661 11.29415 Molecular weight = 308.16amu Principal moments of inertia in cm(-1) A = 0.014131 B = 0.004478 C = 0.003827 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1981.003396 B = 6251.162557 C = 7314.275538 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.145 3.855 3 N -0.575 5.575 4 C -0.246 4.246 5 H 0.071 0.929 6 C 0.006 3.994 7 N -0.907 5.907 8 Si 0.914 3.086 9 H -0.286 1.286 10 H -0.292 1.292 11 H -0.285 1.285 12 C 0.175 3.825 13 C 0.535 3.465 14 O -0.515 6.515 15 N -0.679 5.679 16 C 0.128 3.872 17 C -0.058 4.058 18 C -0.218 4.218 19 C 0.119 3.881 20 O -0.324 6.324 21 C 0.030 3.970 22 C -0.222 4.222 23 C 0.108 3.892 24 O -0.314 6.314 25 C 0.031 3.969 26 H 0.038 0.962 27 H 0.043 0.957 28 H 0.051 0.949 29 H 0.044 0.956 30 H 0.036 0.964 31 H 0.256 0.744 32 H 0.034 0.966 33 H 0.098 0.902 34 H 0.399 0.601 35 H 0.169 0.831 36 H 0.124 0.876 37 H 0.054 0.946 38 H 0.094 0.906 39 H 0.054 0.946 40 H 0.130 0.870 41 H 0.096 0.904 42 H 0.052 0.948 43 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.019 -1.574 11.409 12.995 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.018 3.982 3 N -0.295 5.295 4 C -0.375 4.375 5 H 0.089 0.911 6 C -0.191 4.191 7 N -0.553 5.553 8 Si 0.745 3.255 9 H -0.212 1.212 10 H -0.218 1.218 11 H -0.211 1.211 12 C 0.045 3.955 13 C 0.323 3.677 14 O -0.388 6.388 15 N -0.325 5.325 16 C 0.031 3.969 17 C -0.078 4.078 18 C -0.238 4.238 19 C 0.074 3.926 20 O -0.238 6.238 21 C -0.065 4.065 22 C -0.242 4.242 23 C 0.061 3.939 24 O -0.228 6.228 25 C -0.064 4.064 26 H 0.057 0.943 27 H 0.062 0.938 28 H 0.070 0.930 29 H 0.063 0.937 30 H 0.054 0.946 31 H 0.067 0.933 32 H 0.051 0.949 33 H 0.115 0.885 34 H 0.233 0.767 35 H 0.186 0.814 36 H 0.142 0.858 37 H 0.072 0.928 38 H 0.112 0.888 39 H 0.073 0.927 40 H 0.148 0.852 41 H 0.114 0.886 42 H 0.071 0.929 43 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 6.402 -1.907 10.918 12.799 hybrid contribution 0.427 0.916 -0.579 1.165 sum 6.829 -0.991 10.339 12.430 Atomic orbital electron populations 1.22319 0.99680 0.99118 1.01352 1.20753 0.91660 0.86514 0.99231 1.43681 1.74490 1.08893 1.02456 1.19149 1.17248 1.10892 0.90238 0.91081 1.24945 0.96042 1.00493 0.97634 1.69372 1.24991 1.30556 1.30364 0.86184 0.77027 0.79417 0.82888 1.21218 1.21763 1.21141 1.20392 0.88420 0.99725 0.86995 1.22105 0.92488 0.75689 0.77404 1.90424 1.62785 1.39654 1.45942 1.43916 1.04726 1.59154 1.24675 1.17226 0.85863 1.04669 0.89157 1.21424 0.90652 0.94981 1.00778 1.21100 0.96656 1.10945 0.95075 1.18539 0.82335 0.98584 0.93181 1.85975 1.15273 1.88385 1.34203 1.22974 0.93934 1.01249 0.88358 1.19968 0.90826 1.14948 0.98480 1.18387 0.88232 1.00973 0.86324 1.86031 1.34471 1.88461 1.13846 1.22972 0.99991 1.01195 0.82290 0.94316 0.93758 0.93035 0.93713 0.94563 0.93334 0.94852 0.88452 0.76713 0.81385 0.85791 0.92759 0.88805 0.92736 0.85191 0.88580 0.92917 0.92906 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.93 10.21 37.16 0.38 -2.55 16 2 C 0.14 3.08 6.39 -4.05 -0.03 3.05 16 3 N -0.58 -14.14 2.02 -174.62 -0.35 -14.49 16 4 C -0.25 -6.59 9.67 -15.06 -0.15 -6.74 16 5 H 0.07 1.88 7.83 -52.49 -0.41 1.47 16 6 C 0.01 0.16 5.22 -17.43 -0.09 0.07 16 7 N -0.91 -24.66 7.99 55.49 0.44 -24.21 16 8 Si 0.91 21.77 29.56 -169.99 -5.02 16.74 16 9 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 10 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 11 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 12 C 0.18 4.00 5.41 -5.19 -0.03 3.97 16 13 C 0.53 12.54 5.40 -10.98 -0.06 12.48 16 14 O -0.52 -13.91 12.77 5.54 0.07 -13.84 16 15 N -0.68 -13.72 5.29 -9.71 -0.05 -13.77 16 16 C 0.13 2.56 6.45 -83.42 -0.54 2.02 16 17 C -0.06 -1.20 8.72 -39.44 -0.34 -1.55 16 18 C -0.22 -3.87 9.03 -39.42 -0.36 -4.22 16 19 C 0.12 1.97 6.68 -39.23 -0.26 1.71 16 20 O -0.32 -4.75 10.50 -19.62 -0.21 -4.96 16 21 C 0.03 0.33 9.81 101.05 0.99 1.32 16 22 C -0.22 -3.54 8.97 -39.32 -0.35 -3.89 16 23 C 0.11 1.86 6.70 -39.09 -0.26 1.60 16 24 O -0.31 -4.70 9.91 -19.65 -0.19 -4.89 16 25 C 0.03 0.31 9.81 101.05 0.99 1.31 16 26 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 27 H 0.04 0.76 8.14 -51.93 -0.42 0.34 16 28 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 29 H 0.04 0.98 8.08 -51.92 -0.42 0.56 16 30 H 0.04 0.74 8.03 -51.93 -0.42 0.32 16 31 H 0.26 7.01 8.31 -40.82 -0.34 6.67 16 32 H 0.03 0.66 8.07 -51.93 -0.42 0.24 16 33 H 0.10 2.35 6.83 -51.93 -0.35 2.00 16 34 H 0.40 7.04 8.34 -40.82 -0.34 6.70 16 35 H 0.17 4.12 5.78 -52.49 -0.30 3.82 16 36 H 0.12 1.94 6.28 -52.49 -0.33 1.61 16 37 H 0.05 0.56 7.66 -51.93 -0.40 0.17 16 38 H 0.09 0.75 8.14 -51.93 -0.42 0.33 16 39 H 0.05 0.57 7.66 -51.92 -0.40 0.17 16 40 H 0.13 1.74 6.30 -52.49 -0.33 1.41 16 41 H 0.10 0.74 8.14 -51.93 -0.42 0.32 16 42 H 0.05 0.49 7.65 -51.93 -0.40 0.09 16 43 H 0.05 0.50 7.67 -51.93 -0.40 0.10 16 LS Contribution 353.05 15.07 5.32 5.32 Total: -1.00 -31.65 353.05 -6.26 -37.91 By element: Atomic # 1 Polarization: 13.78 SS G_CDS: -6.17 Total: 7.61 kcal Atomic # 6 Polarization: 8.67 SS G_CDS: -0.10 Total: 8.57 kcal Atomic # 7 Polarization: -52.51 SS G_CDS: 0.04 Total: -52.47 kcal Atomic # 8 Polarization: -23.36 SS G_CDS: -0.33 Total: -23.69 kcal Atomic # 14 Polarization: 21.77 SS G_CDS: -5.02 Total: 16.74 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -31.65 -6.26 -37.91 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000068958701.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.675 kcal (2) G-P(sol) polarization free energy of solvation -31.650 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.325 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.263 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.913 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.587 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds