Wall clock time and date at job start Tue Mar 31 2020 10:18:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 N 1.46494 * 109.47285 * 2 1 4 4 C 1.46500 * 119.99801 * 269.99827 * 3 2 1 5 5 C 1.50702 * 109.47149 * 270.00068 * 4 3 2 6 6 H 1.08001 * 119.99988 * 359.97438 * 5 4 3 7 7 C 1.37874 * 119.99873 * 180.02562 * 5 4 3 8 8 N 1.31517 * 120.00160 * 0.02562 * 7 5 4 9 9 Si 1.86797 * 119.99714 * 179.97438 * 7 5 4 10 10 H 1.48502 * 109.47071 * 60.00328 * 9 7 5 11 11 H 1.48506 * 109.47175 * 180.02562 * 9 7 5 12 12 H 1.48497 * 109.47443 * 299.99897 * 9 7 5 13 13 C 1.34776 * 120.00437 * 89.99956 * 3 2 1 14 14 O 1.21580 * 120.00431 * 180.02562 * 13 3 2 15 15 N 1.34778 * 119.99523 * 0.27008 * 13 3 2 16 16 C 1.39936 * 119.99738 * 175.04605 * 15 13 3 17 17 C 1.38812 * 120.01350 * 214.83683 * 16 15 13 18 18 C 1.38648 * 119.98740 * 179.76436 * 17 16 15 19 19 O 1.35898 * 119.99701 * 180.22932 * 18 17 16 20 20 C 1.42894 * 116.99943 * 180.25582 * 19 18 17 21 21 C 1.38692 * 120.00946 * 0.48834 * 18 17 16 22 22 C 1.38682 * 120.03028 * 359.76522 * 21 18 17 23 23 O 1.35893 * 119.99438 * 179.97438 * 22 21 18 24 24 C 1.42902 * 116.99984 * 0.02562 * 23 22 21 25 25 C 1.38645 * 120.01617 * 0.02562 * 22 21 18 26 26 H 1.08998 * 109.47176 * 180.02562 * 1 2 3 27 27 H 1.09002 * 109.46903 * 300.00680 * 1 2 3 28 28 H 1.09002 * 109.46890 * 59.99582 * 1 2 3 29 29 H 1.09002 * 109.46903 * 239.99320 * 2 1 3 30 30 H 1.09005 * 109.46296 * 119.99989 * 2 1 3 31 31 H 1.09001 * 109.47374 * 30.00431 * 4 3 2 32 32 H 1.09006 * 109.47139 * 150.00132 * 4 3 2 33 33 H 0.97001 * 120.00055 * 180.02562 * 8 7 5 34 34 H 0.97002 * 120.00561 * 355.04961 * 15 13 3 35 35 H 1.08000 * 120.00929 * 0.02562 * 17 16 15 36 36 H 1.08999 * 109.47377 * 60.00834 * 20 19 18 37 37 H 1.09005 * 109.47171 * 180.02562 * 20 19 18 38 38 H 1.08999 * 109.47443 * 300.00315 * 20 19 18 39 39 H 1.08001 * 119.98084 * 179.73879 * 21 18 17 40 40 H 1.09008 * 109.46638 * 299.99885 * 24 23 22 41 41 H 1.08998 * 109.47399 * 59.99298 * 24 23 22 42 42 H 1.08996 * 109.47336 * 180.02562 * 24 23 22 43 43 H 1.07996 * 120.00878 * 179.97438 * 25 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3811 0.0000 4 6 2.2626 2.0717 -1.2688 5 6 3.6859 1.8348 -1.7038 6 1 4.3430 1.2307 -1.0957 7 6 4.1495 2.3902 -2.8775 8 7 3.3498 3.1272 -3.6171 9 14 5.9139 2.0972 -3.4163 10 1 6.1417 0.6406 -3.5942 11 1 6.1619 2.7981 -4.7018 12 1 6.8411 2.6204 -2.3810 13 6 2.2431 2.0166 1.1671 14 8 2.6479 3.1630 1.1671 15 7 2.0236 1.3794 2.3343 16 6 2.3544 2.0009 3.5437 17 6 2.8273 1.2439 4.6068 18 6 3.1594 1.8609 5.8032 19 8 3.6268 1.1207 6.8426 20 6 3.9440 1.8211 8.0470 21 6 3.0097 3.2328 5.9411 22 6 2.5324 3.9890 4.8811 23 8 2.3855 5.3331 5.0172 24 6 2.7425 5.9002 6.2793 25 6 2.2040 3.3738 3.6828 26 1 -0.3633 -1.0276 0.0005 27 1 -0.3633 0.5140 0.8899 28 1 -0.3633 0.5139 -0.8900 29 1 1.8934 -0.5140 -0.8899 30 1 1.8933 -0.5139 0.8901 31 1 1.5818 1.6877 -2.0284 32 1 2.0957 3.1410 -1.1385 33 1 3.6759 3.5176 -4.4430 34 1 1.6365 0.4900 2.3362 35 1 2.9404 0.1751 4.5008 36 1 3.0514 2.3217 8.4221 37 1 4.3056 1.1143 8.7940 38 1 4.7176 2.5617 7.8437 39 1 3.2647 3.7124 6.8746 40 1 2.1281 5.4575 7.0634 41 1 3.7939 5.6982 6.4842 42 1 2.5774 6.9773 6.2535 43 1 1.8318 3.9627 2.8575 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000078452803.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:18:34 Heat of formation + Delta-G solvation = -63.646193 kcal Electronic energy + Delta-G solvation = -25595.449188 eV Core-core repulsion = 21835.425219 eV Total energy + Delta-G solvation = -3760.023970 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 308.157 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.70655 -39.64718 -38.81739 -36.91145 -35.27700 -33.86182 -32.61994 -30.29459 -30.11432 -29.26036 -28.00087 -26.74299 -26.66195 -23.29153 -23.04380 -22.45355 -21.45001 -19.49398 -18.83301 -17.48244 -16.90062 -16.38566 -16.28995 -16.02749 -15.75037 -15.55665 -15.53560 -14.83165 -14.67917 -14.58263 -14.08667 -13.62505 -13.36128 -13.00044 -12.83546 -12.53167 -12.39497 -12.27492 -12.04050 -11.72842 -11.67693 -11.41520 -11.27064 -11.17402 -10.97480 -10.86664 -10.73103 -10.50614 -10.09579 -9.69531 -9.54004 -9.20721 -8.39824 -8.04241 -7.89376 -7.60782 -6.01076 -4.05495 1.40468 1.60691 2.86423 3.24829 3.34883 3.39261 3.41798 3.49058 3.67991 4.05612 4.40082 4.52574 4.79685 4.90301 4.93299 4.94381 5.02653 5.15235 5.22790 5.26774 5.30154 5.33069 5.34282 5.48931 5.57625 5.63924 5.73088 5.95080 6.14329 6.20421 6.27743 6.40942 6.45837 6.53713 6.87342 7.09397 7.14605 7.37539 7.52259 7.55925 7.68435 7.96822 8.26265 8.58306 8.94965 9.24718 9.59723 11.06842 Molecular weight = 308.16amu Principal moments of inertia in cm(-1) A = 0.014703 B = 0.003557 C = 0.003360 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1903.963356 B = 7869.204753 C = 8330.612306 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.105 3.895 3 N -0.605 5.605 4 C 0.261 3.739 5 C -0.527 4.527 6 H 0.057 0.943 7 C 0.062 3.938 8 N -0.895 5.895 9 Si 0.898 3.102 10 H -0.277 1.277 11 H -0.286 1.286 12 H -0.277 1.277 13 C 0.698 3.302 14 O -0.561 6.561 15 N -0.692 5.692 16 C 0.256 3.744 17 C -0.223 4.223 18 C 0.178 3.822 19 O -0.315 6.315 20 C 0.029 3.971 21 C -0.320 4.320 22 C 0.180 3.820 23 O -0.309 6.309 24 C 0.029 3.971 25 C -0.187 4.187 26 H 0.061 0.939 27 H 0.050 0.950 28 H 0.063 0.937 29 H 0.087 0.913 30 H 0.059 0.941 31 H 0.035 0.965 32 H 0.045 0.955 33 H 0.264 0.736 34 H 0.405 0.595 35 H 0.132 0.868 36 H 0.053 0.947 37 H 0.098 0.902 38 H 0.054 0.946 39 H 0.130 0.870 40 H 0.052 0.948 41 H 0.053 0.947 42 H 0.099 0.901 43 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.299 -3.785 21.591 22.338 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C -0.019 4.019 3 N -0.340 5.340 4 C 0.142 3.858 5 C -0.566 4.566 6 H 0.075 0.925 7 C -0.140 4.140 8 N -0.534 5.534 9 Si 0.726 3.274 10 H -0.203 1.203 11 H -0.212 1.212 12 H -0.202 1.202 13 C 0.400 3.600 14 O -0.437 6.437 15 N -0.342 5.342 16 C 0.158 3.842 17 C -0.245 4.245 18 C 0.132 3.868 19 O -0.228 6.228 20 C -0.066 4.066 21 C -0.340 4.340 22 C 0.134 3.866 23 O -0.222 6.222 24 C -0.067 4.067 25 C -0.208 4.208 26 H 0.080 0.920 27 H 0.069 0.931 28 H 0.082 0.918 29 H 0.106 0.894 30 H 0.077 0.923 31 H 0.053 0.947 32 H 0.063 0.937 33 H 0.073 0.927 34 H 0.242 0.758 35 H 0.150 0.850 36 H 0.072 0.928 37 H 0.116 0.884 38 H 0.073 0.927 39 H 0.148 0.852 40 H 0.071 0.929 41 H 0.072 0.928 42 H 0.117 0.883 43 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges -4.041 -2.908 21.120 21.698 hybrid contribution 1.008 -0.445 0.060 1.104 sum -3.033 -3.353 21.179 21.656 Atomic orbital electron populations 1.22263 0.96640 1.01524 1.02594 1.21397 0.93573 0.84328 1.02625 1.47625 1.66953 1.13259 1.06155 1.19236 0.96206 0.93531 0.76834 1.21427 0.96999 1.31959 1.06222 0.92515 1.24913 0.97804 0.94907 0.96389 1.69920 1.35730 1.33378 1.14397 0.86564 0.84897 0.78201 0.77785 1.20284 1.21194 1.20205 1.15928 0.79198 0.84893 0.80023 1.90915 1.51226 1.16224 1.85299 1.42970 1.66742 1.20901 1.03550 1.16720 0.92357 0.90835 0.84298 1.19834 1.11829 1.00684 0.92111 1.18196 0.92495 0.88845 0.87222 1.86054 1.79406 1.36202 1.21161 1.23019 1.00228 0.98396 0.84988 1.21087 1.17827 0.94000 1.01127 1.18458 0.92998 0.82164 0.92991 1.86135 1.81680 1.18915 1.35484 1.23029 0.99995 0.99254 0.84403 1.20489 1.09185 0.93907 0.97225 0.92039 0.93059 0.91752 0.89443 0.92315 0.94741 0.93671 0.92676 0.75826 0.84994 0.92796 0.88356 0.92736 0.85200 0.92921 0.92812 0.88288 0.82836 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.24 10.24 37.16 0.38 -1.86 16 2 C 0.11 1.65 5.86 -4.04 -0.02 1.63 16 3 N -0.61 -12.81 2.46 -180.80 -0.44 -13.26 16 4 C 0.26 6.81 5.16 -5.19 -0.03 6.78 16 5 C -0.53 -15.05 9.39 -34.44 -0.32 -15.37 16 6 H 0.06 1.63 7.81 -52.49 -0.41 1.22 16 7 C 0.06 1.78 5.46 -17.82 -0.10 1.68 16 8 N -0.90 -26.71 13.29 55.43 0.74 -25.97 16 9 Si 0.90 22.15 29.54 -169.99 -5.02 17.13 16 10 H -0.28 -6.62 7.11 56.52 0.40 -6.21 16 11 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 12 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 13 C 0.70 15.08 8.12 -86.92 -0.71 14.37 16 14 O -0.56 -14.58 13.35 5.30 0.07 -14.51 16 15 N -0.69 -11.62 5.17 -14.25 -0.07 -11.69 16 16 C 0.26 4.29 6.29 -83.74 -0.53 3.76 16 17 C -0.22 -3.24 9.90 -39.22 -0.39 -3.63 16 18 C 0.18 2.45 6.68 -39.26 -0.26 2.19 16 19 O -0.32 -3.78 10.49 -19.42 -0.20 -3.98 16 20 C 0.03 0.22 9.81 101.05 0.99 1.21 16 21 C -0.32 -4.23 8.02 -39.25 -0.31 -4.54 16 22 C 0.18 2.83 6.68 -39.27 -0.26 2.57 16 23 O -0.31 -4.56 10.49 -19.40 -0.20 -4.76 16 24 C 0.03 0.26 9.81 101.05 0.99 1.25 16 25 C -0.19 -3.38 8.63 -39.22 -0.34 -3.72 16 26 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 27 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 28 H 0.06 0.94 8.14 -51.93 -0.42 0.51 16 29 H 0.09 1.42 8.07 -51.93 -0.42 1.00 16 30 H 0.06 0.76 6.43 -51.93 -0.33 0.42 16 31 H 0.03 0.90 8.07 -51.93 -0.42 0.48 16 32 H 0.05 1.33 7.42 -51.93 -0.39 0.95 16 33 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 34 H 0.40 5.36 6.62 -40.82 -0.27 5.09 16 35 H 0.13 1.68 8.06 -52.49 -0.42 1.25 16 36 H 0.05 0.35 7.66 -51.93 -0.40 -0.05 16 37 H 0.10 0.52 8.14 -51.93 -0.42 0.10 16 38 H 0.05 0.38 7.66 -51.93 -0.40 -0.01 16 39 H 0.13 1.32 4.52 -52.49 -0.24 1.08 16 40 H 0.05 0.40 7.66 -51.92 -0.40 0.00 16 41 H 0.05 0.45 7.66 -51.93 -0.40 0.05 16 42 H 0.10 0.71 8.14 -51.93 -0.42 0.29 16 43 H 0.15 3.20 6.21 -52.49 -0.33 2.87 16 LS Contribution 359.02 15.07 5.41 5.41 Total: -1.00 -35.05 359.02 -6.70 -41.75 By element: Atomic # 1 Polarization: 9.61 SS G_CDS: -6.06 Total: 3.54 kcal Atomic # 6 Polarization: 7.24 SS G_CDS: -0.91 Total: 6.33 kcal Atomic # 7 Polarization: -51.14 SS G_CDS: 0.22 Total: -50.92 kcal Atomic # 8 Polarization: -22.91 SS G_CDS: -0.34 Total: -23.25 kcal Atomic # 14 Polarization: 22.15 SS G_CDS: -5.02 Total: 17.13 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -35.05 -6.70 -41.75 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000078452803.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.895 kcal (2) G-P(sol) polarization free energy of solvation -35.052 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.948 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.699 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.751 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.646 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds