Wall clock time and date at job start Tue Mar 31 2020 10:38:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 O 1.42898 * 109.47558 * 2 1 4 4 C 1.42897 * 114.00270 * 179.97438 * 3 2 1 5 5 C 1.53004 * 109.46897 * 180.02562 * 4 3 2 6 6 N 1.46501 * 109.46843 * 65.01107 * 5 4 3 7 7 C 1.34778 * 119.99866 * 180.02562 * 6 5 4 8 8 O 1.21584 * 119.99654 * 359.97438 * 7 6 5 9 9 N 1.34769 * 119.99808 * 179.97438 * 7 6 5 10 10 C 1.46508 * 120.00011 * 179.97438 * 9 7 6 11 11 C 1.50695 * 109.47103 * 179.97438 * 10 9 7 12 12 C 1.38299 * 119.93247 * 90.00118 * 11 10 9 13 13 C 1.38101 * 120.07425 * 179.97438 * 12 11 10 14 14 C 1.38886 * 119.92536 * 0.02562 * 13 12 11 15 15 O 1.35750 * 120.06440 * 180.02562 * 14 13 12 16 16 C 1.34828 * 117.00075 * 5.53777 * 15 14 13 17 17 H 1.07993 * 120.00518 * 354.94289 * 16 15 14 18 18 C 1.38663 * 119.99751 * 174.94575 * 16 15 14 19 19 N 1.31556 * 120.00220 * 359.97438 * 18 16 15 20 20 Si 1.86795 * 119.99821 * 180.02562 * 18 16 15 21 21 H 1.48499 * 109.47264 * 359.97438 * 20 18 16 22 22 H 1.48494 * 109.47375 * 119.99795 * 20 18 16 23 23 H 1.48506 * 109.47301 * 239.99793 * 20 18 16 24 24 C 1.38874 * 119.86623 * 0.27854 * 14 13 12 25 25 C 1.38106 * 119.92542 * 359.44577 * 24 14 13 26 26 H 1.09001 * 109.47248 * 59.99277 * 1 2 3 27 27 H 1.09002 * 109.47390 * 179.97438 * 1 2 3 28 28 H 1.09001 * 109.47173 * 299.99602 * 1 2 3 29 29 H 1.09009 * 109.46952 * 240.00593 * 2 1 3 30 30 H 1.09001 * 109.47248 * 120.00723 * 2 1 3 31 31 H 1.09005 * 109.46903 * 60.00947 * 4 3 2 32 32 H 1.08994 * 109.47607 * 300.00915 * 4 3 2 33 33 H 1.08994 * 109.47328 * 305.00327 * 5 4 3 34 34 H 1.09002 * 109.46440 * 185.00219 * 5 4 3 35 35 H 0.96996 * 120.00042 * 359.97438 * 6 5 4 36 36 H 0.97001 * 120.00514 * 359.97438 * 9 7 6 37 37 H 1.08998 * 109.46632 * 59.99915 * 10 9 7 38 38 H 1.08996 * 109.47144 * 299.99646 * 10 9 7 39 39 H 1.07999 * 119.96503 * 0.02562 * 12 11 10 40 40 H 1.07992 * 120.03608 * 180.02562 * 13 12 11 41 41 H 0.96996 * 120.00178 * 179.97438 * 19 18 16 42 42 H 1.07996 * 120.03745 * 179.72497 * 24 14 13 43 43 H 1.07997 * 119.96326 * 180.27708 * 25 24 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 3.4309 1.4600 0.0006 5 6 3.8254 2.9383 0.0012 6 7 3.3870 3.5601 1.2531 7 6 3.6276 4.8673 1.4767 8 8 4.2089 5.5302 0.6394 9 7 3.2239 5.4395 2.6281 10 6 3.4859 6.8603 2.8714 11 6 2.9370 7.2485 4.2201 12 6 3.7346 7.1460 5.3452 13 6 3.2348 7.5016 6.5825 14 6 1.9294 7.9619 6.6963 15 8 1.4354 8.3127 7.9110 16 6 2.2961 8.3004 8.9487 17 1 3.3053 7.9422 8.8090 18 6 1.8856 8.7476 10.1954 19 7 0.6564 9.1843 10.3656 20 14 3.0783 8.7312 11.6328 21 1 4.3890 8.1978 11.1825 22 1 3.2556 10.1137 12.1448 23 1 2.5385 7.8683 12.7143 24 6 1.1289 8.0578 5.5655 25 6 1.6365 7.7061 4.3302 26 1 -0.3634 0.5139 -0.8899 27 1 -0.3634 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 1.8933 -0.5138 -0.8901 30 1 1.8933 -0.5139 0.8899 31 1 3.8340 0.9764 -0.8893 32 1 3.8334 0.9765 0.8906 33 1 3.3499 3.4416 -0.8406 34 1 4.9083 3.0253 -0.0880 35 1 2.9230 3.0313 1.9209 36 1 2.7599 4.9106 3.2959 37 1 3.0026 7.4564 2.0974 38 1 4.5607 7.0403 2.8507 39 1 4.7497 6.7883 5.2561 40 1 3.8583 7.4217 7.4607 41 1 0.3691 9.4968 11.2377 42 1 0.1120 8.4112 5.6514 43 1 1.0160 7.7846 3.4498 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000069277591.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:38:30 Heat of formation + Delta-G solvation = -85.988084 kcal Electronic energy + Delta-G solvation = -23868.690383 eV Core-core repulsion = 20107.697597 eV Total energy + Delta-G solvation = -3760.992787 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 308.157 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -39.98107 -39.09092 -38.45654 -36.89348 -34.98742 -34.26359 -32.37558 -31.84901 -30.29176 -30.10067 -28.70116 -25.83514 -24.66026 -23.19749 -22.78970 -22.03589 -20.91759 -20.59432 -18.47129 -18.05106 -17.31248 -17.03431 -16.78250 -16.06509 -15.50114 -14.91404 -14.78092 -14.67531 -14.46648 -14.28050 -13.81237 -13.70580 -13.61539 -13.42141 -13.23715 -12.81308 -12.76884 -12.50081 -12.05166 -12.02598 -11.76257 -11.66764 -11.45028 -11.38718 -10.96767 -10.75216 -10.67257 -10.47148 -10.19333 -10.03041 -9.41489 -9.26786 -8.91198 -8.70625 -8.26719 -7.31681 -6.52554 -4.11311 2.04933 2.14677 2.88271 3.08621 3.10044 3.15374 3.20410 3.32261 3.90689 4.29435 4.50885 4.59028 4.62995 4.77618 4.82278 4.94787 4.96066 5.02192 5.18110 5.18387 5.27285 5.45022 5.47851 5.50068 5.58476 5.69231 5.74630 5.84764 5.97134 6.13782 6.37242 6.38467 6.60640 6.65136 6.75373 6.82067 6.92680 7.02290 7.17799 7.29683 7.36417 7.73107 7.92419 8.09926 8.67982 8.92975 9.61560 10.65121 Molecular weight = 308.16amu Principal moments of inertia in cm(-1) A = 0.018159 B = 0.002177 C = 0.002079 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1541.580452 B =12859.797081 C =13464.070804 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.057 3.943 3 O -0.386 6.386 4 C 0.050 3.950 5 C 0.143 3.857 6 N -0.746 5.746 7 C 0.701 3.299 8 O -0.600 6.600 9 N -0.738 5.738 10 C 0.198 3.802 11 C -0.213 4.213 12 C -0.050 4.050 13 C -0.237 4.237 14 C 0.160 3.840 15 O -0.174 6.174 16 C -0.393 4.393 17 H 0.094 0.906 18 C 0.039 3.961 19 N -0.860 5.860 20 Si 0.942 3.058 21 H -0.266 1.266 22 H -0.275 1.275 23 H -0.275 1.275 24 C -0.196 4.196 25 C -0.053 4.053 26 H 0.063 0.937 27 H 0.070 0.930 28 H 0.064 0.936 29 H 0.048 0.952 30 H 0.048 0.952 31 H 0.066 0.934 32 H 0.056 0.944 33 H 0.073 0.927 34 H 0.080 0.920 35 H 0.398 0.602 36 H 0.397 0.603 37 H 0.064 0.936 38 H 0.064 0.936 39 H 0.108 0.892 40 H 0.128 0.872 41 H 0.271 0.729 42 H 0.118 0.882 43 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.826 -16.663 -16.834 23.993 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.020 4.020 3 O -0.305 6.305 4 C -0.027 4.027 5 C 0.019 3.981 6 N -0.402 5.402 7 C 0.401 3.599 8 O -0.479 6.479 9 N -0.393 5.393 10 C 0.075 3.925 11 C -0.215 4.215 12 C -0.069 4.069 13 C -0.257 4.257 14 C 0.106 3.894 15 O -0.077 6.077 16 C -0.469 4.469 17 H 0.111 0.889 18 C -0.165 4.165 19 N -0.494 5.494 20 Si 0.767 3.233 21 H -0.191 1.191 22 H -0.201 1.201 23 H -0.201 1.201 24 C -0.215 4.215 25 C -0.072 4.072 26 H 0.082 0.918 27 H 0.089 0.911 28 H 0.084 0.916 29 H 0.066 0.934 30 H 0.067 0.933 31 H 0.084 0.916 32 H 0.075 0.925 33 H 0.092 0.908 34 H 0.098 0.902 35 H 0.232 0.768 36 H 0.231 0.769 37 H 0.083 0.917 38 H 0.082 0.918 39 H 0.126 0.874 40 H 0.146 0.854 41 H 0.081 0.919 42 H 0.136 0.864 43 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges 3.880 -15.701 -17.341 23.713 hybrid contribution 0.347 -0.798 1.421 1.666 sum 4.227 -16.499 -15.920 23.314 Atomic orbital electron populations 1.21750 0.93578 1.02290 1.03385 1.22479 0.95808 0.83619 1.00050 1.87964 1.20589 1.26557 1.95435 1.22790 0.82077 0.96609 1.01270 1.21162 0.99709 0.90369 0.86907 1.45018 1.64407 1.09360 1.21460 1.16006 0.79675 0.81531 0.82670 1.90902 1.48024 1.62755 1.46192 1.45489 1.62901 1.12088 1.18793 1.19820 0.99731 0.79103 0.93846 1.19235 0.95894 1.12424 0.93902 1.20649 0.98060 0.96448 0.91764 1.21161 0.96978 1.09417 0.98122 1.19443 0.91639 0.91543 0.86801 1.83978 1.37329 1.73979 1.12388 1.21404 0.94723 1.44310 0.86439 0.88874 1.25324 0.97137 0.95933 0.98143 1.70044 1.16262 1.38752 1.24335 0.85626 0.79341 0.78417 0.79929 1.19052 1.20065 1.20098 1.20217 1.00535 1.10111 0.90624 1.20549 0.94167 0.96461 0.96048 0.91811 0.91096 0.91645 0.93417 0.93324 0.91602 0.92536 0.90844 0.90178 0.76786 0.76902 0.91744 0.91795 0.87390 0.85441 0.91944 0.86385 0.86918 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.90 10.28 37.16 0.38 -0.52 16 2 C 0.06 0.35 6.66 37.16 0.25 0.60 16 3 O -0.39 -3.28 10.29 -35.23 -0.36 -3.65 16 4 C 0.05 0.33 6.07 37.16 0.23 0.55 16 5 C 0.14 1.29 6.06 -4.04 -0.02 1.26 16 6 N -0.75 -7.85 5.51 -65.23 -0.36 -8.21 16 7 C 0.70 9.88 8.57 -86.92 -0.74 9.14 16 8 O -0.60 -10.73 16.34 5.29 0.09 -10.64 16 9 N -0.74 -9.68 5.55 -66.42 -0.37 -10.05 16 10 C 0.20 2.88 5.80 -5.19 -0.03 2.85 16 11 C -0.21 -3.46 5.25 -104.58 -0.55 -4.01 16 12 C -0.05 -0.88 9.69 -39.61 -0.38 -1.26 16 13 C -0.24 -4.94 9.17 -39.39 -0.36 -5.30 16 14 C 0.16 3.74 6.65 -39.11 -0.26 3.48 16 15 O -0.17 -4.84 9.76 0.05 0.00 -4.84 16 16 C -0.39 -10.70 9.49 30.89 0.29 -10.40 16 17 H 0.09 2.35 5.20 -52.49 -0.27 2.07 16 18 C 0.04 1.06 5.49 -17.51 -0.10 0.96 16 19 N -0.86 -24.73 13.67 55.48 0.76 -23.97 16 20 Si 0.94 20.08 29.55 -169.99 -5.02 15.06 16 21 H -0.27 -5.43 7.11 56.52 0.40 -5.03 16 22 H -0.28 -5.77 7.11 56.52 0.40 -5.37 16 23 H -0.28 -5.75 7.11 56.52 0.40 -5.34 16 24 C -0.20 -3.97 9.99 -39.39 -0.39 -4.36 16 25 C -0.05 -0.91 9.69 -39.61 -0.38 -1.29 16 26 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 27 H 0.07 0.30 8.14 -51.93 -0.42 -0.12 16 28 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 29 H 0.05 0.24 8.14 -51.92 -0.42 -0.18 16 30 H 0.05 0.26 8.14 -51.93 -0.42 -0.17 16 31 H 0.07 0.32 8.14 -51.93 -0.42 -0.10 16 32 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 33 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 34 H 0.08 0.70 8.14 -51.93 -0.42 0.27 16 35 H 0.40 3.44 8.49 -40.82 -0.35 3.10 16 36 H 0.40 4.59 8.48 -40.82 -0.35 4.25 16 37 H 0.06 0.96 8.08 -51.93 -0.42 0.54 16 38 H 0.06 0.95 8.08 -51.93 -0.42 0.53 16 39 H 0.11 1.64 8.06 -52.49 -0.42 1.22 16 40 H 0.13 2.67 5.64 -52.49 -0.30 2.37 16 41 H 0.27 7.11 8.31 -40.82 -0.34 6.77 16 42 H 0.12 2.32 8.06 -52.49 -0.42 1.90 16 43 H 0.11 1.65 8.06 -52.49 -0.42 1.23 16 LS Contribution 370.59 15.07 5.58 5.58 Total: -1.00 -32.79 370.59 -8.07 -40.86 By element: Atomic # 1 Polarization: 14.47 SS G_CDS: -6.31 Total: 8.16 kcal Atomic # 6 Polarization: -6.23 SS G_CDS: -2.08 Total: -8.30 kcal Atomic # 7 Polarization: -42.26 SS G_CDS: 0.03 Total: -42.23 kcal Atomic # 8 Polarization: -18.85 SS G_CDS: -0.28 Total: -19.13 kcal Atomic # 14 Polarization: 20.08 SS G_CDS: -5.02 Total: 15.06 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -32.79 -8.07 -40.86 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000069277591.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.128 kcal (2) G-P(sol) polarization free energy of solvation -32.788 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.916 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.072 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.860 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.988 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds