Wall clock time and date at job start Tue Mar 31 2020 10:32:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 O 1.42907 * 109.47311 * 2 1 4 4 C 1.36061 * 117.00143 * 179.97438 * 3 2 1 5 5 C 1.38549 * 120.00440 * 0.02562 * 4 3 2 6 6 C 1.38196 * 120.06579 * 179.97438 * 5 4 3 7 7 C 1.38832 * 120.07866 * 0.02562 * 6 5 4 8 8 N 1.40132 * 119.99679 * 180.02562 * 7 6 5 9 9 C 1.34773 * 120.00122 * 324.89729 * 8 7 6 10 10 O 1.21593 * 120.00314 * 4.58341 * 9 8 7 11 11 N 1.34782 * 120.00355 * 184.58721 * 9 8 7 12 12 C 1.46501 * 119.99630 * 359.97438 * 11 9 8 13 13 C 1.46498 * 120.00313 * 179.97438 * 11 9 8 14 14 C 1.50701 * 109.47119 * 89.99501 * 13 11 9 15 15 H 1.07999 * 119.99871 * 0.02562 * 14 13 11 16 16 C 1.37877 * 119.99813 * 179.97438 * 14 13 11 17 17 N 1.31509 * 120.00153 * 0.02562 * 16 14 13 18 18 Si 1.86801 * 119.99856 * 180.02562 * 16 14 13 19 19 H 1.48499 * 109.47282 * 89.99963 * 18 16 14 20 20 H 1.48497 * 109.47369 * 210.00394 * 18 16 14 21 21 H 1.48500 * 109.47028 * 330.00304 * 18 16 14 22 22 C 1.38797 * 120.00672 * 359.76160 * 7 6 5 23 23 C 1.38509 * 119.93078 * 0.48652 * 22 7 6 24 24 O 1.35989 * 120.04001 * 179.76867 * 23 22 7 25 25 C 1.42897 * 117.00151 * 359.72342 * 24 23 22 26 26 H 1.08999 * 109.47048 * 180.02562 * 1 2 3 27 27 H 1.09000 * 109.47077 * 300.00074 * 1 2 3 28 28 H 1.08997 * 109.47042 * 59.99768 * 1 2 3 29 29 H 1.09000 * 109.47077 * 239.99926 * 2 1 3 30 30 H 1.09000 * 109.47328 * 119.99797 * 2 1 3 31 31 H 1.07998 * 119.96596 * 359.97438 * 5 4 3 32 32 H 1.08003 * 119.96100 * 180.02562 * 6 5 4 33 33 H 0.97004 * 120.00184 * 144.90085 * 8 7 6 34 34 H 1.08988 * 109.47445 * 90.00262 * 12 11 9 35 35 H 1.09004 * 109.47037 * 210.00353 * 12 11 9 36 36 H 1.09004 * 109.47327 * 329.99637 * 12 11 9 37 37 H 1.08993 * 109.47350 * 209.99816 * 13 11 9 38 38 H 1.09002 * 109.47119 * 329.99714 * 13 11 9 39 39 H 0.96999 * 120.00334 * 179.97438 * 17 16 14 40 40 H 1.08002 * 120.03953 * 180.28128 * 22 7 6 41 41 H 1.08997 * 109.47982 * 180.02562 * 25 24 23 42 42 H 1.09008 * 109.46975 * 60.00313 * 25 24 23 43 43 H 1.08999 * 109.47625 * 300.00692 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.3553 1.5256 0.0005 5 6 4.1993 0.4269 0.0005 6 6 5.5696 0.6065 0.0005 7 6 6.1033 1.8881 0.0011 8 7 7.4930 2.0682 0.0006 9 6 8.2844 1.2074 0.6708 10 8 7.8015 0.2283 1.2062 11 7 9.6112 1.4319 0.7478 12 6 10.1931 2.6113 0.1024 13 6 10.4713 0.4965 1.4769 14 6 10.9619 -0.5729 0.5353 15 1 10.6633 -0.5572 -0.5024 16 6 11.7929 -1.5709 0.9985 17 7 12.1569 -1.5897 2.2621 18 14 12.4017 -2.8962 -0.1687 19 1 13.6795 -2.4615 -0.7880 20 1 12.6203 -4.1570 0.5846 21 1 11.3890 -3.1235 -1.2309 22 6 5.2607 2.9910 -0.0033 23 6 3.8873 2.8114 0.0019 24 8 3.0596 3.8904 0.0023 25 6 3.6750 5.1801 0.0033 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5139 -0.8899 29 1 1.8933 -0.5138 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 3.7860 -0.5709 0.0005 32 1 6.2260 -0.2512 0.0001 33 1 7.8855 2.8125 -0.4822 34 1 10.1959 3.4453 0.8041 35 1 11.2158 2.3905 -0.2036 36 1 9.6008 2.8755 -0.7737 37 1 11.3237 1.0345 1.8916 38 1 9.9038 0.0361 2.2857 39 1 12.7413 -2.2920 2.5881 40 1 5.6754 3.9882 -0.0075 41 1 2.9042 5.9507 0.0040 42 1 4.2956 5.2873 -0.8865 43 1 4.2951 5.2862 0.8935 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000079813744.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:32:56 Heat of formation + Delta-G solvation = -62.922190 kcal Electronic energy + Delta-G solvation = -25260.371647 eV Core-core repulsion = 21500.379073 eV Total energy + Delta-G solvation = -3759.992575 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 308.157 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.70128 -39.60283 -38.50724 -36.97905 -34.86383 -33.99612 -32.54345 -31.72300 -30.17303 -28.89843 -27.74604 -26.96542 -25.72717 -23.98864 -23.30835 -21.97783 -21.43431 -19.54325 -18.59451 -17.82172 -17.35978 -16.56103 -16.29338 -16.17509 -15.81491 -15.54050 -14.94743 -14.76973 -14.58484 -14.29642 -13.98783 -13.40584 -13.26685 -13.09311 -12.91770 -12.66030 -12.46016 -12.19943 -12.14810 -12.00553 -11.90312 -11.50462 -11.24274 -11.19600 -11.00566 -10.92944 -10.83607 -10.59166 -10.16764 -9.68559 -9.57091 -9.20012 -8.50275 -8.44985 -7.76786 -7.29390 -6.05565 -4.10486 1.34554 1.57985 3.08980 3.22017 3.29089 3.30274 3.36141 3.41171 3.65396 4.03177 4.37745 4.51428 4.76356 4.80991 4.90806 4.97278 5.05323 5.11429 5.18991 5.28432 5.31283 5.37733 5.41205 5.47084 5.50129 5.61322 5.64398 5.81390 5.84703 5.89476 6.08585 6.43187 6.45931 6.62647 6.81844 7.05267 7.10404 7.33226 7.47800 7.63177 7.65726 7.92165 8.21180 8.55185 8.90327 9.21423 9.54995 11.02318 Molecular weight = 308.16amu Principal moments of inertia in cm(-1) A = 0.017742 B = 0.003176 C = 0.002792 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1577.797467 B = 8813.457417 C =10027.937810 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.053 3.947 3 O -0.309 6.309 4 C 0.075 3.925 5 C -0.151 4.151 6 C -0.114 4.114 7 C 0.183 3.817 8 N -0.695 5.695 9 C 0.698 3.302 10 O -0.567 6.567 11 N -0.612 5.612 12 C 0.084 3.916 13 C 0.259 3.741 14 C -0.527 4.527 15 H 0.057 0.943 16 C 0.061 3.939 17 N -0.895 5.895 18 Si 0.898 3.102 19 H -0.281 1.281 20 H -0.285 1.285 21 H -0.274 1.274 22 C -0.207 4.207 23 C 0.113 3.887 24 O -0.307 6.307 25 C 0.027 3.973 26 H 0.075 0.925 27 H 0.065 0.935 28 H 0.064 0.936 29 H 0.060 0.940 30 H 0.061 0.939 31 H 0.135 0.865 32 H 0.151 0.849 33 H 0.401 0.599 34 H 0.045 0.955 35 H 0.079 0.921 36 H 0.049 0.951 37 H 0.035 0.965 38 H 0.046 0.954 39 H 0.264 0.736 40 H 0.135 0.865 41 H 0.097 0.903 42 H 0.053 0.947 43 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.354 11.596 -6.377 21.825 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.023 4.023 3 O -0.224 6.224 4 C 0.029 3.971 5 C -0.171 4.171 6 C -0.135 4.135 7 C 0.086 3.914 8 N -0.345 5.345 9 C 0.400 3.600 10 O -0.443 6.443 11 N -0.348 5.348 12 C -0.060 4.060 13 C 0.140 3.860 14 C -0.566 4.566 15 H 0.075 0.925 16 C -0.141 4.141 17 N -0.534 5.534 18 Si 0.726 3.274 19 H -0.207 1.207 20 H -0.211 1.211 21 H -0.199 1.199 22 C -0.229 4.229 23 C 0.067 3.933 24 O -0.220 6.220 25 C -0.068 4.068 26 H 0.094 0.906 27 H 0.084 0.916 28 H 0.083 0.917 29 H 0.078 0.922 30 H 0.079 0.921 31 H 0.153 0.847 32 H 0.168 0.832 33 H 0.237 0.763 34 H 0.064 0.936 35 H 0.098 0.902 36 H 0.068 0.932 37 H 0.053 0.947 38 H 0.064 0.936 39 H 0.073 0.927 40 H 0.152 0.848 41 H 0.115 0.885 42 H 0.072 0.928 43 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -17.816 10.907 -5.795 21.678 hybrid contribution 1.113 -0.380 -0.849 1.451 sum -16.703 10.527 -6.644 20.831 Atomic orbital electron populations 1.21745 0.93019 1.02560 1.03357 1.22747 0.95642 0.82521 1.01374 1.86125 1.18259 1.28401 1.89612 1.18095 0.82952 0.90992 1.05026 1.20981 0.93457 0.97371 1.05270 1.21222 0.94379 0.97452 1.00447 1.17154 0.82194 0.92888 0.99149 1.42940 1.04106 1.32574 1.54898 1.15911 0.81768 0.82638 0.79717 1.90885 1.73307 1.28840 1.51286 1.47506 1.04790 1.26528 1.55932 1.21592 1.00383 0.88092 0.95979 1.19260 0.88133 0.86648 0.91953 1.21450 1.28909 1.10101 0.96156 0.92468 1.24929 0.96180 0.97740 0.95237 1.69926 1.35508 1.34106 1.13837 0.86492 0.78898 0.81202 0.80794 1.20673 1.21068 1.19902 1.20655 0.91094 0.98928 1.12223 1.17797 0.88108 0.85178 1.02179 1.86157 1.33674 1.12910 1.89305 1.23026 0.99702 0.82882 1.01232 0.90585 0.91636 0.91680 0.92201 0.92103 0.84692 0.83167 0.76263 0.93643 0.90242 0.93191 0.94749 0.93619 0.92679 0.84771 0.88486 0.92845 0.92764 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.17 10.28 37.16 0.38 -0.79 16 2 C 0.05 0.53 5.46 37.16 0.20 0.74 16 3 O -0.31 -4.28 9.92 -34.54 -0.34 -4.63 16 4 C 0.08 1.11 6.70 -39.13 -0.26 0.85 16 5 C -0.15 -2.23 9.03 -39.48 -0.36 -2.58 16 6 C -0.11 -1.95 8.69 -39.38 -0.34 -2.30 16 7 C 0.18 2.94 6.30 -83.64 -0.53 2.41 16 8 N -0.69 -11.32 5.22 -14.20 -0.07 -11.39 16 9 C 0.70 14.83 8.12 -86.92 -0.71 14.12 16 10 O -0.57 -14.36 13.36 5.28 0.07 -14.29 16 11 N -0.61 -12.90 2.86 -188.74 -0.54 -13.44 16 12 C 0.08 1.27 10.24 59.85 0.61 1.89 16 13 C 0.26 6.73 5.16 -5.19 -0.03 6.70 16 14 C -0.53 -14.83 9.39 -34.44 -0.32 -15.15 16 15 H 0.06 1.61 7.81 -52.49 -0.41 1.20 16 16 C 0.06 1.74 5.46 -17.82 -0.10 1.64 16 17 N -0.89 -26.44 13.29 55.43 0.74 -25.71 16 18 Si 0.90 21.74 29.54 -169.99 -5.02 16.72 16 19 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 20 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 21 H -0.27 -6.63 7.11 56.52 0.40 -6.23 16 22 C -0.21 -2.81 8.95 -39.27 -0.35 -3.16 16 23 C 0.11 1.63 6.70 -39.14 -0.26 1.36 16 24 O -0.31 -4.05 10.28 -34.31 -0.35 -4.40 16 25 C 0.03 0.23 9.81 101.05 0.99 1.22 16 26 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16 27 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 28 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 29 H 0.06 0.55 7.66 -51.93 -0.40 0.15 16 30 H 0.06 0.59 7.66 -51.93 -0.40 0.19 16 31 H 0.14 1.67 6.29 -52.49 -0.33 1.34 16 32 H 0.15 2.95 6.21 -52.48 -0.33 2.62 16 33 H 0.40 5.09 6.52 -40.82 -0.27 4.82 16 34 H 0.05 0.59 8.14 -51.94 -0.42 0.17 16 35 H 0.08 1.24 8.07 -51.93 -0.42 0.82 16 36 H 0.05 0.60 6.30 -51.93 -0.33 0.27 16 37 H 0.03 0.90 8.07 -51.93 -0.42 0.48 16 38 H 0.05 1.34 7.42 -51.93 -0.39 0.96 16 39 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 40 H 0.13 1.43 6.30 -52.49 -0.33 1.10 16 41 H 0.10 0.61 8.14 -51.93 -0.42 0.19 16 42 H 0.05 0.39 7.65 -51.92 -0.40 -0.01 16 43 H 0.05 0.43 7.67 -51.93 -0.40 0.03 16 LS Contribution 358.72 15.07 5.41 5.41 Total: -1.00 -34.84 358.72 -7.24 -42.08 By element: Atomic # 1 Polarization: 8.75 SS G_CDS: -6.05 Total: 2.70 kcal Atomic # 6 Polarization: 8.01 SS G_CDS: -1.07 Total: 6.95 kcal Atomic # 7 Polarization: -50.67 SS G_CDS: 0.12 Total: -50.54 kcal Atomic # 8 Polarization: -22.69 SS G_CDS: -0.62 Total: -23.32 kcal Atomic # 14 Polarization: 21.74 SS G_CDS: -5.02 Total: 16.72 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -34.84 -7.24 -42.08 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000079813744.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.843 kcal (2) G-P(sol) polarization free energy of solvation -34.844 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.687 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.235 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.079 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.922 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds