Wall clock time and date at job start Tue Mar 31 2020 10:42:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 O 1.45200 * 109.47060 * 2 1 4 4 C 1.34766 * 116.99552 * 179.97438 * 3 2 1 5 5 O 1.21524 * 120.00543 * 359.97438 * 4 3 2 6 6 C 1.47248 * 119.99355 * 179.97438 * 4 3 2 7 7 C 1.38288 * 126.47325 * 270.01699 * 6 4 3 8 8 C 1.50705 * 125.80609 * 359.93792 * 7 6 4 9 9 N 1.34223 * 108.38956 * 180.19498 * 7 6 4 10 10 H 0.96998 * 125.38424 * 179.73708 * 9 7 6 11 11 C 1.37795 * 109.23353 * 359.63521 * 9 7 6 12 12 C 1.46817 * 125.83891 * 180.11692 * 11 9 7 13 13 O 1.21671 * 120.00146 * 156.19091 * 12 11 9 14 14 N 1.34778 * 119.99996 * 336.18817 * 12 11 9 15 15 C 1.46498 * 119.99719 * 5.38055 * 14 12 11 16 16 C 1.46496 * 120.00003 * 185.38605 * 14 12 11 17 17 C 1.50699 * 109.47337 * 89.99597 * 16 14 12 18 18 H 1.07999 * 120.00122 * 0.02562 * 17 16 14 19 19 C 1.37873 * 120.00110 * 179.97438 * 17 16 14 20 20 N 1.31520 * 120.00041 * 0.02562 * 19 17 16 21 21 Si 1.86800 * 120.00016 * 180.02562 * 19 17 16 22 22 H 1.48495 * 109.47228 * 60.00642 * 21 19 17 23 23 H 1.48509 * 109.47082 * 180.02562 * 21 19 17 24 24 H 1.48498 * 109.47240 * 300.00308 * 21 19 17 25 25 C 1.36327 * 108.31944 * 0.36929 * 11 9 7 26 26 C 1.50697 * 126.49786 * 179.77889 * 25 11 9 27 27 H 1.09004 * 109.47069 * 60.00591 * 1 2 3 28 28 H 1.09002 * 109.47034 * 180.02562 * 1 2 3 29 29 H 1.08992 * 109.47639 * 300.00539 * 1 2 3 30 30 H 1.08996 * 109.47375 * 239.99050 * 2 1 3 31 31 H 1.09006 * 109.46848 * 119.99901 * 2 1 3 32 32 H 1.08994 * 109.47137 * 89.98997 * 8 7 6 33 33 H 1.09008 * 109.46684 * 329.99677 * 8 7 6 34 34 H 1.08994 * 109.46907 * 210.00133 * 8 7 6 35 35 H 1.09003 * 109.46869 * 92.02943 * 15 14 12 36 36 H 1.09004 * 109.47334 * 212.02358 * 15 14 12 37 37 H 1.09000 * 109.47566 * 332.02252 * 15 14 12 38 38 H 1.09003 * 109.47101 * 209.99810 * 16 14 12 39 39 H 1.08998 * 109.47171 * 329.99966 * 16 14 12 40 40 H 0.96999 * 119.99413 * 179.97438 * 20 19 17 41 41 H 1.08994 * 109.47218 * 270.02577 * 26 25 11 42 42 H 1.09005 * 109.47077 * 30.03105 * 26 25 11 43 43 H 1.09001 * 109.47386 * 150.01998 * 26 25 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3500 1.5455 0.0005 5 8 4.0903 0.5817 0.0015 6 6 3.9128 2.9062 0.0000 7 6 4.2272 3.6653 -1.1123 8 6 4.0534 3.2402 -2.5477 9 7 4.7187 4.8429 -0.6962 10 1 5.0210 5.5611 -1.2738 11 6 4.7240 4.8712 0.6815 12 6 5.1851 5.9872 1.5166 13 8 4.7695 6.1085 2.6537 14 7 6.0689 6.8774 1.0237 15 6 6.4796 6.8012 -0.3805 16 6 6.6190 7.9211 1.8922 17 6 7.8774 7.4160 2.5496 18 1 8.2322 6.4175 2.3411 19 6 8.5763 8.2289 3.4166 20 7 8.1446 9.4450 3.6701 21 14 10.1366 7.6030 4.2310 22 1 11.1328 7.2511 3.1875 23 1 10.6941 8.6610 5.1114 24 1 9.8230 6.3992 5.0420 25 6 4.2331 3.6835 1.1364 26 6 4.0640 3.2765 2.5774 27 1 -0.3633 0.5138 -0.8901 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3634 0.5139 0.8898 30 1 1.8934 -0.5140 -0.8899 31 1 1.8933 -0.5139 0.8901 32 1 3.0615 3.5295 -2.8947 33 1 4.1630 2.1582 -2.6220 34 1 4.8100 3.7252 -3.1644 35 1 5.8297 7.4349 -0.9839 36 1 7.5105 7.1419 -0.4766 37 1 6.4041 5.7700 -0.7257 38 1 6.8495 8.8048 1.2971 39 1 5.8876 8.1794 2.6579 40 1 8.6362 10.0167 4.2804 41 1 4.9732 2.7864 2.9257 42 1 3.8725 4.1612 3.1848 43 1 3.2238 2.5875 2.6643 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000069649034.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:42:50 Heat of formation + Delta-G solvation = -69.555443 kcal Electronic energy + Delta-G solvation = -25648.995784 eV Core-core repulsion = 21888.715570 eV Total energy + Delta-G solvation = -3760.280214 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 308.157 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.79955 -40.08347 -38.46767 -36.52565 -35.21428 -33.00673 -32.70148 -32.09408 -31.42750 -28.41551 -27.83160 -27.01228 -25.36301 -24.52152 -23.01294 -22.33096 -20.33269 -19.96241 -19.00463 -17.55449 -17.07050 -16.61777 -16.59435 -16.01113 -15.49188 -15.30644 -14.93809 -14.37909 -14.21670 -13.98772 -13.54735 -13.39822 -13.13906 -13.08854 -12.99285 -12.74668 -12.49864 -12.42804 -12.17343 -12.11141 -12.03813 -11.79366 -11.76342 -11.42164 -11.26030 -10.94539 -10.66059 -10.65750 -10.60077 -10.20293 -9.73063 -9.18616 -8.81055 -8.47798 -8.10219 -7.74885 -6.09234 -4.14707 1.65491 2.11998 2.14716 2.78436 3.08936 3.30297 3.34816 3.37918 3.64625 3.97084 4.41403 4.54934 4.69693 4.71108 4.78051 4.88465 5.00629 5.03889 5.19241 5.24036 5.25455 5.27826 5.43806 5.52935 5.55311 5.57021 5.58415 5.73713 5.81616 5.95920 6.04203 6.15582 6.31318 6.45233 6.62451 6.83306 7.00243 7.26619 7.34251 7.42110 7.75177 7.86582 8.15691 8.22859 8.79373 8.94620 9.50790 10.98791 Molecular weight = 308.16amu Principal moments of inertia in cm(-1) A = 0.022385 B = 0.003236 C = 0.003089 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1250.533739 B = 8651.719711 C = 9062.685215 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.059 3.941 3 O -0.350 6.350 4 C 0.554 3.446 5 O -0.503 6.503 6 C -0.214 4.214 7 C 0.089 3.911 8 C -0.094 4.094 9 N -0.524 5.524 10 H 0.426 0.574 11 C -0.031 4.031 12 C 0.579 3.421 13 O -0.521 6.521 14 N -0.598 5.598 15 C 0.061 3.939 16 C 0.246 3.754 17 C -0.531 4.531 18 H 0.058 0.942 19 C 0.063 3.937 20 N -0.894 5.894 21 Si 0.899 3.101 22 H -0.277 1.277 23 H -0.286 1.286 24 H -0.275 1.275 25 C -0.041 4.041 26 C -0.098 4.098 27 H 0.066 0.934 28 H 0.078 0.922 29 H 0.068 0.932 30 H 0.068 0.932 31 H 0.070 0.930 32 H 0.083 0.917 33 H 0.082 0.918 34 H 0.075 0.925 35 H 0.049 0.951 36 H 0.084 0.916 37 H 0.062 0.938 38 H 0.034 0.966 39 H 0.049 0.951 40 H 0.265 0.735 41 H 0.070 0.930 42 H 0.095 0.905 43 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.315 -13.787 -14.166 23.290 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.015 4.015 3 O -0.267 6.267 4 C 0.397 3.603 5 O -0.390 6.390 6 C -0.222 4.222 7 C -0.032 4.032 8 C -0.151 4.151 9 N -0.126 5.126 10 H 0.271 0.729 11 C -0.143 4.143 12 C 0.365 3.635 13 O -0.397 6.397 14 N -0.329 5.329 15 C -0.084 4.084 16 C 0.127 3.873 17 C -0.570 4.570 18 H 0.076 0.924 19 C -0.140 4.140 20 N -0.532 5.532 21 Si 0.727 3.273 22 H -0.202 1.202 23 H -0.211 1.211 24 H -0.200 1.200 25 C -0.048 4.048 26 C -0.155 4.155 27 H 0.085 0.915 28 H 0.097 0.903 29 H 0.087 0.913 30 H 0.087 0.913 31 H 0.088 0.912 32 H 0.102 0.898 33 H 0.101 0.899 34 H 0.094 0.906 35 H 0.067 0.933 36 H 0.103 0.897 37 H 0.080 0.920 38 H 0.052 0.948 39 H 0.067 0.933 40 H 0.074 0.926 41 H 0.088 0.912 42 H 0.113 0.887 43 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -12.206 -13.649 -13.489 22.743 hybrid contribution 1.212 -0.146 0.038 1.221 sum -10.995 -13.795 -13.451 22.184 Atomic orbital electron populations 1.21801 0.92651 1.02814 1.03657 1.23034 0.95387 0.80552 1.02563 1.86707 1.24306 1.31808 1.83914 1.20295 0.80110 0.88756 0.71136 1.90836 1.60601 1.42523 1.45049 1.18184 1.15917 0.94376 0.93717 1.20466 1.01025 0.86446 0.95292 1.20493 1.03215 1.02828 0.88564 1.42574 1.48463 1.14525 1.07058 0.72900 1.20236 1.13664 0.98955 0.81419 1.16973 0.79773 0.80670 0.86088 1.90777 1.57469 1.73374 1.18066 1.48101 1.42265 1.31891 1.10673 1.22061 1.02398 1.00348 0.83545 1.19365 0.94269 0.84275 0.89355 1.21385 1.08382 1.00449 1.26796 0.92399 1.24927 0.98046 0.94792 0.96186 1.69922 1.39753 1.07586 1.35982 0.86540 0.82791 0.78607 0.79405 1.20249 1.21118 1.20034 1.19420 0.99323 0.91046 0.95036 1.20456 1.01454 1.02958 0.90663 0.91505 0.90344 0.91339 0.91323 0.91196 0.89842 0.89930 0.90577 0.93288 0.89683 0.91978 0.94762 0.93296 0.92560 0.91158 0.88658 0.92301 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.02 10.29 37.16 0.38 -0.63 16 2 C 0.06 0.55 6.20 37.16 0.23 0.79 16 3 O -0.35 -4.49 10.23 -40.67 -0.42 -4.90 16 4 C 0.55 8.20 7.14 34.39 0.25 8.45 16 5 O -0.50 -8.42 16.90 -19.28 -0.33 -8.74 16 6 C -0.21 -3.26 6.01 -105.03 -0.63 -3.89 16 7 C 0.09 1.11 7.21 -81.53 -0.59 0.52 16 8 C -0.09 -0.76 10.24 36.01 0.37 -0.39 16 9 N -0.52 -6.85 4.73 -5.60 -0.03 -6.88 16 10 H 0.43 4.34 5.73 -40.82 -0.23 4.11 16 11 C -0.03 -0.55 6.41 -82.40 -0.53 -1.08 16 12 C 0.58 12.37 7.55 -12.79 -0.10 12.28 16 13 O -0.52 -13.00 14.50 5.21 0.08 -12.92 16 14 N -0.60 -12.49 2.86 -184.46 -0.53 -13.02 16 15 C 0.06 0.91 9.10 59.85 0.54 1.45 16 16 C 0.25 6.30 5.21 -5.20 -0.03 6.28 16 17 C -0.53 -14.89 9.39 -34.44 -0.32 -15.22 16 18 H 0.06 1.63 7.81 -52.49 -0.41 1.22 16 19 C 0.06 1.78 5.46 -17.82 -0.10 1.68 16 20 N -0.89 -26.22 13.29 55.43 0.74 -25.48 16 21 Si 0.90 21.76 29.54 -169.99 -5.02 16.74 16 22 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 23 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 24 H -0.27 -6.70 7.11 56.52 0.40 -6.30 16 25 C -0.04 -0.71 6.20 -104.13 -0.65 -1.36 16 26 C -0.10 -1.64 9.90 36.00 0.36 -1.29 16 27 H 0.07 0.43 8.14 -51.93 -0.42 0.00 16 28 H 0.08 0.36 8.14 -51.93 -0.42 -0.06 16 29 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 30 H 0.07 0.60 8.14 -51.93 -0.42 0.17 16 31 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 32 H 0.08 0.55 8.14 -51.93 -0.42 0.12 16 33 H 0.08 0.69 7.93 -51.92 -0.41 0.27 16 34 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 35 H 0.05 0.58 7.95 -51.93 -0.41 0.16 16 36 H 0.08 1.30 8.09 -51.93 -0.42 0.88 16 37 H 0.06 0.79 4.70 -51.93 -0.24 0.55 16 38 H 0.03 0.88 8.07 -51.93 -0.42 0.46 16 39 H 0.05 1.41 7.35 -51.93 -0.38 1.03 16 40 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 41 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 42 H 0.09 1.75 6.27 -51.93 -0.33 1.43 16 43 H 0.06 0.86 8.05 -51.93 -0.42 0.44 16 LS Contribution 365.06 15.07 5.50 5.50 Total: -1.00 -35.04 365.06 -7.01 -42.05 By element: Atomic # 1 Polarization: 6.26 SS G_CDS: -6.19 Total: 0.07 kcal Atomic # 6 Polarization: 8.41 SS G_CDS: -0.81 Total: 7.60 kcal Atomic # 7 Polarization: -45.56 SS G_CDS: 0.18 Total: -45.38 kcal Atomic # 8 Polarization: -25.90 SS G_CDS: -0.67 Total: -26.57 kcal Atomic # 14 Polarization: 21.76 SS G_CDS: -5.02 Total: 16.74 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -35.04 -7.01 -42.05 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000069649034.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.506 kcal (2) G-P(sol) polarization free energy of solvation -35.045 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.550 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.005 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.050 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.555 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds