Wall clock time and date at job start Tue Mar 31 2020 10:36:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 O 1.42897 * 109.46610 * 2 1 4 4 C 1.42906 * 113.99648 * 180.02562 * 3 2 1 5 5 C 1.53002 * 109.46967 * 180.02562 * 4 3 2 6 6 C 1.50699 * 109.46873 * 179.97438 * 5 4 3 7 7 O 1.21278 * 120.00056 * 359.97438 * 6 5 4 8 8 N 1.34774 * 119.99823 * 179.97438 * 6 5 4 9 9 C 1.39581 * 119.99990 * 179.97438 * 8 6 5 10 10 N 1.32276 * 119.72745 * 0.26696 * 9 8 6 11 11 C 1.31949 * 121.69079 * 180.30946 * 10 9 8 12 12 C 1.38093 * 120.95747 * 359.70619 * 11 10 9 13 13 C 1.38775 * 119.35013 * 359.97438 * 12 11 10 14 14 C 1.38801 * 118.45054 * 359.97438 * 13 12 11 15 15 O 1.35973 * 120.50125 * 179.97438 * 14 13 12 16 16 C 1.42906 * 116.99587 * 0.02562 * 15 14 13 17 17 C 1.53006 * 109.46748 * 179.97438 * 16 15 14 18 18 C 1.50699 * 109.46866 * 179.97438 * 17 16 15 19 19 H 1.08003 * 119.99962 * 359.97438 * 18 17 16 20 20 C 1.37874 * 120.00270 * 180.02562 * 18 17 16 21 21 N 1.31513 * 120.00305 * 179.97438 * 20 18 17 22 22 Si 1.86805 * 119.99832 * 359.97438 * 20 18 17 23 23 H 1.48497 * 109.46901 * 89.99815 * 22 20 18 24 24 H 1.48488 * 109.47487 * 210.00255 * 22 20 18 25 25 H 1.48503 * 109.47026 * 330.00635 * 22 20 18 26 26 H 1.09007 * 109.46754 * 180.02562 * 1 2 3 27 27 H 1.09004 * 109.46741 * 299.99182 * 1 2 3 28 28 H 1.08996 * 109.47546 * 59.99874 * 1 2 3 29 29 H 1.08996 * 109.46452 * 240.00224 * 2 1 3 30 30 H 1.08997 * 109.47117 * 120.00447 * 2 1 3 31 31 H 1.08995 * 109.47370 * 59.99792 * 4 3 2 32 32 H 1.08996 * 109.46636 * 299.99592 * 4 3 2 33 33 H 1.08995 * 109.47518 * 59.99549 * 5 4 3 34 34 H 1.09002 * 109.47042 * 299.99534 * 5 4 3 35 35 H 0.97000 * 120.00150 * 359.97438 * 8 6 5 36 36 H 1.08000 * 119.52722 * 179.72569 * 11 10 9 37 37 H 1.07997 * 120.32692 * 179.97438 * 12 11 10 38 38 H 1.08002 * 120.77560 * 180.02562 * 13 12 11 39 39 H 1.09000 * 109.47490 * 59.99648 * 16 15 14 40 40 H 1.09001 * 109.47232 * 299.99002 * 16 15 14 41 41 H 1.08993 * 109.46955 * 299.99993 * 17 16 15 42 42 H 1.09000 * 109.47050 * 59.99822 * 17 16 15 43 43 H 0.97002 * 120.00008 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4309 1.4602 -0.0006 5 6 3.8253 2.9385 0.0001 6 6 5.3276 3.0575 0.0001 7 8 6.0150 2.0584 0.0001 8 7 5.9071 4.2743 0.0002 9 6 7.2986 4.3845 0.0007 10 7 8.0432 3.2913 -0.0041 11 6 9.3614 3.3503 0.0023 12 6 10.0180 4.5652 0.0083 13 6 9.2773 5.7387 0.0071 14 6 7.8923 5.6465 -0.0008 15 8 7.1259 6.7697 -0.0018 16 6 7.8120 8.0232 0.0050 17 6 6.7914 9.1632 0.0022 18 6 7.5150 10.4851 0.0100 19 1 8.5947 10.5097 0.0168 20 6 6.7986 11.6631 0.0095 21 7 7.4300 12.8168 0.0168 22 14 4.9311 11.6206 -0.0015 23 1 4.4281 11.6049 1.3956 24 1 4.4126 12.8235 -0.7008 25 1 4.4679 10.3992 -0.7080 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5137 0.8901 28 1 -0.3634 0.5138 -0.8899 29 1 1.8933 -0.5138 -0.8900 30 1 1.8934 -0.5139 0.8899 31 1 3.8333 0.9768 -0.8907 32 1 3.8339 0.9766 0.8892 33 1 3.4229 3.4215 0.8905 34 1 3.4222 3.4225 -0.8895 35 1 5.3573 5.0734 -0.0002 36 1 9.9352 2.4354 0.0025 37 1 11.0973 4.6017 0.0139 38 1 9.7670 6.7013 0.0113 39 1 8.4418 8.0976 -0.8815 40 1 8.4325 8.0930 0.8985 41 1 6.1712 9.0933 -0.8914 42 1 6.1614 9.0890 0.8885 43 1 6.9259 13.6455 0.0161 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000076878273.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:36:54 Heat of formation + Delta-G solvation = -84.293571 kcal Electronic energy + Delta-G solvation = -24351.336246 eV Core-core repulsion = 20590.416939 eV Total energy + Delta-G solvation = -3760.919307 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 308.157 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.98714 -39.50537 -38.21507 -37.84165 -34.94005 -33.46239 -32.84203 -31.73928 -31.06909 -30.46965 -29.12584 -25.69405 -24.74333 -23.12657 -23.04395 -22.65019 -20.80433 -20.22820 -18.42935 -17.75648 -17.58066 -16.74771 -16.63802 -16.47594 -15.92428 -15.57879 -15.36229 -15.11192 -14.54763 -14.27911 -14.20933 -14.08298 -13.84296 -13.46487 -13.11370 -12.70250 -12.59175 -12.39539 -12.20837 -12.12885 -12.03490 -11.39533 -11.34823 -11.26828 -11.00373 -10.80261 -10.44804 -10.27803 -10.17426 -9.94760 -9.88828 -9.46138 -9.30543 -9.13467 -8.70775 -7.76827 -6.21494 -4.23431 1.11907 1.36508 2.58934 2.62324 3.21805 3.29759 3.32768 3.39669 3.48247 3.92698 4.30965 4.36430 4.57699 4.70249 4.76626 4.78315 4.88118 4.93079 5.03404 5.06987 5.12278 5.17209 5.25023 5.37931 5.39638 5.50817 5.52626 5.60152 5.73599 5.76519 5.77875 5.97924 6.10986 6.24452 6.33449 6.50400 6.87907 6.91554 7.10043 7.14978 7.47493 7.60352 7.94394 8.24733 8.29292 8.78524 9.38041 10.90845 Molecular weight = 308.16amu Principal moments of inertia in cm(-1) A = 0.010951 B = 0.003037 C = 0.002386 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2556.330393 B = 9218.634352 C =11733.293104 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.059 3.941 3 O -0.393 6.393 4 C 0.079 3.921 5 C -0.139 4.139 6 C 0.510 3.490 7 O -0.483 6.483 8 N -0.651 5.651 9 C 0.327 3.673 10 N -0.444 5.444 11 C 0.076 3.924 12 C -0.158 4.158 13 C -0.146 4.146 14 C 0.067 3.933 15 O -0.319 6.319 16 C 0.073 3.927 17 C -0.007 4.007 18 C -0.530 4.530 19 H 0.075 0.925 20 C 0.073 3.927 21 N -0.896 5.896 22 Si 0.881 3.119 23 H -0.275 1.275 24 H -0.286 1.286 25 H -0.263 1.263 26 H 0.070 0.930 27 H 0.063 0.937 28 H 0.063 0.937 29 H 0.049 0.951 30 H 0.049 0.951 31 H 0.059 0.941 32 H 0.059 0.941 33 H 0.105 0.895 34 H 0.105 0.895 35 H 0.425 0.575 36 H 0.157 0.843 37 H 0.136 0.864 38 H 0.147 0.853 39 H 0.059 0.941 40 H 0.059 0.941 41 H 0.028 0.972 42 H 0.024 0.976 43 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.073 -22.828 -0.043 23.622 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.018 4.018 3 O -0.312 6.312 4 C 0.002 3.998 5 C -0.179 4.179 6 C 0.295 3.705 7 O -0.353 6.353 8 N -0.300 5.300 9 C 0.095 3.905 10 N -0.159 5.159 11 C -0.080 4.080 12 C -0.179 4.179 13 C -0.173 4.173 14 C 0.016 3.984 15 O -0.232 6.232 16 C -0.001 4.001 17 C -0.045 4.045 18 C -0.567 4.567 19 H 0.093 0.907 20 C -0.130 4.130 21 N -0.533 5.533 22 Si 0.708 3.292 23 H -0.200 1.200 24 H -0.211 1.211 25 H -0.188 1.188 26 H 0.089 0.911 27 H 0.082 0.918 28 H 0.082 0.918 29 H 0.067 0.933 30 H 0.067 0.933 31 H 0.077 0.923 32 H 0.077 0.923 33 H 0.124 0.876 34 H 0.124 0.876 35 H 0.263 0.737 36 H 0.175 0.825 37 H 0.154 0.846 38 H 0.165 0.835 39 H 0.077 0.923 40 H 0.077 0.923 41 H 0.047 0.953 42 H 0.042 0.958 43 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -6.436 -24.001 -0.053 24.849 hybrid contribution -0.252 1.410 0.020 1.433 sum -6.688 -22.591 -0.033 23.560 Atomic orbital electron populations 1.21755 0.93691 1.02246 1.03205 1.22449 0.95502 0.83540 1.00283 1.87812 1.21070 1.26779 1.95588 1.22087 0.80726 0.95116 1.01839 1.21474 0.91754 0.98518 1.06195 1.20562 0.90173 0.83030 0.76700 1.90800 1.64615 1.35409 1.44499 1.43447 1.03959 1.10298 1.72250 1.17801 0.84905 0.86856 1.00973 1.67615 1.07081 1.27742 1.13508 1.22431 0.89002 0.97719 0.98893 1.21920 1.01276 0.92531 1.02222 1.21647 0.92050 1.00657 1.02904 1.19550 0.90979 0.87056 1.00846 1.86049 1.36058 1.13313 1.87816 1.23153 0.97118 0.79092 1.00701 1.19586 0.95095 0.91885 0.97931 1.20804 0.95152 0.88041 1.52743 0.90734 1.24940 0.98818 0.95208 0.94038 1.69886 1.36109 0.97508 1.49821 0.86749 0.85658 0.78015 0.78770 1.20037 1.21144 1.18764 0.91102 0.91807 0.91800 0.93291 0.93289 0.92306 0.92314 0.87631 0.87628 0.73747 0.82537 0.84638 0.83547 0.92289 0.92311 0.95349 0.95786 0.92357 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.98 10.28 37.16 0.38 -0.59 16 2 C 0.06 0.46 6.66 37.16 0.25 0.71 16 3 O -0.39 -4.05 10.34 -35.23 -0.36 -4.42 16 4 C 0.08 0.80 5.23 37.16 0.19 1.00 16 5 C -0.14 -1.34 6.07 -27.88 -0.17 -1.51 16 6 C 0.51 6.69 7.79 -10.99 -0.09 6.61 16 7 O -0.48 -7.92 14.24 5.56 0.08 -7.84 16 8 N -0.65 -8.81 5.39 -11.29 -0.06 -8.87 16 9 C 0.33 5.15 7.45 -154.43 -1.15 4.00 16 10 N -0.44 -7.13 7.88 -12.22 -0.10 -7.22 16 11 C 0.08 0.99 11.17 -17.55 -0.20 0.80 16 12 C -0.16 -1.89 10.10 -39.44 -0.40 -2.29 16 13 C -0.15 -2.03 9.14 -39.17 -0.36 -2.39 16 14 C 0.07 1.06 6.72 -38.91 -0.26 0.79 16 15 O -0.32 -5.46 9.39 -19.66 -0.18 -5.64 16 16 C 0.07 1.36 4.70 37.16 0.17 1.54 16 17 C -0.01 -0.17 4.41 -27.88 -0.12 -0.29 16 18 C -0.53 -14.21 9.66 -34.44 -0.33 -14.54 16 19 H 0.07 2.12 7.99 -52.48 -0.42 1.71 16 20 C 0.07 2.02 5.47 -17.82 -0.10 1.92 16 21 N -0.90 -26.41 13.96 55.43 0.77 -25.64 16 22 Si 0.88 20.66 27.47 -169.99 -4.67 15.99 16 23 H -0.27 -6.33 7.11 56.52 0.40 -5.93 16 24 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 25 H -0.26 -5.90 6.54 56.52 0.37 -5.53 16 26 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 27 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 28 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 29 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 30 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 31 H 0.06 0.61 8.10 -51.93 -0.42 0.19 16 32 H 0.06 0.61 8.10 -51.93 -0.42 0.19 16 33 H 0.11 0.87 8.14 -51.93 -0.42 0.45 16 34 H 0.11 0.87 8.14 -51.93 -0.42 0.45 16 35 H 0.42 4.93 8.04 -40.82 -0.33 4.60 16 36 H 0.16 1.57 8.06 -52.49 -0.42 1.15 16 37 H 0.14 1.19 8.06 -52.49 -0.42 0.77 16 38 H 0.15 1.90 6.44 -52.49 -0.34 1.57 16 39 H 0.06 1.06 7.70 -51.93 -0.40 0.66 16 40 H 0.06 1.05 7.70 -51.93 -0.40 0.66 16 41 H 0.03 0.64 7.20 -51.93 -0.37 0.26 16 42 H 0.02 0.53 7.57 -51.93 -0.39 0.14 16 43 H 0.27 7.35 8.31 -40.82 -0.34 7.01 16 LS Contribution 364.52 15.07 5.49 5.49 Total: -1.00 -32.90 364.52 -7.67 -40.57 By element: Atomic # 1 Polarization: 8.30 SS G_CDS: -6.47 Total: 1.83 kcal Atomic # 6 Polarization: -2.08 SS G_CDS: -2.17 Total: -4.25 kcal Atomic # 7 Polarization: -42.35 SS G_CDS: 0.62 Total: -41.73 kcal Atomic # 8 Polarization: -17.43 SS G_CDS: -0.47 Total: -17.90 kcal Atomic # 14 Polarization: 20.66 SS G_CDS: -4.67 Total: 15.99 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -32.90 -7.67 -40.57 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000076878273.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.726 kcal (2) G-P(sol) polarization free energy of solvation -32.899 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.626 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.668 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.567 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.294 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds