Wall clock time and date at job start Tue Mar 31 2020 09:48:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35964 * 116.99509 * 2 1 4 4 C 1.38729 * 119.96858 * 359.97438 * 3 2 1 5 5 C 1.38179 * 120.10458 * 180.02562 * 4 3 2 6 6 C 1.38695 * 120.04000 * 0.03018 * 5 4 3 7 7 N 1.40302 * 120.03565 * 179.97438 * 6 5 4 8 8 C 1.34776 * 119.99643 * 332.65576 * 7 6 5 9 9 O 1.21298 * 120.00505 * 4.80718 * 8 7 6 10 10 C 1.50703 * 119.99718 * 184.81032 * 8 7 6 11 11 H 1.09010 * 109.47036 * 299.99593 * 10 8 7 12 12 C 1.53000 * 109.47389 * 59.99724 * 10 8 7 13 13 N 1.46503 * 109.47261 * 180.02562 * 10 8 7 14 14 C 1.46501 * 119.99374 * 299.99242 * 13 10 8 15 15 C 1.36932 * 120.00379 * 120.00108 * 13 10 8 16 16 H 1.07996 * 119.99928 * 18.95703 * 15 13 10 17 17 C 1.38806 * 119.99796 * 198.96648 * 15 13 10 18 18 N 1.31626 * 120.00483 * 16.94006 * 17 15 13 19 19 Si 1.86807 * 120.00028 * 196.94963 * 17 15 13 20 20 H 1.48493 * 109.47273 * 94.97947 * 19 17 15 21 21 H 1.48496 * 109.47175 * 214.98315 * 19 17 15 22 22 H 1.48508 * 109.46761 * 334.97852 * 19 17 15 23 23 C 1.39288 * 119.93098 * 359.97438 * 6 5 4 24 24 O 1.35967 * 120.05318 * 180.02562 * 23 6 5 25 25 C 1.42908 * 116.99873 * 180.02562 * 24 23 6 26 26 C 1.38522 * 119.89239 * 0.27993 * 23 6 5 27 27 H 1.09005 * 109.47296 * 60.00681 * 1 2 3 28 28 H 1.09005 * 109.46964 * 179.97438 * 1 2 3 29 29 H 1.08996 * 109.47720 * 300.00404 * 1 2 3 30 30 H 1.07995 * 119.94628 * 0.02562 * 4 3 2 31 31 H 1.07997 * 119.97689 * 180.02562 * 5 4 3 32 32 H 0.96998 * 120.00188 * 152.65265 * 7 6 5 33 33 H 1.08998 * 109.46856 * 60.00235 * 12 10 8 34 34 H 1.08999 * 109.47099 * 179.97438 * 12 10 8 35 35 H 1.09000 * 109.46984 * 299.99831 * 12 10 8 36 36 H 1.09008 * 109.46537 * 94.72941 * 14 13 10 37 37 H 1.08995 * 109.47418 * 214.72095 * 14 13 10 38 38 H 1.09000 * 109.47293 * 334.73125 * 14 13 10 39 39 H 0.96994 * 120.00331 * 180.02562 * 18 17 15 40 40 H 1.08999 * 109.46909 * 180.02562 * 25 24 23 41 41 H 1.08997 * 109.46934 * 299.99993 * 25 24 23 42 42 H 1.09002 * 109.46783 * 60.00183 * 25 24 23 43 43 H 1.08003 * 120.01586 * 179.72510 * 26 23 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0461 1.2115 0.0000 4 6 1.2898 2.3745 -0.0005 5 6 1.9141 3.6072 -0.0011 6 6 3.2989 3.6842 -0.0017 7 7 3.9327 4.9359 -0.0028 8 6 3.3119 6.0050 -0.5394 9 8 2.1721 5.9056 -0.9423 10 6 4.0338 7.3241 -0.6388 11 1 4.3189 7.6584 0.3588 12 6 5.2885 7.1554 -1.4981 13 7 3.1509 8.3190 -1.2529 14 6 2.6275 8.0994 -2.6034 15 6 2.8151 9.4541 -0.5646 16 1 3.4146 9.7739 0.2749 17 6 1.7040 10.1937 -0.9457 18 7 0.7920 9.6559 -1.7277 19 14 1.5030 11.9524 -0.3488 20 1 2.0354 12.8866 -1.3730 21 1 0.0634 12.2362 -0.1206 22 1 2.2505 12.1324 0.9217 23 6 4.0598 2.5175 -0.0013 24 8 5.4176 2.5901 -0.0014 25 6 6.1334 1.3531 -0.0015 26 6 3.4311 1.2832 -0.0061 27 1 -0.3634 0.5137 -0.8901 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5139 0.8899 30 1 0.2115 2.3163 -0.0005 31 1 1.3233 4.5113 -0.0011 32 1 4.8176 5.0318 0.3827 33 1 5.0033 6.8212 -2.4956 34 1 5.8103 8.1096 -1.5704 35 1 5.9452 6.4154 -1.0408 36 1 1.6415 7.6388 -2.5405 37 1 2.5497 9.0545 -3.1227 38 1 3.3016 7.4414 -3.1519 39 1 0.0158 10.1728 -1.9943 40 1 7.2048 1.5534 -0.0011 41 1 5.8707 0.7813 0.8885 42 1 5.8705 0.7814 -0.8915 43 1 4.0191 0.3773 -0.0102 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000068972324.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:48:26 Heat of formation + Delta-G solvation = -41.129163 kcal Electronic energy + Delta-G solvation = -25923.543143 eV Core-core repulsion = 22164.495585 eV Total energy + Delta-G solvation = -3759.047558 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 308.157 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -40.71742 -39.28948 -38.84869 -36.54076 -35.28854 -33.91883 -32.09530 -30.42197 -29.58956 -28.66494 -27.34250 -26.90533 -25.93727 -24.18524 -22.87424 -22.05216 -21.12254 -19.24250 -18.73182 -17.43050 -16.98652 -16.57523 -16.24974 -16.03737 -15.61043 -15.51054 -15.05494 -14.86423 -14.51831 -13.94807 -13.63743 -13.51053 -13.07181 -12.89162 -12.65870 -12.54409 -12.34804 -12.21175 -11.77250 -11.69962 -11.66419 -11.37590 -11.12596 -10.81365 -10.78028 -10.72065 -10.54638 -10.35404 -9.94252 -9.80785 -9.62124 -8.93032 -8.52451 -8.39850 -7.31912 -6.76997 -5.68196 -3.12719 1.43385 1.48940 3.06160 3.26409 3.33196 3.39939 3.46098 3.48636 3.62047 3.94526 4.50879 4.84303 4.92623 4.98312 5.02407 5.06245 5.08158 5.25028 5.33582 5.34266 5.41201 5.43793 5.51786 5.58757 5.76668 5.89122 5.96333 6.03065 6.23130 6.30597 6.48585 6.51836 6.64533 6.71677 6.94582 6.98563 7.22171 7.49165 7.50004 7.79828 7.93941 8.04970 8.38047 8.90378 9.24216 9.87116 10.34818 11.34792 Molecular weight = 308.16amu Principal moments of inertia in cm(-1) A = 0.018715 B = 0.003608 C = 0.003161 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1495.750331 B = 7758.978393 C = 8855.168286 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.322 6.322 3 C 0.133 3.867 4 C -0.219 4.219 5 C -0.062 4.062 6 C 0.102 3.898 7 N -0.674 5.674 8 C 0.484 3.516 9 O -0.499 6.499 10 C 0.158 3.842 11 H 0.089 0.911 12 C -0.156 4.156 13 N -0.569 5.569 14 C 0.166 3.834 15 C -0.266 4.266 16 H 0.072 0.928 17 C 0.007 3.993 18 N -0.892 5.892 19 Si 0.905 3.095 20 H -0.288 1.288 21 H -0.292 1.292 22 H -0.279 1.279 23 C 0.124 3.876 24 O -0.313 6.313 25 C 0.029 3.971 26 C -0.223 4.223 27 H 0.056 0.944 28 H 0.096 0.904 29 H 0.056 0.944 30 H 0.130 0.870 31 H 0.165 0.835 32 H 0.407 0.593 33 H 0.054 0.946 34 H 0.066 0.934 35 H 0.049 0.951 36 H 0.042 0.958 37 H 0.041 0.959 38 H -0.004 1.004 39 H 0.252 0.748 40 H 0.099 0.901 41 H 0.054 0.946 42 H 0.055 0.945 43 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.488 -18.704 3.967 20.534 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.235 6.235 3 C 0.087 3.913 4 C -0.238 4.238 5 C -0.082 4.082 6 C 0.006 3.994 7 N -0.321 5.321 8 C 0.270 3.730 9 O -0.371 6.371 10 C 0.045 3.955 11 H 0.107 0.893 12 C -0.215 4.215 13 N -0.289 5.289 14 C 0.022 3.978 15 C -0.395 4.395 16 H 0.090 0.910 17 C -0.193 4.193 18 N -0.535 5.535 19 Si 0.735 3.265 20 H -0.215 1.215 21 H -0.218 1.218 22 H -0.204 1.204 23 C 0.077 3.923 24 O -0.227 6.227 25 C -0.066 4.066 26 C -0.243 4.243 27 H 0.075 0.925 28 H 0.115 0.885 29 H 0.074 0.926 30 H 0.147 0.853 31 H 0.182 0.818 32 H 0.242 0.758 33 H 0.073 0.927 34 H 0.085 0.915 35 H 0.068 0.932 36 H 0.061 0.939 37 H 0.060 0.940 38 H 0.014 0.986 39 H 0.063 0.937 40 H 0.117 0.883 41 H 0.073 0.927 42 H 0.074 0.926 43 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 6.684 -18.575 3.536 20.055 hybrid contribution -0.134 0.579 0.488 0.769 sum 6.550 -17.997 4.024 19.570 Atomic orbital electron populations 1.23031 0.78428 1.03542 1.01691 1.86005 1.21343 1.27100 1.89073 1.18602 0.91437 0.84108 0.97139 1.21127 1.00129 0.91642 1.10921 1.21444 0.92437 0.99115 0.95215 1.17256 0.91209 0.83698 1.07188 1.44077 1.21269 1.06347 1.60412 1.23496 0.88006 0.85957 0.75521 1.90592 1.17569 1.83297 1.45666 1.20505 0.91309 0.85757 0.97978 0.89281 1.22206 0.97030 1.01615 1.00652 1.43919 1.54630 1.17144 1.13173 1.20808 0.96002 0.97744 0.83243 1.19262 1.07545 0.98593 1.14093 0.90974 1.25012 0.95100 0.99205 0.99993 1.70177 1.09805 1.34929 1.38614 0.86236 0.76959 0.84964 0.78341 1.21465 1.21817 1.20400 1.18378 0.82308 0.92109 0.99520 1.86042 1.15003 1.32524 1.89087 1.23034 0.96607 0.85552 1.01394 1.20055 0.92529 0.96667 1.15078 0.92509 0.88523 0.92581 0.85256 0.81802 0.75800 0.92704 0.91530 0.93198 0.93929 0.94023 0.98579 0.93736 0.88286 0.92696 0.92650 0.84740 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.25 9.81 101.05 0.99 1.24 16 2 O -0.32 -3.99 10.50 -19.63 -0.21 -4.20 16 3 C 0.13 1.85 6.68 -39.24 -0.26 1.59 16 4 C -0.22 -3.23 9.03 -39.42 -0.36 -3.59 16 5 C -0.06 -1.07 8.78 -39.43 -0.35 -1.42 16 6 C 0.10 1.70 6.45 -83.42 -0.54 1.17 16 7 N -0.67 -11.18 5.13 -9.71 -0.05 -11.23 16 8 C 0.48 9.92 6.94 -10.98 -0.08 9.84 16 9 O -0.50 -12.23 11.84 5.54 0.07 -12.17 16 10 C 0.16 3.23 3.12 -69.08 -0.22 3.01 16 11 H 0.09 1.70 7.84 -51.92 -0.41 1.30 16 12 C -0.16 -2.59 9.08 37.16 0.34 -2.25 16 13 N -0.57 -14.56 2.59 -174.81 -0.45 -15.02 16 14 C 0.17 4.36 7.64 59.85 0.46 4.82 16 15 C -0.27 -7.34 9.62 -15.06 -0.14 -7.49 16 16 H 0.07 1.90 7.81 -52.49 -0.41 1.49 16 17 C 0.01 0.19 5.02 -17.43 -0.09 0.10 16 18 N -0.89 -26.79 10.71 55.49 0.59 -26.20 16 19 Si 0.91 21.95 29.59 -169.99 -5.03 16.92 16 20 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 21 H -0.29 -7.18 7.11 56.52 0.40 -6.77 16 22 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 23 C 0.12 1.78 6.70 -39.09 -0.26 1.52 16 24 O -0.31 -3.87 9.94 -19.64 -0.20 -4.06 16 25 C 0.03 0.24 9.81 101.05 0.99 1.23 16 26 C -0.22 -2.97 8.97 -39.31 -0.35 -3.33 16 27 H 0.06 0.49 7.66 -51.93 -0.40 0.09 16 28 H 0.10 0.60 8.14 -51.93 -0.42 0.18 16 29 H 0.06 0.46 7.66 -51.93 -0.40 0.06 16 30 H 0.13 1.65 6.28 -52.49 -0.33 1.32 16 31 H 0.16 3.29 5.62 -52.49 -0.30 3.00 16 32 H 0.41 5.60 7.97 -40.82 -0.33 5.28 16 33 H 0.05 0.97 6.67 -51.93 -0.35 0.62 16 34 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 35 H 0.05 0.66 7.68 -51.93 -0.40 0.26 16 36 H 0.04 1.25 6.75 -51.92 -0.35 0.90 16 37 H 0.04 1.15 7.14 -51.93 -0.37 0.78 16 38 H 0.00 -0.10 6.44 -51.93 -0.33 -0.44 16 39 H 0.25 7.32 8.31 -40.82 -0.34 6.98 16 40 H 0.10 0.58 8.14 -51.93 -0.42 0.15 16 41 H 0.05 0.39 7.67 -51.93 -0.40 -0.01 16 42 H 0.05 0.42 7.65 -51.93 -0.40 0.02 16 43 H 0.13 1.48 6.30 -52.48 -0.33 1.15 16 LS Contribution 349.14 15.07 5.26 5.26 Total: -1.00 -34.13 349.14 -5.77 -39.89 By element: Atomic # 1 Polarization: 10.24 SS G_CDS: -5.89 Total: 4.34 kcal Atomic # 6 Polarization: 6.32 SS G_CDS: 0.14 Total: 6.45 kcal Atomic # 7 Polarization: -52.53 SS G_CDS: 0.09 Total: -52.44 kcal Atomic # 8 Polarization: -20.10 SS G_CDS: -0.34 Total: -20.43 kcal Atomic # 14 Polarization: 21.95 SS G_CDS: -5.03 Total: 16.92 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -34.13 -5.77 -39.89 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000068972324.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.235 kcal (2) G-P(sol) polarization free energy of solvation -34.126 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.361 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.768 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.894 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.129 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds