Wall clock time and date at job start Tue Mar 31 2020 09:44:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42901 * 113.99975 * 2 1 4 4 C 1.53003 * 109.47117 * 179.97438 * 3 2 1 5 5 H 1.09003 * 109.46824 * 184.99858 * 4 3 2 6 6 C 1.52994 * 109.47162 * 304.99807 * 4 3 2 7 7 N 1.46492 * 109.47118 * 65.00219 * 4 3 2 8 8 C 1.34777 * 120.00434 * 154.99786 * 7 4 3 9 9 O 1.21591 * 119.99393 * 0.02562 * 8 7 4 10 10 N 1.34768 * 120.00297 * 179.97438 * 8 7 4 11 11 C 1.46503 * 120.00179 * 180.02562 * 10 8 7 12 12 C 1.50701 * 109.47448 * 180.02562 * 11 10 8 13 13 C 1.38299 * 119.93217 * 269.73027 * 12 11 10 14 14 C 1.38093 * 120.06953 * 179.72477 * 13 12 11 15 15 C 1.38883 * 119.92808 * 0.56550 * 14 13 12 16 16 O 1.35754 * 120.06438 * 179.68623 * 15 14 13 17 17 C 1.34826 * 116.99724 * 174.49160 * 16 15 14 18 18 H 1.07998 * 120.00100 * 5.04739 * 17 16 15 19 19 C 1.38654 * 119.99970 * 185.05457 * 17 16 15 20 20 N 1.31557 * 120.00012 * 359.97438 * 19 17 16 21 21 Si 1.86803 * 119.99959 * 179.97438 * 19 17 16 22 22 H 1.48500 * 109.47303 * 60.00249 * 21 19 17 23 23 H 1.48499 * 109.46956 * 179.97438 * 21 19 17 24 24 H 1.48498 * 109.47359 * 299.99968 * 21 19 17 25 25 C 1.38871 * 119.86468 * 359.70509 * 15 14 13 26 26 C 1.38101 * 119.93230 * 0.02562 * 25 15 14 27 27 H 1.09003 * 109.46980 * 60.00635 * 1 2 3 28 28 H 1.09005 * 109.47372 * 180.02562 * 1 2 3 29 29 H 1.09002 * 109.47266 * 300.00143 * 1 2 3 30 30 H 1.09004 * 109.47031 * 59.99539 * 3 2 1 31 31 H 1.08998 * 109.47239 * 299.99655 * 3 2 1 32 32 H 1.09004 * 109.47423 * 300.00154 * 6 4 3 33 33 H 1.09003 * 109.47209 * 60.00287 * 6 4 3 34 34 H 1.08995 * 109.47200 * 180.02562 * 6 4 3 35 35 H 0.97007 * 119.99685 * 334.99815 * 7 4 3 36 36 H 0.97000 * 120.00448 * 0.02562 * 10 8 7 37 37 H 1.09002 * 109.46848 * 59.99850 * 11 10 8 38 38 H 1.09001 * 109.46885 * 300.00464 * 11 10 8 39 39 H 1.08005 * 119.96050 * 359.97425 * 13 12 11 40 40 H 1.07999 * 120.03730 * 180.26989 * 14 13 12 41 41 H 0.97002 * 120.00021 * 179.97438 * 20 19 17 42 42 H 1.08002 * 120.03853 * 179.97438 * 25 15 14 43 43 H 1.07997 * 119.96732 * 179.97438 * 26 25 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5355 1.1847 0.0006 5 1 3.9784 2.1766 0.0902 6 6 3.9781 0.3199 1.1826 7 7 3.9767 0.5641 -1.2508 8 6 5.2208 0.7940 -1.7152 9 8 5.9772 1.5163 -1.0950 10 7 5.6269 0.2227 -2.8662 11 6 6.9795 0.4722 -3.3706 12 6 7.1801 -0.2770 -4.6627 13 6 7.6804 -1.5661 -4.6424 14 6 7.8600 -2.2573 -5.8243 15 6 7.5486 -1.6523 -7.0350 16 8 7.7300 -2.3270 -8.1990 17 6 7.3020 -1.7264 -9.3277 18 1 6.9138 -0.7193 -9.2897 19 6 7.3600 -2.4018 -10.5372 20 7 7.8332 -3.6284 -10.5836 21 14 6.7663 -1.5699 -12.1009 22 1 7.5615 -0.3386 -12.3391 23 1 6.9342 -2.4967 -13.2490 24 1 5.3320 -1.2130 -11.9578 25 6 7.0516 -0.3557 -7.0525 26 6 6.8690 0.3283 -5.8668 27 1 -0.3633 0.5137 -0.8901 28 1 -0.3634 -1.0277 0.0005 29 1 -0.3634 0.5139 0.8900 30 1 1.6885 1.8464 0.8900 31 1 1.6886 1.8464 -0.8900 32 1 3.6498 0.7817 2.1138 33 1 3.5351 -0.6721 1.0930 34 1 5.0646 0.2342 1.1833 35 1 3.3733 -0.0125 -1.7454 36 1 5.0236 -0.3538 -3.3608 37 1 7.7096 0.1324 -2.6360 38 1 7.1106 1.5400 -3.5460 39 1 7.9272 -2.0342 -3.7008 40 1 8.2467 -3.2656 -5.8076 41 1 7.8735 -4.1011 -11.4298 42 1 6.8089 0.1176 -7.9924 43 1 6.4829 1.3368 -5.8797 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000069717708.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:44:58 Heat of formation + Delta-G solvation = -105.829937 kcal Electronic energy + Delta-G solvation = -24234.060628 eV Core-core repulsion = 20472.207434 eV Total energy + Delta-G solvation = -3761.853194 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 308.157 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.20487 -40.71069 -39.10270 -38.47288 -36.26224 -35.51382 -34.27700 -32.37573 -31.81640 -30.71233 -28.23861 -27.64075 -26.61824 -26.06665 -23.63725 -22.75559 -22.04956 -21.53726 -19.89356 -19.56112 -18.81614 -17.82720 -17.18573 -16.67432 -16.61237 -16.35062 -16.20717 -16.01591 -15.83706 -15.53550 -15.29493 -15.06895 -14.82604 -14.37545 -14.32281 -14.13382 -13.72441 -13.53688 -13.22094 -13.10089 -12.98403 -12.73438 -12.52256 -12.37650 -12.21027 -12.13938 -12.08040 -11.95432 -11.32847 -11.19821 -10.79408 -10.60281 -10.31921 -9.81453 -9.71617 -9.01223 -8.47699 -6.16045 0.53799 0.58593 1.36104 1.45689 1.52037 1.85541 2.17755 2.20969 2.80116 2.86036 3.14135 3.47549 3.49240 3.84044 3.90489 4.04540 4.12122 4.18425 4.38509 4.48293 4.50640 4.54484 4.57817 4.61557 4.68985 4.75106 4.81845 4.84775 4.93698 5.02115 5.05441 5.14912 5.27608 5.36433 5.50368 5.54720 5.61690 5.69605 5.76797 6.01811 6.05683 6.17248 6.22408 6.96923 7.13553 7.63347 7.76297 8.74907 Molecular weight = 308.16amu Principal moments of inertia in cm(-1) A = 0.019296 B = 0.002314 C = 0.002183 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1450.735849 B =12099.103220 C =12825.172764 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.407 6.407 3 C 0.058 3.942 4 C 0.161 3.839 5 H 0.090 0.910 6 C -0.153 4.153 7 N -0.730 5.730 8 C 0.701 3.299 9 O -0.635 6.635 10 N -0.732 5.732 11 C 0.204 3.796 12 C -0.181 4.181 13 C -0.043 4.043 14 C -0.205 4.205 15 C 0.122 3.878 16 O -0.229 6.229 17 C -0.414 4.414 18 H 0.104 0.896 19 C -0.022 4.022 20 N -0.919 5.919 21 Si 1.018 2.982 22 H -0.258 1.258 23 H -0.273 1.273 24 H -0.256 1.256 25 C -0.244 4.244 26 C -0.044 4.044 27 H 0.048 0.952 28 H 0.091 0.909 29 H 0.052 0.948 30 H 0.084 0.916 31 H 0.063 0.937 32 H 0.079 0.921 33 H 0.061 0.939 34 H 0.037 0.963 35 H 0.409 0.591 36 H 0.406 0.594 37 H 0.068 0.932 38 H 0.068 0.932 39 H 0.146 0.854 40 H 0.115 0.885 41 H 0.273 0.727 42 H 0.121 0.879 43 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.519 10.071 19.861 26.584 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.326 6.326 3 C -0.019 4.019 4 C 0.056 3.944 5 H 0.108 0.892 6 C -0.212 4.212 7 N -0.386 5.386 8 C 0.401 3.599 9 O -0.517 6.517 10 N -0.388 5.388 11 C 0.081 3.919 12 C -0.182 4.182 13 C -0.062 4.062 14 C -0.224 4.224 15 C 0.071 3.929 16 O -0.135 6.135 17 C -0.490 4.490 18 H 0.121 0.879 19 C -0.220 4.220 20 N -0.557 5.557 21 Si 0.837 3.163 22 H -0.182 1.182 23 H -0.198 1.198 24 H -0.181 1.181 25 C -0.263 4.263 26 C -0.063 4.063 27 H 0.066 0.934 28 H 0.110 0.890 29 H 0.071 0.929 30 H 0.102 0.898 31 H 0.082 0.918 32 H 0.097 0.903 33 H 0.080 0.920 34 H 0.056 0.944 35 H 0.244 0.756 36 H 0.242 0.758 37 H 0.087 0.913 38 H 0.086 0.914 39 H 0.164 0.836 40 H 0.133 0.867 41 H 0.082 0.918 42 H 0.139 0.861 43 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -13.582 10.186 20.236 26.415 hybrid contribution -0.603 -0.407 -1.477 1.647 sum -14.186 9.780 18.759 25.471 Atomic orbital electron populations 1.22892 0.79560 1.03617 1.00873 1.87863 1.21203 1.27922 1.95612 1.22846 0.91258 0.85331 1.02492 1.20957 0.92828 0.97522 0.83103 0.89176 1.22025 1.00411 1.00859 0.97868 1.45109 1.13252 1.53800 1.26447 1.16122 0.82519 0.80261 0.81030 1.90879 1.55479 1.44338 1.61023 1.45262 1.16531 1.52922 1.24056 1.19705 0.82563 0.98618 0.91016 1.19498 1.08820 0.95836 0.94066 1.20874 0.95285 0.93365 0.96646 1.20444 1.10275 1.01349 0.90345 1.19992 0.93476 0.92014 0.87390 1.83949 1.71902 1.44710 1.12933 1.21796 1.43215 1.00446 0.83571 0.87895 1.26589 0.96733 0.96380 1.02273 1.70175 1.44739 1.12582 1.28197 0.84657 0.79295 0.77789 0.74560 1.18205 1.19763 1.18059 1.21243 1.09898 0.95307 0.99825 1.20941 0.95477 0.99254 0.90612 0.93374 0.89032 0.92918 0.89794 0.91837 0.90258 0.91975 0.94363 0.75561 0.75841 0.91332 0.91374 0.83640 0.86712 0.91800 0.86115 0.84282 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.22 11.01 113.37 1.25 1.47 16 2 O -0.41 -5.47 9.55 -148.98 -1.42 -6.90 16 3 C 0.06 0.65 5.68 71.98 0.41 1.06 16 4 C 0.16 2.65 2.98 44.99 0.13 2.79 16 5 H 0.09 1.68 7.58 -2.39 -0.02 1.66 16 6 C -0.15 -2.60 9.29 71.98 0.67 -1.94 16 7 N -0.73 -13.73 5.06 -457.83 -2.32 -16.04 16 8 C 0.70 17.68 8.53 179.06 1.53 19.21 16 9 O -0.64 -20.89 16.01 -4.00 -0.06 -20.95 16 10 N -0.73 -16.74 5.55 -482.29 -2.68 -19.42 16 11 C 0.20 5.16 5.80 85.63 0.50 5.66 16 12 C -0.18 -5.29 5.25 -19.83 -0.10 -5.39 16 13 C -0.04 -1.36 9.69 22.25 0.22 -1.15 16 14 C -0.20 -8.30 9.99 22.39 0.22 -8.08 16 15 C 0.12 5.85 6.65 22.58 0.15 6.00 16 16 O -0.23 -13.43 9.76 -22.74 -0.22 -13.65 16 17 C -0.41 -23.54 9.49 67.92 0.64 -22.89 16 18 H 0.10 5.32 5.20 -2.91 -0.02 5.30 16 19 C -0.02 -1.22 5.49 84.83 0.47 -0.76 16 20 N -0.92 -55.60 13.67 21.61 0.30 -55.30 16 21 Si 1.02 41.89 29.55 68.60 2.03 43.92 16 22 H -0.26 -9.98 7.11 99.48 0.71 -9.27 16 23 H -0.27 -10.87 7.11 99.48 0.71 -10.16 16 24 H -0.26 -9.86 7.11 99.48 0.71 -9.15 16 25 C -0.24 -10.04 9.17 22.39 0.21 -9.83 16 26 C -0.04 -1.43 9.69 22.25 0.22 -1.21 16 27 H 0.05 0.34 8.14 -2.39 -0.02 0.32 16 28 H 0.09 0.67 8.14 -2.38 -0.02 0.65 16 29 H 0.05 0.32 8.14 -2.39 -0.02 0.30 16 30 H 0.08 0.64 8.14 -2.38 -0.02 0.62 16 31 H 0.06 0.64 8.14 -2.39 -0.02 0.62 16 32 H 0.08 1.03 8.14 -2.38 -0.02 1.01 16 33 H 0.06 1.10 7.56 -2.39 -0.02 1.08 16 34 H 0.04 0.83 8.14 -2.39 -0.02 0.81 16 35 H 0.41 6.31 8.40 -92.70 -0.78 5.54 16 36 H 0.41 8.05 8.48 -92.71 -0.79 7.26 16 37 H 0.07 1.75 8.08 -2.39 -0.02 1.74 16 38 H 0.07 1.74 8.08 -2.39 -0.02 1.72 16 39 H 0.15 3.69 8.06 -2.91 -0.02 3.66 16 40 H 0.11 4.64 8.06 -2.91 -0.02 4.61 16 41 H 0.27 15.16 8.31 -92.71 -0.77 14.39 16 42 H 0.12 5.08 5.64 -2.91 -0.02 5.06 16 43 H 0.14 3.66 8.06 -2.91 -0.02 3.63 16 Total: -1.00 -73.57 367.68 1.59 -71.98 By element: Atomic # 1 Polarization: 31.95 SS G_CDS: -0.53 Total: 31.42 kcal Atomic # 6 Polarization: -21.56 SS G_CDS: 6.50 Total: -15.06 kcal Atomic # 7 Polarization: -86.07 SS G_CDS: -4.70 Total: -90.77 kcal Atomic # 8 Polarization: -39.79 SS G_CDS: -1.71 Total: -41.50 kcal Atomic # 14 Polarization: 41.89 SS G_CDS: 2.03 Total: 43.92 kcal Total: -73.57 1.59 -71.98 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000069717708.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.845 kcal (2) G-P(sol) polarization free energy of solvation -73.575 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.420 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.590 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.984 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.830 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds