Wall clock time and date at job start Tue Mar 31 2020 10:26:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46505 * 109.47196 * 2 1 4 4 C 1.36936 * 119.99989 * 274.34478 * 3 2 1 5 5 H 1.07999 * 119.99754 * 318.56323 * 4 3 2 6 6 C 1.38810 * 120.00065 * 138.56662 * 4 3 2 7 7 N 1.31620 * 119.99917 * 161.50577 * 6 4 3 8 8 Si 1.86796 * 120.00222 * 341.50339 * 6 4 3 9 9 H 1.48496 * 109.47295 * 95.30973 * 8 6 4 10 10 H 1.48504 * 109.47408 * 215.31368 * 8 6 4 11 11 H 1.48503 * 109.47128 * 335.31175 * 8 6 4 12 12 C 1.46500 * 119.99986 * 94.33831 * 3 2 1 13 13 C 1.50704 * 109.46721 * 90.00313 * 12 3 2 14 14 O 1.21293 * 119.99857 * 359.97438 * 13 12 3 15 15 N 1.34775 * 119.99651 * 180.02562 * 13 12 3 16 16 C 1.40116 * 119.99687 * 184.73652 * 15 13 12 17 17 C 1.38703 * 120.06167 * 22.44965 * 16 15 13 18 18 C 1.38622 * 119.92962 * 179.97438 * 17 16 15 19 19 O 1.35975 * 119.97079 * 180.02562 * 18 17 16 20 20 C 1.42903 * 117.00032 * 180.02562 * 19 18 17 21 21 C 1.38722 * 120.05335 * 359.97438 * 18 17 16 22 22 C 1.38228 * 120.12407 * 0.04144 * 21 18 17 23 23 C 1.38520 * 120.07000 * 359.96173 * 22 21 18 24 24 O 1.36053 * 120.02666 * 180.29479 * 23 22 21 25 25 C 1.42900 * 117.00133 * 359.72153 * 24 23 22 26 26 H 1.08993 * 109.47153 * 179.97438 * 1 2 3 27 27 H 1.09003 * 109.46966 * 300.00069 * 1 2 3 28 28 H 1.09002 * 109.47215 * 59.99521 * 1 2 3 29 29 H 1.08996 * 109.46938 * 240.00626 * 2 1 3 30 30 H 1.08994 * 109.47215 * 119.99837 * 2 1 3 31 31 H 0.97004 * 120.00072 * 179.97438 * 7 6 4 32 32 H 1.08992 * 109.47160 * 330.00500 * 12 3 2 33 33 H 1.08997 * 109.47072 * 209.99897 * 12 3 2 34 34 H 0.97003 * 120.00276 * 4.73361 * 15 13 12 35 35 H 1.07999 * 120.03319 * 359.95262 * 17 16 15 36 36 H 1.09001 * 109.46831 * 299.99567 * 20 19 18 37 37 H 1.08997 * 109.47207 * 59.99763 * 20 19 18 38 38 H 1.09004 * 109.47207 * 179.97438 * 20 19 18 39 39 H 1.08000 * 119.93453 * 180.02562 * 21 18 17 40 40 H 1.08000 * 119.96463 * 179.97438 * 22 21 18 41 41 H 1.09001 * 109.47067 * 59.99770 * 25 24 23 42 42 H 1.08994 * 109.46789 * 180.02562 * 25 24 23 43 43 H 1.09000 * 109.47112 * 300.00306 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3813 0.0000 4 6 2.1619 2.0567 -1.1825 5 1 2.5729 1.5537 -2.0453 6 6 1.7792 3.3880 -1.2722 7 7 2.2331 4.1385 -2.2536 8 14 0.6199 4.1144 -0.0004 9 1 1.4094 4.7880 1.0616 10 1 -0.2755 5.1026 -0.6538 11 1 -0.1961 3.0298 0.6022 12 6 2.3530 2.0399 1.2651 13 6 3.8036 1.7934 1.5913 14 8 4.4900 1.1323 0.8410 15 7 4.3377 2.3068 2.7172 16 6 5.7080 2.1625 2.9715 17 6 6.5883 1.9313 1.9249 18 6 7.9436 1.7895 2.1795 19 8 8.8074 1.5634 1.1541 20 6 10.1900 1.4267 1.4887 21 6 8.4193 1.8792 3.4796 22 6 7.5438 2.1092 4.5243 23 6 6.1886 2.2516 4.2757 24 8 5.3285 2.4840 5.3039 25 6 5.8912 2.5631 6.6151 26 1 -0.3633 -1.0276 -0.0005 27 1 -0.3633 0.5139 0.8900 28 1 -0.3634 0.5139 -0.8900 29 1 1.8933 -0.5137 -0.8900 30 1 1.8933 -0.5138 0.8899 31 1 1.9654 5.0687 -2.3165 32 1 1.7279 1.6361 2.0614 33 1 2.1782 3.1119 1.1740 34 1 3.7735 2.7763 3.3514 35 1 6.2183 1.8616 0.9127 36 1 10.5394 2.3402 1.9698 37 1 10.3175 0.5855 2.1699 38 1 10.7676 1.2497 0.5813 39 1 9.4755 1.7688 3.6757 40 1 7.9169 2.1781 5.5355 41 1 6.6166 3.3758 6.6507 42 1 5.0988 2.7507 7.3397 43 1 6.3872 1.6226 6.8550 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000068958955.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:26:27 Heat of formation + Delta-G solvation = -41.654230 kcal Electronic energy + Delta-G solvation = -25982.001998 eV Core-core repulsion = 22222.931672 eV Total energy + Delta-G solvation = -3759.070327 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 308.157 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.69011 -39.13203 -38.83957 -36.45004 -35.59253 -34.03125 -31.89201 -30.64559 -29.90529 -29.19086 -27.48059 -26.89296 -26.51685 -23.86184 -22.80971 -21.82440 -20.56529 -19.76679 -18.59361 -17.68223 -17.33377 -16.65893 -16.16264 -15.90207 -15.60169 -15.51958 -15.31922 -14.75147 -14.52360 -14.09080 -13.83639 -13.45388 -13.28208 -13.02618 -12.79055 -12.70477 -12.63309 -12.38054 -12.00434 -11.77975 -11.66835 -11.62157 -11.35953 -11.01564 -10.88085 -10.61716 -10.58168 -10.19976 -10.02823 -9.97702 -9.62735 -9.07117 -8.54183 -8.13619 -7.41993 -6.83670 -5.98960 -3.46952 1.36583 1.54699 3.19296 3.19643 3.21328 3.28813 3.42436 3.46422 3.65811 3.94425 4.46705 4.71585 4.88189 4.96172 5.01456 5.04486 5.06010 5.11413 5.23968 5.29073 5.32648 5.42379 5.49091 5.57529 5.89624 5.97244 5.97916 6.04604 6.10165 6.20490 6.30903 6.37285 6.45033 6.53111 6.54312 6.86800 6.98163 7.10454 7.33206 7.60334 7.83240 8.06478 8.44506 8.76791 8.97521 9.66914 10.06587 11.16140 Molecular weight = 308.16amu Principal moments of inertia in cm(-1) A = 0.014026 B = 0.004377 C = 0.003930 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1995.742508 B = 6395.249183 C = 7123.799544 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.150 3.850 3 N -0.578 5.578 4 C -0.260 4.260 5 H 0.080 0.920 6 C 0.035 3.965 7 N -0.896 5.896 8 Si 0.870 3.130 9 H -0.286 1.286 10 H -0.297 1.297 11 H -0.261 1.261 12 C 0.120 3.880 13 C 0.483 3.517 14 O -0.493 6.493 15 N -0.675 5.675 16 C 0.181 3.819 17 C -0.137 4.137 18 C 0.118 3.882 19 O -0.312 6.312 20 C 0.030 3.970 21 C -0.204 4.204 22 C -0.149 4.149 23 C 0.048 3.952 24 O -0.320 6.320 25 C 0.032 3.968 26 H 0.040 0.960 27 H 0.041 0.959 28 H 0.059 0.941 29 H 0.053 0.947 30 H 0.038 0.962 31 H 0.264 0.736 32 H 0.074 0.926 33 H 0.083 0.917 34 H 0.411 0.589 35 H 0.171 0.829 36 H 0.052 0.948 37 H 0.052 0.948 38 H 0.097 0.903 39 H 0.126 0.874 40 H 0.129 0.871 41 H 0.052 0.948 42 H 0.097 0.903 43 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.988 -3.549 17.702 20.633 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C 0.024 3.976 3 N -0.298 5.298 4 C -0.389 4.389 5 H 0.098 0.902 6 C -0.165 4.165 7 N -0.537 5.537 8 Si 0.700 3.300 9 H -0.214 1.214 10 H -0.225 1.225 11 H -0.185 1.185 12 C -0.011 4.011 13 C 0.269 3.731 14 O -0.365 6.365 15 N -0.321 5.321 16 C 0.083 3.917 17 C -0.158 4.158 18 C 0.073 3.927 19 O -0.225 6.225 20 C -0.066 4.066 21 C -0.224 4.224 22 C -0.169 4.169 23 C 0.001 3.999 24 O -0.234 6.234 25 C -0.063 4.063 26 H 0.059 0.941 27 H 0.060 0.940 28 H 0.078 0.922 29 H 0.071 0.929 30 H 0.057 0.943 31 H 0.074 0.926 32 H 0.092 0.908 33 H 0.101 0.899 34 H 0.246 0.754 35 H 0.188 0.812 36 H 0.071 0.929 37 H 0.070 0.930 38 H 0.116 0.884 39 H 0.144 0.856 40 H 0.147 0.853 41 H 0.070 0.930 42 H 0.115 0.885 43 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 10.101 -3.893 16.723 19.921 hybrid contribution -0.248 0.938 1.502 1.788 sum 9.853 -2.955 18.225 20.928 Atomic orbital electron populations 1.22308 0.99208 0.99342 1.01820 1.20858 0.91669 0.85556 0.99475 1.43795 1.72595 1.11732 1.01713 1.18781 1.36524 0.94474 0.89088 0.90236 1.25575 0.97629 0.96916 0.96412 1.69847 1.43634 1.06867 1.33349 0.87004 0.82701 0.78883 0.81432 1.21372 1.22490 1.18549 1.21424 0.88880 0.99665 0.91100 1.23418 0.93012 0.77770 0.78925 1.90565 1.61921 1.36645 1.47364 1.44094 1.06074 1.57217 1.24710 1.16940 0.84796 1.00648 0.89276 1.20741 0.89076 1.04643 1.01389 1.18714 0.89833 0.97749 0.86448 1.86145 1.17323 1.86847 1.32212 1.23004 0.80226 1.00735 1.02623 1.20871 0.99948 1.09859 0.91728 1.20671 0.91383 1.05334 0.99463 1.18523 0.89283 1.05592 0.86469 1.86001 1.34812 1.87930 1.14703 1.22961 1.00294 1.00962 0.82077 0.94080 0.93989 0.92238 0.92868 0.94306 0.92633 0.90835 0.89915 0.75363 0.81228 0.92946 0.92975 0.88430 0.85580 0.85285 0.92983 0.88501 0.92998 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.07 10.22 37.16 0.38 -2.69 16 2 C 0.15 3.09 6.39 -4.04 -0.03 3.06 16 3 N -0.58 -13.91 1.51 -174.61 -0.26 -14.17 16 4 C -0.26 -7.35 9.91 -15.06 -0.15 -7.50 16 5 H 0.08 2.50 8.06 -52.49 -0.42 2.08 16 6 C 0.04 1.02 5.34 -17.43 -0.09 0.92 16 7 N -0.90 -27.51 13.97 55.49 0.78 -26.73 16 8 Si 0.87 21.24 24.96 -169.99 -4.24 16.99 16 9 H -0.29 -6.65 6.73 56.52 0.38 -6.27 16 10 H -0.30 -7.42 7.11 56.52 0.40 -7.02 16 11 H -0.26 -6.05 7.11 56.52 0.40 -5.64 16 12 C 0.12 2.56 4.93 -5.19 -0.03 2.53 16 13 C 0.48 10.22 7.73 -10.98 -0.08 10.14 16 14 O -0.49 -12.09 13.44 5.55 0.07 -12.02 16 15 N -0.67 -11.96 5.31 -9.76 -0.05 -12.01 16 16 C 0.18 3.18 6.48 -83.51 -0.54 2.64 16 17 C -0.14 -2.61 8.69 -39.27 -0.34 -2.95 16 18 C 0.12 1.92 6.68 -39.26 -0.26 1.66 16 19 O -0.31 -4.89 10.50 -19.66 -0.21 -5.10 16 20 C 0.03 0.29 9.81 101.05 0.99 1.29 16 21 C -0.20 -2.67 9.03 -39.41 -0.36 -3.03 16 22 C -0.15 -1.87 9.03 -39.48 -0.36 -2.22 16 23 C 0.05 0.70 6.70 -39.09 -0.26 0.44 16 24 O -0.32 -4.09 9.88 -19.91 -0.20 -4.29 16 25 C 0.03 0.26 9.81 101.05 0.99 1.26 16 26 H 0.04 0.63 8.14 -51.93 -0.42 0.20 16 27 H 0.04 0.75 8.14 -51.93 -0.42 0.33 16 28 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 29 H 0.05 1.13 8.07 -51.93 -0.42 0.71 16 30 H 0.04 0.73 8.04 -51.93 -0.42 0.31 16 31 H 0.26 7.63 8.31 -40.82 -0.34 7.29 16 32 H 0.07 1.30 8.07 -51.93 -0.42 0.88 16 33 H 0.08 1.86 3.49 -51.93 -0.18 1.68 16 34 H 0.41 6.12 8.29 -40.82 -0.34 5.78 16 35 H 0.17 3.81 5.59 -52.49 -0.29 3.52 16 36 H 0.05 0.44 7.65 -51.93 -0.40 0.05 16 37 H 0.05 0.45 7.66 -51.93 -0.40 0.05 16 38 H 0.10 0.78 8.14 -51.93 -0.42 0.36 16 39 H 0.13 1.26 6.28 -52.49 -0.33 0.93 16 40 H 0.13 1.19 6.29 -52.49 -0.33 0.86 16 41 H 0.05 0.37 7.65 -51.93 -0.40 -0.03 16 42 H 0.10 0.59 8.14 -51.93 -0.42 0.17 16 43 H 0.05 0.37 7.67 -51.93 -0.40 -0.03 16 LS Contribution 353.13 15.07 5.32 5.32 Total: -1.00 -34.55 353.13 -4.94 -39.48 By element: Atomic # 1 Polarization: 13.00 SS G_CDS: -6.01 Total: 6.99 kcal Atomic # 6 Polarization: 5.67 SS G_CDS: -0.14 Total: 5.54 kcal Atomic # 7 Polarization: -53.38 SS G_CDS: 0.46 Total: -52.92 kcal Atomic # 8 Polarization: -21.07 SS G_CDS: -0.33 Total: -21.40 kcal Atomic # 14 Polarization: 21.24 SS G_CDS: -4.24 Total: 16.99 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -34.55 -4.94 -39.48 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000068958955.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.170 kcal (2) G-P(sol) polarization free energy of solvation -34.545 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.716 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.939 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.484 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.654 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds