Wall clock time and date at job start Tue Mar 31 2020 10:18:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 N 1.46494 * 109.47285 * 2 1 4 4 C 1.46500 * 119.99801 * 269.99827 * 3 2 1 5 5 C 1.50702 * 109.47149 * 270.00068 * 4 3 2 6 6 H 1.08001 * 119.99988 * 359.97438 * 5 4 3 7 7 C 1.37874 * 119.99873 * 180.02562 * 5 4 3 8 8 N 1.31517 * 120.00160 * 0.02562 * 7 5 4 9 9 Si 1.86797 * 119.99714 * 179.97438 * 7 5 4 10 10 H 1.48502 * 109.47071 * 60.00328 * 9 7 5 11 11 H 1.48506 * 109.47175 * 180.02562 * 9 7 5 12 12 H 1.48497 * 109.47443 * 299.99897 * 9 7 5 13 13 C 1.34776 * 120.00437 * 89.99956 * 3 2 1 14 14 O 1.21580 * 120.00431 * 180.02562 * 13 3 2 15 15 N 1.34778 * 119.99523 * 0.27008 * 13 3 2 16 16 C 1.39936 * 119.99738 * 175.04605 * 15 13 3 17 17 C 1.38812 * 120.01350 * 214.83683 * 16 15 13 18 18 C 1.38648 * 119.98740 * 179.76436 * 17 16 15 19 19 O 1.35898 * 119.99701 * 180.22932 * 18 17 16 20 20 C 1.42894 * 116.99943 * 180.25582 * 19 18 17 21 21 C 1.38692 * 120.00946 * 0.48834 * 18 17 16 22 22 C 1.38682 * 120.03028 * 359.76522 * 21 18 17 23 23 O 1.35893 * 119.99438 * 179.97438 * 22 21 18 24 24 C 1.42902 * 116.99984 * 0.02562 * 23 22 21 25 25 C 1.38645 * 120.01617 * 0.02562 * 22 21 18 26 26 H 1.08998 * 109.47176 * 180.02562 * 1 2 3 27 27 H 1.09002 * 109.46903 * 300.00680 * 1 2 3 28 28 H 1.09002 * 109.46890 * 59.99582 * 1 2 3 29 29 H 1.09002 * 109.46903 * 239.99320 * 2 1 3 30 30 H 1.09005 * 109.46296 * 119.99989 * 2 1 3 31 31 H 1.09001 * 109.47374 * 30.00431 * 4 3 2 32 32 H 1.09006 * 109.47139 * 150.00132 * 4 3 2 33 33 H 0.97001 * 120.00055 * 180.02562 * 8 7 5 34 34 H 0.97002 * 120.00561 * 355.04961 * 15 13 3 35 35 H 1.08000 * 120.00929 * 0.02562 * 17 16 15 36 36 H 1.08999 * 109.47377 * 60.00834 * 20 19 18 37 37 H 1.09005 * 109.47171 * 180.02562 * 20 19 18 38 38 H 1.08999 * 109.47443 * 300.00315 * 20 19 18 39 39 H 1.08001 * 119.98084 * 179.73879 * 21 18 17 40 40 H 1.09008 * 109.46638 * 299.99885 * 24 23 22 41 41 H 1.08998 * 109.47399 * 59.99298 * 24 23 22 42 42 H 1.08996 * 109.47336 * 180.02562 * 24 23 22 43 43 H 1.07996 * 120.00878 * 179.97438 * 25 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3811 0.0000 4 6 2.2626 2.0717 -1.2688 5 6 3.6859 1.8348 -1.7038 6 1 4.3430 1.2307 -1.0957 7 6 4.1495 2.3902 -2.8775 8 7 3.3498 3.1272 -3.6171 9 14 5.9139 2.0972 -3.4163 10 1 6.1417 0.6406 -3.5942 11 1 6.1619 2.7981 -4.7018 12 1 6.8411 2.6204 -2.3810 13 6 2.2431 2.0166 1.1671 14 8 2.6479 3.1630 1.1671 15 7 2.0236 1.3794 2.3343 16 6 2.3544 2.0009 3.5437 17 6 2.8273 1.2439 4.6068 18 6 3.1594 1.8609 5.8032 19 8 3.6268 1.1207 6.8426 20 6 3.9440 1.8211 8.0470 21 6 3.0097 3.2328 5.9411 22 6 2.5324 3.9890 4.8811 23 8 2.3855 5.3331 5.0172 24 6 2.7425 5.9002 6.2793 25 6 2.2040 3.3738 3.6828 26 1 -0.3633 -1.0276 0.0005 27 1 -0.3633 0.5140 0.8899 28 1 -0.3633 0.5139 -0.8900 29 1 1.8934 -0.5140 -0.8899 30 1 1.8933 -0.5139 0.8901 31 1 1.5818 1.6877 -2.0284 32 1 2.0957 3.1410 -1.1385 33 1 3.6759 3.5176 -4.4430 34 1 1.6365 0.4900 2.3362 35 1 2.9404 0.1751 4.5008 36 1 3.0514 2.3217 8.4221 37 1 4.3056 1.1143 8.7940 38 1 4.7176 2.5617 7.8437 39 1 3.2647 3.7124 6.8746 40 1 2.1281 5.4575 7.0634 41 1 3.7939 5.6982 6.4842 42 1 2.5774 6.9773 6.2535 43 1 1.8318 3.9627 2.8575 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000078452803.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:18:33 Heat of formation + Delta-G solvation = -87.993475 kcal Electronic energy + Delta-G solvation = -25596.504966 eV Core-core repulsion = 21835.425219 eV Total energy + Delta-G solvation = -3761.079747 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 308.157 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.96983 -41.02699 -39.78382 -38.18954 -36.92544 -35.38717 -34.58571 -31.65549 -31.29566 -30.55649 -29.03197 -28.38218 -27.47552 -25.19336 -24.39549 -23.59637 -22.75666 -20.96382 -20.01255 -19.01302 -18.51919 -17.87596 -17.61716 -17.01200 -16.96528 -16.76274 -16.51402 -16.37812 -16.21467 -15.76257 -15.57552 -15.09203 -14.60459 -14.51035 -14.15193 -13.79655 -13.59542 -13.37061 -13.27834 -13.23209 -13.08403 -12.68819 -12.52292 -12.45014 -12.33896 -12.22699 -12.18251 -12.03797 -11.89777 -11.72133 -11.02268 -10.71781 -10.62499 -9.58532 -9.10154 -9.03724 -8.20561 -6.35164 0.22063 0.44210 1.36732 1.41589 1.47718 1.56172 2.11865 2.33100 2.35867 2.41995 2.75426 3.03819 3.09992 3.94718 3.95939 4.06875 4.10387 4.26735 4.34162 4.36760 4.37124 4.42708 4.43145 4.45641 4.58063 4.70011 4.76124 4.82011 4.95186 4.96581 5.01874 5.18394 5.21315 5.25407 5.31144 5.37037 5.57801 5.79492 5.80259 6.05579 6.07777 6.21598 6.51988 6.73219 7.02675 7.31444 7.60859 8.86026 Molecular weight = 308.16amu Principal moments of inertia in cm(-1) A = 0.014703 B = 0.003557 C = 0.003360 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1903.963356 B = 7869.204753 C = 8330.612306 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.097 3.903 3 N -0.610 5.610 4 C 0.279 3.721 5 C -0.544 4.544 6 H 0.052 0.948 7 C 0.009 3.991 8 N -0.928 5.928 9 Si 0.966 3.034 10 H -0.259 1.259 11 H -0.277 1.277 12 H -0.281 1.281 13 C 0.694 3.306 14 O -0.616 6.616 15 N -0.672 5.672 16 C 0.238 3.762 17 C -0.221 4.221 18 C 0.184 3.816 19 O -0.322 6.322 20 C 0.015 3.985 21 C -0.306 4.306 22 C 0.175 3.825 23 O -0.338 6.338 24 C 0.016 3.984 25 C -0.222 4.222 26 H 0.100 0.900 27 H 0.054 0.946 28 H 0.042 0.958 29 H 0.082 0.918 30 H 0.093 0.907 31 H 0.030 0.970 32 H -0.002 1.002 33 H 0.267 0.733 34 H 0.422 0.578 35 H 0.153 0.847 36 H 0.069 0.931 37 H 0.124 0.876 38 H 0.062 0.938 39 H 0.165 0.835 40 H 0.074 0.926 41 H 0.066 0.934 42 H 0.118 0.882 43 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.278 -5.789 24.427 25.317 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.025 4.025 3 N -0.344 5.344 4 C 0.158 3.842 5 C -0.583 4.583 6 H 0.070 0.930 7 C -0.190 4.190 8 N -0.567 5.567 9 Si 0.791 3.209 10 H -0.183 1.183 11 H -0.202 1.202 12 H -0.207 1.207 13 C 0.396 3.604 14 O -0.495 6.495 15 N -0.322 5.322 16 C 0.141 3.859 17 C -0.242 4.242 18 C 0.137 3.863 19 O -0.235 6.235 20 C -0.079 4.079 21 C -0.326 4.326 22 C 0.128 3.872 23 O -0.251 6.251 24 C -0.078 4.078 25 C -0.244 4.244 26 H 0.119 0.881 27 H 0.073 0.927 28 H 0.061 0.939 29 H 0.100 0.900 30 H 0.112 0.888 31 H 0.048 0.952 32 H 0.016 0.984 33 H 0.076 0.924 34 H 0.263 0.737 35 H 0.171 0.829 36 H 0.087 0.913 37 H 0.142 0.858 38 H 0.081 0.919 39 H 0.182 0.818 40 H 0.093 0.907 41 H 0.084 0.916 42 H 0.136 0.864 43 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -3.051 -4.980 24.016 24.716 hybrid contribution 0.677 0.232 -0.622 0.948 sum -2.375 -4.748 23.394 23.989 Atomic orbital electron populations 1.22188 0.94384 1.03751 1.01747 1.21757 0.95406 0.81249 1.04063 1.47494 1.67204 1.15182 1.04558 1.18659 0.95311 0.91344 0.78919 1.21700 0.97965 1.32112 1.06494 0.93012 1.25823 1.02298 0.94453 0.96410 1.70041 1.37777 1.34077 1.14822 0.85493 0.79089 0.79086 0.77276 1.18312 1.20211 1.20703 1.16094 0.78793 0.84379 0.81130 1.90881 1.53568 1.18740 1.86295 1.42549 1.66266 1.21200 1.02231 1.16847 0.93759 0.90660 0.84656 1.19969 1.11047 1.01504 0.91712 1.18284 0.91414 0.89042 0.87561 1.86063 1.78786 1.36799 1.21845 1.23423 1.01317 0.99516 0.83661 1.21338 1.16040 0.93804 1.01455 1.18499 0.92934 0.82934 0.92812 1.86107 1.81883 1.18551 1.38580 1.23420 1.01182 1.00326 0.82846 1.20355 1.11817 0.94687 0.97531 0.88141 0.92684 0.93868 0.89993 0.88841 0.95225 0.98430 0.92383 0.73695 0.82904 0.91252 0.85770 0.91906 0.81769 0.90733 0.91559 0.86424 0.86958 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.05 10.24 71.98 0.74 -3.31 16 2 C 0.10 3.00 5.86 86.38 0.51 3.50 16 3 N -0.61 -26.85 2.46 -844.18 -2.07 -28.92 16 4 C 0.28 15.42 5.16 85.63 0.44 15.86 16 5 C -0.54 -32.11 9.39 25.60 0.24 -31.87 16 6 H 0.05 3.03 7.81 -2.91 -0.02 3.01 16 7 C 0.01 0.54 5.46 84.65 0.46 1.00 16 8 N -0.93 -57.00 13.29 21.45 0.28 -56.71 16 9 Si 0.97 45.91 29.54 68.60 2.03 47.94 16 10 H -0.26 -11.46 7.11 99.48 0.71 -10.75 16 11 H -0.28 -12.66 7.11 99.48 0.71 -11.95 16 12 H -0.28 -13.51 7.11 99.48 0.71 -12.80 16 13 C 0.69 31.50 8.12 179.05 1.45 32.95 16 14 O -0.62 -34.49 13.35 -3.97 -0.05 -34.54 16 15 N -0.67 -22.85 5.17 -317.28 -1.64 -24.49 16 16 C 0.24 8.09 6.29 38.12 0.24 8.33 16 17 C -0.22 -6.08 9.90 22.51 0.22 -5.86 16 18 C 0.18 4.59 6.68 22.48 0.15 4.74 16 19 O -0.32 -6.57 10.49 -92.40 -0.97 -7.54 16 20 C 0.01 0.16 9.81 113.37 1.11 1.28 16 21 C -0.31 -7.43 8.02 22.48 0.18 -7.25 16 22 C 0.17 5.54 6.68 22.47 0.15 5.69 16 23 O -0.34 -10.04 10.49 -92.35 -0.97 -11.01 16 24 C 0.02 0.27 9.81 113.37 1.11 1.38 16 25 C -0.22 -8.52 8.63 22.50 0.19 -8.33 16 26 H 0.10 1.75 8.14 -2.39 -0.02 1.73 16 27 H 0.05 1.33 8.14 -2.39 -0.02 1.31 16 28 H 0.04 1.26 8.14 -2.39 -0.02 1.24 16 29 H 0.08 2.63 8.07 -2.39 -0.02 2.61 16 30 H 0.09 2.21 6.43 -2.38 -0.02 2.19 16 31 H 0.03 1.64 8.07 -2.39 -0.02 1.62 16 32 H 0.00 -0.16 7.42 -2.38 -0.02 -0.17 16 33 H 0.27 15.42 8.31 -92.71 -0.77 14.65 16 34 H 0.42 10.70 6.62 -92.71 -0.61 10.09 16 35 H 0.15 3.47 8.06 -2.91 -0.02 3.45 16 36 H 0.07 0.58 7.66 -2.39 -0.02 0.56 16 37 H 0.12 0.75 8.14 -2.38 -0.02 0.73 16 38 H 0.06 0.62 7.66 -2.39 -0.02 0.60 16 39 H 0.17 2.70 4.52 -2.91 -0.01 2.69 16 40 H 0.07 0.90 7.66 -2.38 -0.02 0.88 16 41 H 0.07 0.93 7.66 -2.39 -0.02 0.91 16 42 H 0.12 1.47 8.14 -2.39 -0.02 1.45 16 43 H 0.11 5.21 6.21 -2.91 -0.02 5.19 16 Total: -1.00 -82.16 359.02 4.23 -77.93 By element: Atomic # 1 Polarization: 18.81 SS G_CDS: 0.42 Total: 19.23 kcal Atomic # 6 Polarization: 10.91 SS G_CDS: 7.20 Total: 18.11 kcal Atomic # 7 Polarization: -106.70 SS G_CDS: -3.43 Total: -110.13 kcal Atomic # 8 Polarization: -51.10 SS G_CDS: -1.99 Total: -53.09 kcal Atomic # 14 Polarization: 45.91 SS G_CDS: 2.03 Total: 47.94 kcal Total: -82.16 4.23 -77.93 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000078452803.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.060 kcal (2) G-P(sol) polarization free energy of solvation -82.160 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.220 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.226 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.933 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.993 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds