Wall clock time and date at job start Tue Mar 31 2020 09:44:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42901 * 113.99975 * 2 1 4 4 C 1.53003 * 109.47117 * 179.97438 * 3 2 1 5 5 H 1.09003 * 109.46824 * 184.99858 * 4 3 2 6 6 C 1.52994 * 109.47162 * 304.99807 * 4 3 2 7 7 N 1.46492 * 109.47118 * 65.00219 * 4 3 2 8 8 C 1.34777 * 120.00434 * 154.99786 * 7 4 3 9 9 O 1.21591 * 119.99393 * 0.02562 * 8 7 4 10 10 N 1.34768 * 120.00297 * 179.97438 * 8 7 4 11 11 C 1.46503 * 120.00179 * 180.02562 * 10 8 7 12 12 C 1.50701 * 109.47448 * 180.02562 * 11 10 8 13 13 C 1.38299 * 119.93217 * 269.73027 * 12 11 10 14 14 C 1.38093 * 120.06953 * 179.72477 * 13 12 11 15 15 C 1.38883 * 119.92808 * 0.56550 * 14 13 12 16 16 O 1.35754 * 120.06438 * 179.68623 * 15 14 13 17 17 C 1.34826 * 116.99724 * 174.49160 * 16 15 14 18 18 H 1.07998 * 120.00100 * 5.04739 * 17 16 15 19 19 C 1.38654 * 119.99970 * 185.05457 * 17 16 15 20 20 N 1.31557 * 120.00012 * 359.97438 * 19 17 16 21 21 Si 1.86803 * 119.99959 * 179.97438 * 19 17 16 22 22 H 1.48500 * 109.47303 * 60.00249 * 21 19 17 23 23 H 1.48499 * 109.46956 * 179.97438 * 21 19 17 24 24 H 1.48498 * 109.47359 * 299.99968 * 21 19 17 25 25 C 1.38871 * 119.86468 * 359.70509 * 15 14 13 26 26 C 1.38101 * 119.93230 * 0.02562 * 25 15 14 27 27 H 1.09003 * 109.46980 * 60.00635 * 1 2 3 28 28 H 1.09005 * 109.47372 * 180.02562 * 1 2 3 29 29 H 1.09002 * 109.47266 * 300.00143 * 1 2 3 30 30 H 1.09004 * 109.47031 * 59.99539 * 3 2 1 31 31 H 1.08998 * 109.47239 * 299.99655 * 3 2 1 32 32 H 1.09004 * 109.47423 * 300.00154 * 6 4 3 33 33 H 1.09003 * 109.47209 * 60.00287 * 6 4 3 34 34 H 1.08995 * 109.47200 * 180.02562 * 6 4 3 35 35 H 0.97007 * 119.99685 * 334.99815 * 7 4 3 36 36 H 0.97000 * 120.00448 * 0.02562 * 10 8 7 37 37 H 1.09002 * 109.46848 * 59.99850 * 11 10 8 38 38 H 1.09001 * 109.46885 * 300.00464 * 11 10 8 39 39 H 1.08005 * 119.96050 * 359.97425 * 13 12 11 40 40 H 1.07999 * 120.03730 * 180.26989 * 14 13 12 41 41 H 0.97002 * 120.00021 * 179.97438 * 20 19 17 42 42 H 1.08002 * 120.03853 * 179.97438 * 25 15 14 43 43 H 1.07997 * 119.96732 * 179.97438 * 26 25 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5355 1.1847 0.0006 5 1 3.9784 2.1766 0.0902 6 6 3.9781 0.3199 1.1826 7 7 3.9767 0.5641 -1.2508 8 6 5.2208 0.7940 -1.7152 9 8 5.9772 1.5163 -1.0950 10 7 5.6269 0.2227 -2.8662 11 6 6.9795 0.4722 -3.3706 12 6 7.1801 -0.2770 -4.6627 13 6 7.6804 -1.5661 -4.6424 14 6 7.8600 -2.2573 -5.8243 15 6 7.5486 -1.6523 -7.0350 16 8 7.7300 -2.3270 -8.1990 17 6 7.3020 -1.7264 -9.3277 18 1 6.9138 -0.7193 -9.2897 19 6 7.3600 -2.4018 -10.5372 20 7 7.8332 -3.6284 -10.5836 21 14 6.7663 -1.5699 -12.1009 22 1 7.5615 -0.3386 -12.3391 23 1 6.9342 -2.4967 -13.2490 24 1 5.3320 -1.2130 -11.9578 25 6 7.0516 -0.3557 -7.0525 26 6 6.8690 0.3283 -5.8668 27 1 -0.3633 0.5137 -0.8901 28 1 -0.3634 -1.0277 0.0005 29 1 -0.3634 0.5139 0.8900 30 1 1.6885 1.8464 0.8900 31 1 1.6886 1.8464 -0.8900 32 1 3.6498 0.7817 2.1138 33 1 3.5351 -0.6721 1.0930 34 1 5.0646 0.2342 1.1833 35 1 3.3733 -0.0125 -1.7454 36 1 5.0236 -0.3538 -3.3608 37 1 7.7096 0.1324 -2.6360 38 1 7.1106 1.5400 -3.5460 39 1 7.9272 -2.0342 -3.7008 40 1 8.2467 -3.2656 -5.8076 41 1 7.8735 -4.1011 -11.4298 42 1 6.8089 0.1176 -7.9924 43 1 6.4829 1.3368 -5.8797 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000069717708.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:44:59 Heat of formation + Delta-G solvation = -82.739842 kcal Electronic energy + Delta-G solvation = -24233.059367 eV Core-core repulsion = 20472.207434 eV Total energy + Delta-G solvation = -3760.851932 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 308.157 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.11100 -39.12071 -38.39732 -36.90422 -35.37499 -34.25810 -32.38582 -31.33553 -30.25913 -29.39911 -27.69748 -26.10087 -25.79600 -24.63354 -22.04066 -21.78771 -20.62485 -20.57653 -18.54648 -18.05202 -17.14747 -16.97918 -16.51555 -15.90825 -15.44866 -15.27208 -14.74277 -14.62830 -14.50357 -14.31287 -13.83490 -13.69842 -13.59454 -13.29621 -13.00634 -12.77109 -12.69703 -12.42358 -12.17273 -12.05735 -11.68364 -11.49573 -11.37675 -11.23607 -10.94255 -10.77942 -10.68055 -10.49960 -10.16637 -10.08335 -9.42259 -9.26298 -8.90388 -8.72157 -8.26922 -7.31859 -6.52316 -4.11294 2.04845 2.14584 2.87142 3.09202 3.10390 3.13003 3.25638 3.40115 3.90806 4.28254 4.47832 4.60018 4.72844 4.87943 4.96034 5.01727 5.02604 5.16591 5.18015 5.26605 5.29050 5.32406 5.47104 5.54809 5.68857 5.78353 5.84325 5.96950 6.13393 6.13543 6.36984 6.45248 6.60540 6.64904 6.70203 6.81961 6.93765 7.03475 7.17661 7.29431 7.36203 7.72979 7.92313 8.11359 8.68627 8.92892 9.61365 10.65162 Molecular weight = 308.16amu Principal moments of inertia in cm(-1) A = 0.019296 B = 0.002314 C = 0.002183 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1450.735849 B =12099.103220 C =12825.172764 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.387 6.387 3 C 0.051 3.949 4 C 0.166 3.834 5 H 0.099 0.901 6 C -0.160 4.160 7 N -0.743 5.743 8 C 0.702 3.298 9 O -0.599 6.599 10 N -0.738 5.738 11 C 0.198 3.802 12 C -0.213 4.213 13 C -0.053 4.053 14 C -0.196 4.196 15 C 0.160 3.840 16 O -0.173 6.173 17 C -0.394 4.394 18 H 0.093 0.907 19 C 0.040 3.960 20 N -0.860 5.860 21 Si 0.942 3.058 22 H -0.269 1.269 23 H -0.277 1.277 24 H -0.269 1.269 25 C -0.237 4.237 26 C -0.050 4.050 27 H 0.042 0.958 28 H 0.087 0.913 29 H 0.041 0.959 30 H 0.064 0.936 31 H 0.057 0.943 32 H 0.060 0.940 33 H 0.065 0.935 34 H 0.061 0.939 35 H 0.400 0.600 36 H 0.397 0.603 37 H 0.064 0.936 38 H 0.063 0.937 39 H 0.113 0.887 40 H 0.118 0.882 41 H 0.272 0.728 42 H 0.128 0.872 43 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.654 8.031 18.048 23.459 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.305 6.305 3 C -0.026 4.026 4 C 0.060 3.940 5 H 0.117 0.883 6 C -0.219 4.219 7 N -0.399 5.399 8 C 0.402 3.598 9 O -0.479 6.479 10 N -0.393 5.393 11 C 0.075 3.925 12 C -0.215 4.215 13 C -0.072 4.072 14 C -0.215 4.215 15 C 0.106 3.894 16 O -0.076 6.076 17 C -0.470 4.470 18 H 0.110 0.890 19 C -0.165 4.165 20 N -0.494 5.494 21 Si 0.766 3.234 22 H -0.194 1.194 23 H -0.202 1.202 24 H -0.195 1.195 25 C -0.257 4.257 26 C -0.069 4.069 27 H 0.060 0.940 28 H 0.105 0.895 29 H 0.059 0.941 30 H 0.082 0.918 31 H 0.075 0.925 32 H 0.079 0.921 33 H 0.084 0.916 34 H 0.080 0.920 35 H 0.234 0.766 36 H 0.231 0.769 37 H 0.082 0.918 38 H 0.082 0.918 39 H 0.131 0.869 40 H 0.136 0.864 41 H 0.082 0.918 42 H 0.145 0.855 43 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -11.669 8.132 18.367 23.230 hybrid contribution -1.137 0.114 -1.333 1.756 sum -12.806 8.246 17.034 22.850 Atomic orbital electron populations 1.22758 0.80845 1.02947 0.99999 1.87900 1.19780 1.27454 1.95414 1.22900 0.93193 0.85325 1.01175 1.20822 0.91070 0.98197 0.83885 0.88319 1.22099 1.02137 1.00804 0.96819 1.45154 1.14295 1.54260 1.26177 1.16036 0.81959 0.80621 0.81232 1.90896 1.54242 1.42701 1.60019 1.45506 1.16948 1.52793 1.24041 1.19819 0.81628 0.98746 0.92274 1.19235 1.12263 0.96552 0.93441 1.20542 0.96759 0.93282 0.96643 1.20219 1.10197 1.00981 0.90095 1.19441 0.91755 0.90702 0.87548 1.83979 1.69014 1.42915 1.11695 1.21303 1.42943 0.99754 0.82980 0.88991 1.25315 0.96703 0.95724 0.98718 1.70027 1.41694 1.10440 1.27247 0.85766 0.79314 0.78742 0.79543 1.19431 1.20219 1.19452 1.21153 1.09903 0.95992 0.98627 1.20647 0.96465 0.98146 0.91645 0.93981 0.89494 0.94074 0.91765 0.92512 0.92117 0.91617 0.91972 0.76633 0.76883 0.91768 0.91832 0.86935 0.86392 0.91836 0.85457 0.87405 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.17 11.01 101.05 1.11 1.28 16 2 O -0.39 -3.10 9.55 -35.23 -0.34 -3.43 16 3 C 0.05 0.36 5.68 37.16 0.21 0.57 16 4 C 0.17 1.54 2.98 -67.94 -0.20 1.34 16 5 H 0.10 1.00 7.58 -51.93 -0.39 0.61 16 6 C -0.16 -1.50 9.29 37.15 0.35 -1.15 16 7 N -0.74 -7.83 5.06 -58.68 -0.30 -8.13 16 8 C 0.70 9.69 8.53 -86.93 -0.74 8.94 16 9 O -0.60 -10.41 16.01 5.29 0.08 -10.32 16 10 N -0.74 -9.60 5.55 -66.41 -0.37 -9.97 16 11 C 0.20 2.86 5.80 -5.19 -0.03 2.83 16 12 C -0.21 -3.45 5.25 -104.57 -0.55 -4.00 16 13 C -0.05 -0.91 9.69 -39.61 -0.38 -1.29 16 14 C -0.20 -3.96 9.99 -39.40 -0.39 -4.35 16 15 C 0.16 3.73 6.65 -39.11 -0.26 3.47 16 16 O -0.17 -4.82 9.76 0.05 0.00 -4.82 16 17 C -0.39 -10.72 9.49 30.89 0.29 -10.42 16 18 H 0.09 2.30 5.20 -52.49 -0.27 2.03 16 19 C 0.04 1.08 5.49 -17.52 -0.10 0.99 16 20 N -0.86 -24.71 13.67 55.48 0.76 -23.95 16 21 Si 0.94 20.02 29.55 -169.99 -5.02 15.00 16 22 H -0.27 -5.55 7.11 56.52 0.40 -5.15 16 23 H -0.28 -5.77 7.11 56.52 0.40 -5.37 16 24 H -0.27 -5.54 7.11 56.52 0.40 -5.14 16 25 C -0.24 -4.93 9.17 -39.40 -0.36 -5.29 16 26 C -0.05 -0.87 9.69 -39.61 -0.38 -1.26 16 27 H 0.04 0.20 8.14 -51.93 -0.42 -0.22 16 28 H 0.09 0.41 8.14 -51.93 -0.42 -0.01 16 29 H 0.04 0.18 8.14 -51.93 -0.42 -0.24 16 30 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 31 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 32 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 33 H 0.06 0.64 7.56 -51.93 -0.39 0.25 16 34 H 0.06 0.71 8.14 -51.93 -0.42 0.28 16 35 H 0.40 3.61 8.40 -40.82 -0.34 3.27 16 36 H 0.40 4.61 8.48 -40.82 -0.35 4.26 16 37 H 0.06 0.94 8.08 -51.93 -0.42 0.52 16 38 H 0.06 0.94 8.08 -51.93 -0.42 0.52 16 39 H 0.11 1.64 8.06 -52.48 -0.42 1.22 16 40 H 0.12 2.32 8.06 -52.49 -0.42 1.90 16 41 H 0.27 7.17 8.31 -40.82 -0.34 6.83 16 42 H 0.13 2.65 5.64 -52.49 -0.30 2.36 16 43 H 0.11 1.63 8.06 -52.49 -0.42 1.21 16 LS Contribution 367.68 15.07 5.54 5.54 Total: -1.00 -32.08 367.68 -7.33 -39.41 By element: Atomic # 1 Polarization: 15.27 SS G_CDS: -6.25 Total: 9.02 kcal Atomic # 6 Polarization: -6.91 SS G_CDS: -1.44 Total: -8.35 kcal Atomic # 7 Polarization: -42.14 SS G_CDS: 0.09 Total: -42.05 kcal Atomic # 8 Polarization: -18.32 SS G_CDS: -0.25 Total: -18.57 kcal Atomic # 14 Polarization: 20.02 SS G_CDS: -5.02 Total: 15.00 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -32.08 -7.33 -39.41 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000069717708.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.333 kcal (2) G-P(sol) polarization free energy of solvation -32.079 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.412 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.328 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.406 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.740 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds