Wall clock time and date at job start Tue Mar 31 2020 09:48:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35956 * 117.00308 * 2 1 4 4 C 1.38733 * 119.96542 * 0.02562 * 3 2 1 5 5 C 1.38176 * 120.11005 * 180.02562 * 4 3 2 6 6 C 1.38700 * 120.03603 * 0.22760 * 5 4 3 7 7 N 1.40308 * 120.03597 * 179.74664 * 6 5 4 8 8 C 1.34770 * 119.99646 * 325.54729 * 7 6 5 9 9 O 1.21303 * 120.00530 * 4.14886 * 8 7 6 10 10 C 1.50705 * 119.99865 * 184.15051 * 8 7 6 11 11 H 1.09009 * 109.47083 * 60.00047 * 10 8 7 12 12 C 1.52999 * 109.46984 * 300.00260 * 10 8 7 13 13 N 1.46491 * 109.47215 * 179.97438 * 10 8 7 14 14 C 1.46494 * 120.00353 * 60.00148 * 13 10 8 15 15 C 1.36941 * 119.99988 * 239.99884 * 13 10 8 16 16 H 1.07999 * 120.00146 * 24.87345 * 15 13 10 17 17 C 1.38819 * 120.00091 * 204.86981 * 15 13 10 18 18 N 1.31621 * 119.99815 * 5.74397 * 17 15 13 19 19 Si 1.86795 * 119.99908 * 185.74455 * 17 15 13 20 20 H 1.48497 * 109.47095 * 90.00195 * 19 17 15 21 21 H 1.48496 * 109.46949 * 210.00002 * 19 17 15 22 22 H 1.48505 * 109.47331 * 330.00286 * 19 17 15 23 23 C 1.39293 * 119.92929 * 359.51965 * 6 5 4 24 24 O 1.35969 * 120.05206 * 180.22891 * 23 6 5 25 25 C 1.42899 * 116.99980 * 180.27369 * 24 23 6 26 26 C 1.38512 * 119.89186 * 0.50380 * 23 6 5 27 27 H 1.08995 * 109.46583 * 59.99962 * 1 2 3 28 28 H 1.08994 * 109.47051 * 180.02562 * 1 2 3 29 29 H 1.08998 * 109.46542 * 300.00237 * 1 2 3 30 30 H 1.08000 * 119.94473 * 359.97438 * 4 3 2 31 31 H 1.07992 * 119.98470 * 179.97438 * 5 4 3 32 32 H 0.96998 * 120.00075 * 145.54298 * 7 6 5 33 33 H 1.09005 * 109.47072 * 179.97438 * 12 10 8 34 34 H 1.08996 * 109.47126 * 299.99517 * 12 10 8 35 35 H 1.09003 * 109.47599 * 59.99832 * 12 10 8 36 36 H 1.09006 * 109.47261 * 95.19803 * 14 13 10 37 37 H 1.09001 * 109.47493 * 215.20673 * 14 13 10 38 38 H 1.09005 * 109.47162 * 335.20540 * 14 13 10 39 39 H 0.96995 * 119.99891 * 179.97438 * 18 17 15 40 40 H 1.09001 * 109.47318 * 300.00617 * 25 24 23 41 41 H 1.08997 * 109.47030 * 59.99944 * 25 24 23 42 42 H 1.08997 * 109.47444 * 179.97438 * 25 24 23 43 43 H 1.08003 * 120.01953 * 179.74457 * 26 23 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0463 1.2113 0.0000 4 6 1.2901 2.3744 0.0005 5 6 1.9143 3.6071 0.0000 6 6 3.2992 3.6840 -0.0058 7 7 3.9331 4.9358 -0.0118 8 6 3.3762 5.9699 -0.6726 9 8 2.2909 5.8398 -1.1987 10 6 4.1017 7.2880 -0.7579 11 1 5.0607 7.1434 -1.2555 12 6 4.3360 7.8335 0.6522 13 7 3.2942 8.2413 -1.5229 14 6 1.9536 8.6049 -1.0574 15 6 3.7925 8.7927 -2.6731 16 1 4.5547 8.2731 -3.2348 17 6 3.3180 10.0194 -3.1170 18 7 2.4735 10.7055 -2.3763 19 14 3.8781 10.6964 -4.7654 20 1 2.9532 10.2332 -5.8308 21 1 3.8748 12.1806 -4.7178 22 1 5.2517 10.2136 -5.0580 23 6 4.0601 2.5173 -0.0010 24 8 5.4178 2.5898 -0.0021 25 6 6.1335 1.3529 -0.0030 26 6 3.4312 1.2831 -0.0010 27 1 -0.3632 0.5138 -0.8900 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3632 0.5139 0.8900 30 1 0.2117 2.3163 0.0005 31 1 1.3237 4.5112 0.0000 32 1 4.7720 5.0568 0.4598 33 1 4.8612 8.7866 0.5905 34 1 3.3771 7.9782 1.1498 35 1 4.9371 7.1240 1.2211 36 1 2.0084 9.5234 -0.4731 37 1 1.3001 8.7589 -1.9162 38 1 1.5545 7.8027 -0.4366 39 1 2.1423 11.5628 -2.6863 40 1 5.8714 0.7807 0.8869 41 1 5.8701 0.7814 -0.8930 42 1 7.2049 1.5531 -0.0042 43 1 4.0192 0.3771 -0.0015 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000068972323.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:48:22 Heat of formation + Delta-G solvation = -45.166663 kcal Electronic energy + Delta-G solvation = -25817.317016 eV Core-core repulsion = 22058.094379 eV Total energy + Delta-G solvation = -3759.222637 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 308.157 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.78354 -39.36810 -38.90866 -36.61194 -35.28680 -33.99653 -32.05576 -30.51485 -29.63328 -28.68529 -27.39494 -26.96776 -25.90064 -24.17523 -22.93363 -22.10185 -21.15821 -19.29923 -18.80046 -17.48204 -16.92661 -16.68559 -16.33234 -16.12078 -15.76362 -15.58225 -15.03881 -14.89856 -14.39212 -14.10434 -13.72372 -13.55329 -13.19010 -12.74157 -12.69856 -12.60940 -12.44197 -12.32740 -11.74912 -11.70077 -11.64547 -11.28671 -11.14292 -10.91044 -10.83656 -10.69708 -10.54431 -10.26632 -10.05676 -9.85083 -9.57766 -9.03119 -8.57957 -8.47459 -7.45579 -6.72213 -5.67960 -3.17815 1.35341 1.39084 3.00346 3.20742 3.23490 3.40956 3.46449 3.48026 3.54641 3.84852 4.51756 4.76577 4.89010 4.91885 4.99150 4.99898 5.00772 5.19508 5.27928 5.32162 5.37120 5.43251 5.49005 5.52111 5.70735 5.87595 5.96839 6.01740 6.21412 6.26299 6.39767 6.49716 6.56178 6.85324 6.88656 7.02884 7.15687 7.41860 7.60033 7.80316 7.87600 7.92419 8.42367 8.80400 9.27377 9.86869 10.36049 11.35625 Molecular weight = 308.16amu Principal moments of inertia in cm(-1) A = 0.018787 B = 0.003401 C = 0.003182 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1490.020722 B = 8230.383562 C = 8797.832375 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.320 6.320 3 C 0.139 3.861 4 C -0.222 4.222 5 C -0.049 4.049 6 C 0.099 3.901 7 N -0.674 5.674 8 C 0.491 3.509 9 O -0.511 6.511 10 C 0.162 3.838 11 H 0.091 0.909 12 C -0.155 4.155 13 N -0.572 5.572 14 C 0.171 3.829 15 C -0.259 4.259 16 H 0.067 0.933 17 C 0.007 3.993 18 N -0.905 5.905 19 Si 0.909 3.091 20 H -0.288 1.288 21 H -0.290 1.290 22 H -0.279 1.279 23 C 0.132 3.868 24 O -0.311 6.311 25 C 0.028 3.972 26 C -0.225 4.225 27 H 0.057 0.943 28 H 0.097 0.903 29 H 0.056 0.944 30 H 0.130 0.870 31 H 0.152 0.848 32 H 0.408 0.592 33 H 0.069 0.931 34 H 0.053 0.947 35 H 0.044 0.956 36 H 0.027 0.973 37 H 0.042 0.958 38 H 0.004 0.996 39 H 0.252 0.748 40 H 0.055 0.945 41 H 0.055 0.945 42 H 0.100 0.900 43 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.547 -20.268 9.105 22.365 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.234 6.234 3 C 0.093 3.907 4 C -0.241 4.241 5 C -0.070 4.070 6 C 0.003 3.997 7 N -0.322 5.322 8 C 0.278 3.722 9 O -0.384 6.384 10 C 0.048 3.952 11 H 0.109 0.891 12 C -0.215 4.215 13 N -0.292 5.292 14 C 0.027 3.973 15 C -0.388 4.388 16 H 0.085 0.915 17 C -0.192 4.192 18 N -0.550 5.550 19 Si 0.739 3.261 20 H -0.215 1.215 21 H -0.216 1.216 22 H -0.204 1.204 23 C 0.084 3.916 24 O -0.224 6.224 25 C -0.067 4.067 26 C -0.245 4.245 27 H 0.075 0.925 28 H 0.115 0.885 29 H 0.074 0.926 30 H 0.148 0.852 31 H 0.169 0.831 32 H 0.244 0.756 33 H 0.088 0.912 34 H 0.072 0.928 35 H 0.063 0.937 36 H 0.045 0.955 37 H 0.061 0.939 38 H 0.022 0.978 39 H 0.063 0.937 40 H 0.074 0.926 41 H 0.074 0.926 42 H 0.118 0.882 43 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges 1.876 -20.078 8.617 21.929 hybrid contribution 0.354 0.176 -0.746 0.844 sum 2.230 -19.902 7.871 21.518 Atomic orbital electron populations 1.23042 0.78358 1.03642 1.01669 1.86016 1.21403 1.27033 1.88949 1.18591 0.91428 0.84117 0.96564 1.21071 1.00114 0.91603 1.11343 1.21042 0.92270 0.98486 0.95167 1.17137 0.91074 0.83688 1.07766 1.43884 1.26812 1.07848 1.53612 1.23140 0.86987 0.86261 0.75855 1.90607 1.20734 1.82623 1.44421 1.20239 0.94704 0.86470 0.93822 0.89075 1.22247 1.01435 1.01547 0.96230 1.43650 1.13361 1.46687 1.25532 1.20763 0.84534 0.94479 0.97492 1.19221 1.20732 0.99644 0.99196 0.91488 1.25063 0.99387 0.95975 0.98737 1.70084 1.34373 1.13923 1.36598 0.86190 0.78412 0.77969 0.83545 1.21457 1.21644 1.20441 1.18449 0.82442 0.92120 0.98555 1.86070 1.14912 1.32593 1.88863 1.23055 0.96711 0.85485 1.01420 1.20086 0.92561 0.96764 1.15100 0.92472 0.88452 0.92571 0.85196 0.83084 0.75629 0.91239 0.92795 0.93714 0.95497 0.93916 0.97799 0.93728 0.92636 0.92590 0.88179 0.84612 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.22 9.81 101.05 0.99 1.21 16 2 O -0.32 -3.75 10.50 -19.60 -0.21 -3.95 16 3 C 0.14 1.82 6.68 -39.24 -0.26 1.56 16 4 C -0.22 -3.02 9.03 -39.42 -0.36 -3.37 16 5 C -0.05 -0.79 8.70 -39.43 -0.34 -1.13 16 6 C 0.10 1.57 6.33 -83.41 -0.53 1.04 16 7 N -0.67 -10.78 5.12 -9.71 -0.05 -10.83 16 8 C 0.49 9.75 6.70 -10.99 -0.07 9.67 16 9 O -0.51 -11.91 12.02 5.54 0.07 -11.84 16 10 C 0.16 3.33 3.13 -69.09 -0.22 3.11 16 11 H 0.09 1.79 7.88 -51.92 -0.41 1.38 16 12 C -0.15 -2.68 9.09 37.16 0.34 -2.34 16 13 N -0.57 -14.85 2.59 -174.81 -0.45 -15.30 16 14 C 0.17 4.53 7.44 59.84 0.45 4.97 16 15 C -0.26 -7.28 9.59 -15.05 -0.14 -7.42 16 16 H 0.07 1.84 7.81 -52.49 -0.41 1.43 16 17 C 0.01 0.20 5.24 -17.43 -0.09 0.10 16 18 N -0.91 -26.76 10.45 55.49 0.58 -26.18 16 19 Si 0.91 22.25 29.56 -169.99 -5.02 17.22 16 20 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 21 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 22 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 23 C 0.13 1.83 6.70 -39.09 -0.26 1.57 16 24 O -0.31 -3.82 10.04 -19.64 -0.20 -4.02 16 25 C 0.03 0.23 9.81 101.05 0.99 1.22 16 26 C -0.23 -2.87 8.97 -39.32 -0.35 -3.22 16 27 H 0.06 0.44 7.66 -51.93 -0.40 0.05 16 28 H 0.10 0.54 8.14 -51.93 -0.42 0.12 16 29 H 0.06 0.40 7.66 -51.93 -0.40 0.00 16 30 H 0.13 1.48 6.28 -52.49 -0.33 1.15 16 31 H 0.15 2.68 6.19 -52.49 -0.32 2.35 16 32 H 0.41 5.45 7.86 -40.82 -0.32 5.13 16 33 H 0.07 1.27 8.14 -51.93 -0.42 0.85 16 34 H 0.05 0.97 7.67 -51.93 -0.40 0.57 16 35 H 0.04 0.59 7.48 -51.93 -0.39 0.21 16 36 H 0.03 0.74 7.33 -51.93 -0.38 0.36 16 37 H 0.04 1.24 7.27 -51.93 -0.38 0.86 16 38 H 0.00 0.09 6.43 -51.93 -0.33 -0.25 16 39 H 0.25 7.22 8.31 -40.82 -0.34 6.88 16 40 H 0.06 0.38 7.66 -51.93 -0.40 -0.02 16 41 H 0.06 0.42 7.66 -51.93 -0.40 0.02 16 42 H 0.10 0.59 8.14 -51.93 -0.42 0.17 16 43 H 0.14 1.43 6.30 -52.48 -0.33 1.10 16 LS Contribution 350.69 15.07 5.28 5.28 Total: -1.00 -34.07 350.69 -5.86 -39.93 By element: Atomic # 1 Polarization: 8.73 SS G_CDS: -6.00 Total: 2.73 kcal Atomic # 6 Polarization: 6.84 SS G_CDS: 0.14 Total: 6.97 kcal Atomic # 7 Polarization: -52.40 SS G_CDS: 0.08 Total: -52.32 kcal Atomic # 8 Polarization: -19.48 SS G_CDS: -0.34 Total: -19.82 kcal Atomic # 14 Polarization: 22.25 SS G_CDS: -5.02 Total: 17.22 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -34.07 -5.86 -39.93 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000068972323.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.240 kcal (2) G-P(sol) polarization free energy of solvation -34.068 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.308 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.859 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.927 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.167 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds