Wall clock time and date at job start Tue Mar 31 2020 10:18:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 N 1.46506 * 109.47131 * 2 1 4 4 C 1.46496 * 120.00236 * 270.00225 * 3 2 1 5 5 C 1.50705 * 109.47040 * 270.00042 * 4 3 2 6 6 H 1.07993 * 119.99660 * 359.97438 * 5 4 3 7 7 C 1.37874 * 119.99761 * 180.02562 * 5 4 3 8 8 N 1.31516 * 119.99661 * 179.97438 * 7 5 4 9 9 Si 1.86801 * 120.00306 * 359.97438 * 7 5 4 10 10 H 1.48493 * 109.47103 * 90.00264 * 9 7 5 11 11 H 1.48497 * 109.46943 * 210.00376 * 9 7 5 12 12 H 1.48500 * 109.46706 * 330.00091 * 9 7 5 13 13 C 1.34782 * 119.99676 * 89.99640 * 3 2 1 14 14 O 1.21593 * 119.99450 * 179.97438 * 13 3 2 15 15 N 1.34769 * 120.00180 * 0.27938 * 13 3 2 16 16 C 1.40377 * 120.00005 * 175.23515 * 15 13 3 17 17 C 1.38675 * 120.02743 * 34.57976 * 16 15 13 18 18 C 1.38194 * 120.03555 * 179.79178 * 17 16 15 19 19 C 1.38724 * 120.10268 * 0.45455 * 18 17 16 20 20 O 1.35974 * 119.96652 * 179.76808 * 19 18 17 21 21 C 1.42901 * 116.99876 * 0.02917 * 20 19 18 22 22 C 1.38674 * 120.06771 * 359.79747 * 19 18 17 23 23 C 1.38523 * 119.96056 * 359.97244 * 22 19 18 24 24 O 1.35972 * 120.05333 * 180.02562 * 23 22 19 25 25 C 1.42901 * 116.99971 * 359.97438 * 24 23 22 26 26 H 1.09004 * 109.47455 * 299.99857 * 1 2 3 27 27 H 1.08997 * 109.47252 * 59.99963 * 1 2 3 28 28 H 1.09002 * 109.47054 * 179.97438 * 1 2 3 29 29 H 1.09004 * 109.47455 * 240.00143 * 2 1 3 30 30 H 1.09005 * 109.47098 * 119.99765 * 2 1 3 31 31 H 1.09000 * 109.47022 * 29.99658 * 4 3 2 32 32 H 1.08995 * 109.47456 * 149.99865 * 4 3 2 33 33 H 0.97001 * 120.00176 * 179.97438 * 8 7 5 34 34 H 0.97000 * 120.00509 * 355.23915 * 15 13 3 35 35 H 1.08000 * 119.98458 * 0.02562 * 17 16 15 36 36 H 1.07996 * 119.94964 * 180.23205 * 18 17 16 37 37 H 1.09001 * 109.46957 * 179.97438 * 21 20 19 38 38 H 1.09005 * 109.46986 * 299.99552 * 21 20 19 39 39 H 1.08999 * 109.47088 * 59.99974 * 21 20 19 40 40 H 1.07998 * 120.02248 * 179.97438 * 22 19 18 41 41 H 1.09005 * 109.46737 * 59.99932 * 25 24 23 42 42 H 1.09003 * 109.47327 * 179.97438 * 25 24 23 43 43 H 1.08989 * 109.47339 * 299.99924 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.2624 2.0719 -1.2687 5 6 3.6857 1.8351 -1.7037 6 1 4.3427 1.2310 -1.0958 7 6 4.1493 2.3906 -2.8774 8 7 5.3915 2.1844 -3.2568 9 14 3.0130 3.4362 -3.9286 10 1 3.1156 4.8563 -3.5067 11 1 3.4066 3.3139 -5.3552 12 1 1.6134 2.9695 -3.7595 13 6 2.2428 2.0166 1.1673 14 8 2.6486 3.1628 1.1672 15 7 2.0235 1.3794 2.3344 16 6 2.3515 2.0045 3.5478 17 6 2.2078 3.3772 3.6823 18 6 2.5266 3.9921 4.8781 19 6 2.9998 3.2395 5.9431 20 8 3.3171 3.8480 7.1169 21 6 3.1379 5.2642 7.1826 22 6 3.1501 1.8672 5.8116 23 6 2.8268 1.2473 4.6157 24 8 2.9730 -0.0982 4.4848 25 6 3.4657 -0.8108 5.6212 26 1 -0.3634 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8899 28 1 -0.3633 -1.0277 -0.0005 29 1 1.8933 -0.5138 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 1.5816 1.6878 -2.0283 32 1 2.0954 3.1411 -1.1383 33 1 5.7176 2.5749 -4.0827 34 1 1.6390 0.4889 2.3361 35 1 1.8430 3.9655 2.8534 36 1 2.4106 5.0607 4.9826 37 1 3.4267 5.6215 8.1711 38 1 3.7590 5.7445 6.4265 39 1 2.0909 5.5068 7.0006 40 1 3.5189 1.2820 6.6410 41 1 2.7852 -0.6704 6.4611 42 1 3.5339 -1.8723 5.3829 43 1 4.4531 -0.4334 5.8866 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000078457023.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:18:38 Heat of formation + Delta-G solvation = -58.968583 kcal Electronic energy + Delta-G solvation = -25845.646676 eV Core-core repulsion = 22085.825543 eV Total energy + Delta-G solvation = -3759.821133 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 308.157 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.75898 -39.52434 -38.89070 -36.68402 -35.31059 -34.02856 -32.55112 -30.46981 -30.30653 -29.34572 -27.67279 -27.33170 -26.61341 -23.21345 -22.93943 -22.19881 -21.49946 -19.27010 -18.78833 -17.81237 -16.97604 -16.74934 -16.63957 -16.12061 -15.93380 -15.55914 -15.09275 -14.83841 -14.71606 -14.04062 -13.96731 -13.63223 -13.42390 -13.02815 -12.83835 -12.62457 -12.46026 -12.37886 -12.23955 -11.86746 -11.67402 -11.64159 -11.41762 -11.14324 -10.98503 -10.82234 -10.64322 -10.46559 -10.14966 -9.65608 -9.46999 -9.23648 -8.54711 -8.50433 -7.80088 -7.30517 -6.04138 -4.02411 1.42698 1.48023 3.06571 3.12742 3.31986 3.36165 3.38708 3.40603 3.65722 4.04686 4.39705 4.43488 4.83453 4.94859 4.97677 5.04524 5.06424 5.07703 5.24439 5.28203 5.31287 5.33065 5.40281 5.51806 5.53977 5.62499 5.70870 5.92060 5.97743 6.15027 6.24579 6.40321 6.46392 6.56964 6.63999 6.90846 6.97334 7.21393 7.31573 7.49237 7.56826 7.68088 8.52636 8.54697 9.00319 9.23031 9.56325 11.09482 Molecular weight = 308.16amu Principal moments of inertia in cm(-1) A = 0.015563 B = 0.003839 C = 0.003453 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1798.713059 B = 7292.544533 C = 8107.163036 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.106 3.894 3 N -0.602 5.602 4 C 0.232 3.768 5 C -0.527 4.527 6 H 0.074 0.926 7 C 0.072 3.928 8 N -0.898 5.898 9 Si 0.876 3.124 10 H -0.274 1.274 11 H -0.286 1.286 12 H -0.266 1.266 13 C 0.703 3.297 14 O -0.574 6.574 15 N -0.685 5.685 16 C 0.119 3.881 17 C -0.047 4.047 18 C -0.222 4.222 19 C 0.138 3.862 20 O -0.321 6.321 21 C 0.028 3.972 22 C -0.224 4.224 23 C 0.132 3.868 24 O -0.312 6.312 25 C 0.029 3.971 26 H 0.051 0.949 27 H 0.060 0.940 28 H 0.062 0.938 29 H 0.088 0.912 30 H 0.064 0.936 31 H 0.031 0.969 32 H 0.037 0.963 33 H 0.264 0.736 34 H 0.404 0.596 35 H 0.154 0.846 36 H 0.130 0.870 37 H 0.096 0.904 38 H 0.057 0.943 39 H 0.055 0.945 40 H 0.136 0.864 41 H 0.055 0.945 42 H 0.099 0.901 43 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.459 -2.996 19.718 22.074 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C -0.019 4.019 3 N -0.337 5.337 4 C 0.111 3.889 5 C -0.566 4.566 6 H 0.092 0.908 7 C -0.130 4.130 8 N -0.537 5.537 9 Si 0.703 3.297 10 H -0.199 1.199 11 H -0.211 1.211 12 H -0.191 1.191 13 C 0.405 3.595 14 O -0.451 6.451 15 N -0.335 5.335 16 C 0.023 3.977 17 C -0.067 4.067 18 C -0.241 4.241 19 C 0.092 3.908 20 O -0.234 6.234 21 C -0.067 4.067 22 C -0.244 4.244 23 C 0.084 3.916 24 O -0.225 6.225 25 C -0.067 4.067 26 H 0.070 0.930 27 H 0.080 0.920 28 H 0.081 0.919 29 H 0.106 0.894 30 H 0.082 0.918 31 H 0.049 0.951 32 H 0.055 0.945 33 H 0.074 0.926 34 H 0.241 0.759 35 H 0.172 0.828 36 H 0.148 0.852 37 H 0.115 0.885 38 H 0.076 0.924 39 H 0.074 0.926 40 H 0.154 0.846 41 H 0.073 0.927 42 H 0.118 0.882 43 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -8.988 -2.351 19.449 21.554 hybrid contribution -0.438 0.253 -0.503 0.713 sum -9.426 -2.098 18.946 21.265 Atomic orbital electron populations 1.22262 0.96718 1.01637 1.02367 1.21410 0.93373 0.84016 1.03081 1.47209 1.67562 1.13334 1.05568 1.19576 0.97203 0.93182 0.78929 1.21377 0.95443 1.32760 1.07022 0.90768 1.24850 0.94987 0.95842 0.97356 1.69904 1.15144 1.45106 1.23554 0.86853 0.81460 0.81638 0.79727 1.19930 1.21144 1.19058 1.15850 0.78751 0.84826 0.80074 1.90856 1.51961 1.16676 1.85582 1.42656 1.67139 1.20758 1.02974 1.16781 1.04712 0.91560 0.84689 1.21078 0.96119 0.92520 0.97024 1.21061 1.09180 1.00243 0.93620 1.18584 0.95619 0.91515 0.85066 1.86018 1.82322 1.22605 1.32465 1.23037 1.01478 0.78874 1.03312 1.20054 1.13160 0.92995 0.98189 1.18410 0.96908 0.82923 0.93386 1.86072 1.81122 1.16224 1.39106 1.23053 0.98849 0.96721 0.88033 0.93000 0.92044 0.91898 0.89365 0.91811 0.95128 0.94469 0.92629 0.75895 0.82832 0.85195 0.88512 0.92445 0.92628 0.84585 0.92675 0.88241 0.92510 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.19 10.24 37.15 0.38 -1.81 16 2 C 0.11 1.68 5.86 -4.04 -0.02 1.66 16 3 N -0.60 -12.69 2.46 -180.80 -0.44 -13.13 16 4 C 0.23 5.72 4.23 -5.19 -0.02 5.70 16 5 C -0.53 -15.38 9.94 -34.44 -0.34 -15.72 16 6 H 0.07 2.40 8.06 -52.49 -0.42 1.98 16 7 C 0.07 2.11 5.47 -17.82 -0.10 2.02 16 8 N -0.90 -28.07 13.96 55.43 0.77 -27.30 16 9 Si 0.88 21.70 27.47 -169.99 -4.67 17.03 16 10 H -0.27 -6.82 7.11 56.52 0.40 -6.42 16 11 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 12 H -0.27 -6.16 6.54 56.52 0.37 -5.79 16 13 C 0.70 15.15 8.13 -86.92 -0.71 14.44 16 14 O -0.57 -14.43 13.34 5.28 0.07 -14.36 16 15 N -0.68 -11.93 5.04 -14.06 -0.07 -12.00 16 16 C 0.12 2.00 6.33 -83.40 -0.53 1.48 16 17 C -0.05 -0.78 8.70 -39.44 -0.34 -1.12 16 18 C -0.22 -3.12 9.03 -39.42 -0.36 -3.48 16 19 C 0.14 1.89 6.68 -39.24 -0.26 1.62 16 20 O -0.32 -3.89 10.50 -19.66 -0.21 -4.09 16 21 C 0.03 0.23 9.81 101.05 0.99 1.23 16 22 C -0.22 -3.00 8.97 -39.32 -0.35 -3.35 16 23 C 0.13 1.95 6.70 -39.09 -0.26 1.68 16 24 O -0.31 -4.14 10.05 -19.65 -0.20 -4.33 16 25 C 0.03 0.25 9.81 101.05 0.99 1.24 16 26 H 0.05 0.65 8.14 -51.93 -0.42 0.22 16 27 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 28 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 29 H 0.09 1.46 8.07 -51.93 -0.42 1.04 16 30 H 0.06 0.90 6.43 -51.93 -0.33 0.56 16 31 H 0.03 0.71 7.13 -51.93 -0.37 0.34 16 32 H 0.04 0.98 6.85 -51.93 -0.36 0.62 16 33 H 0.26 7.69 8.31 -40.82 -0.34 7.35 16 34 H 0.40 5.98 6.36 -40.82 -0.26 5.72 16 35 H 0.15 2.81 6.19 -52.49 -0.32 2.48 16 36 H 0.13 1.52 6.28 -52.49 -0.33 1.19 16 37 H 0.10 0.57 8.14 -51.93 -0.42 0.15 16 38 H 0.06 0.47 7.66 -51.93 -0.40 0.07 16 39 H 0.06 0.41 7.66 -51.93 -0.40 0.01 16 40 H 0.14 1.51 6.30 -52.49 -0.33 1.18 16 41 H 0.05 0.40 7.66 -51.93 -0.40 0.00 16 42 H 0.10 0.66 8.14 -51.93 -0.42 0.24 16 43 H 0.06 0.48 7.66 -51.94 -0.40 0.08 16 LS Contribution 354.77 15.07 5.35 5.35 Total: -1.00 -35.78 354.77 -6.35 -42.13 By element: Atomic # 1 Polarization: 11.15 SS G_CDS: -6.02 Total: 5.13 kcal Atomic # 6 Polarization: 6.51 SS G_CDS: -0.93 Total: 5.57 kcal Atomic # 7 Polarization: -52.69 SS G_CDS: 0.26 Total: -52.43 kcal Atomic # 8 Polarization: -22.45 SS G_CDS: -0.33 Total: -22.79 kcal Atomic # 14 Polarization: 21.70 SS G_CDS: -4.67 Total: 17.03 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -35.78 -6.35 -42.13 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000078457023.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.840 kcal (2) G-P(sol) polarization free energy of solvation -35.782 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.621 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.348 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.129 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.969 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds