Wall clock time and date at job start Tue Mar 31 2020 09:44:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42903 * 114.00026 * 2 1 4 4 C 1.52992 * 109.47460 * 179.97438 * 3 2 1 5 5 H 1.09000 * 109.47681 * 174.99894 * 4 3 2 6 6 C 1.53005 * 109.47189 * 54.99400 * 4 3 2 7 7 N 1.46504 * 109.46904 * 294.99831 * 4 3 2 8 8 C 1.34780 * 120.00101 * 205.00161 * 7 4 3 9 9 O 1.21585 * 119.99713 * 359.97438 * 8 7 4 10 10 N 1.34775 * 120.00087 * 179.97438 * 8 7 4 11 11 C 1.46498 * 119.99904 * 179.97438 * 10 8 7 12 12 C 1.50695 * 109.47300 * 179.97438 * 11 10 8 13 13 C 1.38300 * 119.93634 * 269.73138 * 12 11 10 14 14 C 1.38103 * 120.07235 * 179.72038 * 13 12 11 15 15 C 1.38881 * 119.92859 * 0.56979 * 14 13 12 16 16 O 1.35743 * 120.07033 * 179.67702 * 15 14 13 17 17 C 1.34829 * 117.00323 * 174.48588 * 16 15 14 18 18 H 1.08000 * 119.99772 * 5.06302 * 17 16 15 19 19 C 1.38655 * 120.00285 * 185.06067 * 17 16 15 20 20 N 1.31556 * 119.99986 * 0.02562 * 19 17 16 21 21 Si 1.86800 * 119.99817 * 180.02562 * 19 17 16 22 22 H 1.48498 * 109.47529 * 359.97438 * 21 19 17 23 23 H 1.48504 * 109.47049 * 119.99936 * 21 19 17 24 24 H 1.48497 * 109.46877 * 239.99598 * 21 19 17 25 25 C 1.38884 * 119.86119 * 359.70391 * 15 14 13 26 26 C 1.38100 * 119.93123 * 0.02562 * 25 15 14 27 27 H 1.08998 * 109.46585 * 179.97438 * 1 2 3 28 28 H 1.09003 * 109.47322 * 300.00341 * 1 2 3 29 29 H 1.08996 * 109.46450 * 60.00753 * 1 2 3 30 30 H 1.08995 * 109.47318 * 59.99241 * 3 2 1 31 31 H 1.09007 * 109.46555 * 299.99585 * 3 2 1 32 32 H 1.08999 * 109.46945 * 60.00295 * 6 4 3 33 33 H 1.09008 * 109.47039 * 180.02562 * 6 4 3 34 34 H 1.08997 * 109.47090 * 300.00013 * 6 4 3 35 35 H 0.96999 * 120.00481 * 24.99206 * 7 4 3 36 36 H 0.96993 * 120.00031 * 359.97438 * 10 8 7 37 37 H 1.08999 * 109.47244 * 60.00112 * 11 10 8 38 38 H 1.09004 * 109.47345 * 300.00174 * 11 10 8 39 39 H 1.08004 * 119.96372 * 359.97187 * 13 12 11 40 40 H 1.07998 * 120.03412 * 180.26808 * 14 13 12 41 41 H 0.97002 * 119.99992 * 180.02562 * 20 19 17 42 42 H 1.07996 * 120.03050 * 179.97438 * 25 15 14 43 43 H 1.08003 * 119.96708 * 180.02562 * 26 25 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5354 1.1848 0.0006 5 1 3.9785 2.1766 -0.0889 6 6 3.9791 0.3194 -1.1806 7 7 3.9756 0.5646 1.2528 8 6 5.2195 0.7948 1.7181 9 8 5.9763 1.5168 1.0983 10 7 5.6242 0.2247 2.8703 11 6 6.9764 0.4745 3.3756 12 6 7.1755 -0.2732 4.6688 13 6 6.8683 0.3353 5.8722 14 6 7.0442 -0.3494 7.0586 15 6 7.5414 -1.6461 7.0431 16 8 7.7216 -2.3193 8.2080 17 6 8.0979 -3.6108 8.1167 18 1 8.3216 -4.0412 7.1517 19 6 8.1979 -4.3865 9.2616 20 7 7.9250 -3.8624 10.4370 21 14 8.7200 -6.1755 9.1351 22 1 8.9672 -6.5197 7.7118 23 1 9.9640 -6.3848 9.9187 24 1 7.6434 -7.0446 9.6742 25 6 7.8543 -2.2524 5.8334 26 6 7.6708 -1.5644 4.6501 27 1 -0.3632 -1.0277 -0.0005 28 1 -0.3634 0.5139 0.8900 29 1 -0.3632 0.5137 -0.8901 30 1 1.6886 1.8464 0.8899 31 1 1.6886 1.8463 -0.8901 32 1 3.6515 0.7808 -2.1122 33 1 5.0657 0.2330 -1.1798 34 1 3.5361 -0.6725 -1.0909 35 1 3.3719 -0.0117 1.7472 36 1 5.0203 -0.3510 3.3648 37 1 7.1076 1.5424 3.5500 38 1 7.7072 0.1337 2.6422 39 1 6.4866 1.3455 5.8838 40 1 6.8001 0.1248 7.9976 41 1 7.9952 -4.4049 11.2381 42 1 8.2414 -3.2604 5.8182 43 1 7.9136 -2.0355 3.7090 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000069717707.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:44:55 Heat of formation + Delta-G solvation = -82.864598 kcal Electronic energy + Delta-G solvation = -24236.176732 eV Core-core repulsion = 20475.319389 eV Total energy + Delta-G solvation = -3760.857342 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 308.157 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.11182 -39.12137 -38.39757 -36.90559 -35.37492 -34.25950 -32.38593 -31.33591 -30.25895 -29.40001 -27.69761 -26.10158 -25.79858 -24.63471 -22.04079 -21.78839 -20.62545 -20.57812 -18.54674 -18.05467 -17.13651 -16.99530 -16.51262 -15.92655 -15.42013 -15.25343 -14.81006 -14.63278 -14.44592 -14.32015 -13.86961 -13.69534 -13.50122 -13.38628 -12.96828 -12.77633 -12.67761 -12.48228 -12.16624 -12.04422 -11.68413 -11.49776 -11.38767 -11.23522 -10.96904 -10.76120 -10.66519 -10.47404 -10.16721 -10.08413 -9.41461 -9.26366 -8.91237 -8.72208 -8.26990 -7.31895 -6.52699 -4.11447 2.04622 2.14481 2.86917 3.08818 3.10047 3.15540 3.25611 3.40069 3.90750 4.28194 4.47851 4.59930 4.72759 4.87910 4.95938 5.01682 5.02514 5.16459 5.17975 5.26269 5.29047 5.32403 5.47190 5.54873 5.68937 5.78310 5.84273 5.96804 6.13434 6.13644 6.36935 6.45203 6.60406 6.64885 6.70166 6.81869 6.93819 7.03797 7.17698 7.29596 7.36296 7.72878 7.92328 8.11306 8.68571 8.92904 9.61378 10.64964 Molecular weight = 308.16amu Principal moments of inertia in cm(-1) A = 0.019006 B = 0.002310 C = 0.002201 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1472.844797 B =12119.489227 C =12718.685963 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.387 6.387 3 C 0.051 3.949 4 C 0.166 3.834 5 H 0.099 0.901 6 C -0.160 4.160 7 N -0.743 5.743 8 C 0.702 3.298 9 O -0.599 6.599 10 N -0.738 5.738 11 C 0.198 3.802 12 C -0.213 4.213 13 C -0.054 4.054 14 C -0.196 4.196 15 C 0.160 3.840 16 O -0.174 6.174 17 C -0.393 4.393 18 H 0.094 0.906 19 C 0.040 3.960 20 N -0.860 5.860 21 Si 0.942 3.058 22 H -0.266 1.266 23 H -0.275 1.275 24 H -0.275 1.275 25 C -0.237 4.237 26 C -0.050 4.050 27 H 0.087 0.913 28 H 0.042 0.958 29 H 0.041 0.959 30 H 0.057 0.943 31 H 0.064 0.936 32 H 0.060 0.940 33 H 0.061 0.939 34 H 0.065 0.935 35 H 0.400 0.600 36 H 0.397 0.603 37 H 0.064 0.936 38 H 0.064 0.936 39 H 0.112 0.888 40 H 0.118 0.882 41 H 0.271 0.729 42 H 0.128 0.872 43 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.359 7.390 -18.521 23.460 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.306 6.306 3 C -0.026 4.026 4 C 0.060 3.940 5 H 0.117 0.883 6 C -0.219 4.219 7 N -0.399 5.399 8 C 0.402 3.598 9 O -0.479 6.479 10 N -0.393 5.393 11 C 0.075 3.925 12 C -0.215 4.215 13 C -0.073 4.073 14 C -0.215 4.215 15 C 0.106 3.894 16 O -0.077 6.077 17 C -0.469 4.469 18 H 0.111 0.889 19 C -0.165 4.165 20 N -0.494 5.494 21 Si 0.767 3.233 22 H -0.190 1.190 23 H -0.201 1.201 24 H -0.201 1.201 25 C -0.256 4.256 26 C -0.069 4.069 27 H 0.105 0.895 28 H 0.060 0.940 29 H 0.059 0.941 30 H 0.075 0.925 31 H 0.082 0.918 32 H 0.079 0.921 33 H 0.080 0.920 34 H 0.084 0.916 35 H 0.234 0.766 36 H 0.231 0.769 37 H 0.082 0.918 38 H 0.082 0.918 39 H 0.130 0.870 40 H 0.136 0.864 41 H 0.081 0.919 42 H 0.146 0.854 43 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -11.543 7.887 -18.595 23.264 hybrid contribution -0.544 -1.284 0.446 1.464 sum -12.087 6.603 -18.148 22.783 Atomic orbital electron populations 1.22758 0.80843 1.02947 0.99998 1.87903 1.19781 1.27454 1.95415 1.22897 0.93190 0.85326 1.01175 1.20823 0.91083 0.98198 0.83866 0.88310 1.22102 1.02137 1.00801 0.96830 1.45156 1.14317 1.54286 1.26130 1.16037 0.81960 0.80619 0.81231 1.90894 1.54189 1.42702 1.60065 1.45504 1.16963 1.52879 1.23943 1.19817 0.81644 0.98749 0.92259 1.19235 1.12383 0.96414 0.93447 1.20537 0.97241 0.98169 0.91309 1.20217 1.08905 0.94134 0.98266 1.19442 0.91586 0.91845 0.86556 1.83976 1.73950 1.24577 1.25166 1.21405 1.46538 0.83532 0.95391 0.88870 1.25321 0.96758 1.00205 0.94230 1.70046 1.44558 1.36841 0.97966 0.85628 0.78474 0.80327 0.78900 1.19035 1.20070 1.20083 1.21164 1.10287 1.02134 0.92054 1.20656 0.96023 0.93214 0.96984 0.89498 0.93975 0.94075 0.92512 0.91760 0.92109 0.91975 0.91625 0.76635 0.76885 0.91784 0.91812 0.86962 0.86405 0.91947 0.85432 0.87376 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.17 11.01 101.05 1.11 1.28 16 2 O -0.39 -3.10 9.56 -35.23 -0.34 -3.43 16 3 C 0.05 0.36 5.68 37.15 0.21 0.57 16 4 C 0.17 1.54 2.98 -67.93 -0.20 1.34 16 5 H 0.10 1.00 7.58 -51.93 -0.39 0.61 16 6 C -0.16 -1.50 9.29 37.16 0.35 -1.16 16 7 N -0.74 -7.82 5.06 -58.67 -0.30 -8.12 16 8 C 0.70 9.68 8.53 -86.92 -0.74 8.94 16 9 O -0.60 -10.40 16.01 5.29 0.08 -10.32 16 10 N -0.74 -9.60 5.55 -66.42 -0.37 -9.96 16 11 C 0.20 2.85 5.80 -5.20 -0.03 2.82 16 12 C -0.21 -3.45 5.25 -104.58 -0.55 -4.00 16 13 C -0.05 -0.91 9.69 -39.61 -0.38 -1.29 16 14 C -0.20 -3.95 9.99 -39.39 -0.39 -4.35 16 15 C 0.16 3.73 6.65 -39.10 -0.26 3.47 16 16 O -0.17 -4.83 9.76 0.07 0.00 -4.83 16 17 C -0.39 -10.69 9.49 30.89 0.29 -10.40 16 18 H 0.09 2.35 5.20 -52.49 -0.27 2.08 16 19 C 0.04 1.07 5.49 -17.52 -0.10 0.97 16 20 N -0.86 -24.72 13.67 55.48 0.76 -23.96 16 21 Si 0.94 20.08 29.55 -169.99 -5.02 15.06 16 22 H -0.27 -5.43 7.11 56.52 0.40 -5.03 16 23 H -0.28 -5.76 7.11 56.52 0.40 -5.36 16 24 H -0.28 -5.75 7.11 56.52 0.40 -5.35 16 25 C -0.24 -4.94 9.17 -39.39 -0.36 -5.30 16 26 C -0.05 -0.87 9.69 -39.61 -0.38 -1.26 16 27 H 0.09 0.41 8.14 -51.93 -0.42 -0.01 16 28 H 0.04 0.20 8.14 -51.93 -0.42 -0.22 16 29 H 0.04 0.18 8.14 -51.93 -0.42 -0.24 16 30 H 0.06 0.37 8.14 -51.93 -0.42 -0.06 16 31 H 0.06 0.35 8.14 -51.92 -0.42 -0.07 16 32 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 33 H 0.06 0.71 8.14 -51.92 -0.42 0.29 16 34 H 0.06 0.64 7.56 -51.93 -0.39 0.25 16 35 H 0.40 3.61 8.40 -40.82 -0.34 3.26 16 36 H 0.40 4.61 8.48 -40.82 -0.35 4.26 16 37 H 0.06 0.93 8.08 -51.93 -0.42 0.51 16 38 H 0.06 0.95 8.08 -51.93 -0.42 0.53 16 39 H 0.11 1.61 8.06 -52.48 -0.42 1.19 16 40 H 0.12 2.31 8.06 -52.49 -0.42 1.88 16 41 H 0.27 7.11 8.31 -40.82 -0.34 6.77 16 42 H 0.13 2.68 5.64 -52.49 -0.30 2.38 16 43 H 0.11 1.66 8.06 -52.48 -0.42 1.23 16 LS Contribution 367.68 15.07 5.54 5.54 Total: -1.00 -32.13 367.68 -7.33 -39.45 By element: Atomic # 1 Polarization: 15.18 SS G_CDS: -6.25 Total: 8.93 kcal Atomic # 6 Polarization: -6.92 SS G_CDS: -1.44 Total: -8.36 kcal Atomic # 7 Polarization: -42.13 SS G_CDS: 0.09 Total: -42.04 kcal Atomic # 8 Polarization: -18.33 SS G_CDS: -0.25 Total: -18.58 kcal Atomic # 14 Polarization: 20.08 SS G_CDS: -5.02 Total: 15.06 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -32.13 -7.33 -39.45 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000069717707.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.412 kcal (2) G-P(sol) polarization free energy of solvation -32.125 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.537 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.327 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.452 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.865 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds