Wall clock time and date at job start Tue Mar 31 2020 10:18:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 N 1.46492 * 109.46985 * 2 1 4 4 C 1.46502 * 120.00040 * 269.99895 * 3 2 1 5 5 C 1.50696 * 109.47227 * 269.99911 * 4 3 2 6 6 H 1.08006 * 120.00152 * 0.02562 * 5 4 3 7 7 C 1.37878 * 120.00407 * 179.97438 * 5 4 3 8 8 N 1.31509 * 120.00196 * 180.02562 * 7 5 4 9 9 Si 1.86798 * 119.99589 * 0.02562 * 7 5 4 10 10 H 1.48502 * 109.47305 * 90.00018 * 9 7 5 11 11 H 1.48502 * 109.47064 * 209.99930 * 9 7 5 12 12 H 1.48497 * 109.47399 * 329.99701 * 9 7 5 13 13 C 1.34780 * 120.00368 * 90.00047 * 3 2 1 14 14 O 1.21583 * 120.00436 * 179.97438 * 13 3 2 15 15 N 1.34782 * 119.99455 * 359.97438 * 13 3 2 16 16 C 1.40155 * 119.99699 * 185.62793 * 15 13 3 17 17 C 1.38689 * 120.06209 * 24.77690 * 16 15 13 18 18 C 1.38628 * 119.93245 * 179.97438 * 17 16 15 19 19 O 1.35977 * 119.97197 * 180.02562 * 18 17 16 20 20 C 1.42894 * 116.99724 * 180.02562 * 19 18 17 21 21 C 1.38711 * 120.05105 * 0.02562 * 18 17 16 22 22 C 1.38242 * 120.11909 * 359.97438 * 21 18 17 23 23 C 1.38510 * 120.06832 * 0.02562 * 22 21 18 24 24 O 1.36063 * 120.02201 * 180.27592 * 23 22 21 25 25 C 1.42898 * 117.00300 * 359.72328 * 24 23 22 26 26 H 1.08993 * 109.47323 * 300.00234 * 1 2 3 27 27 H 1.09003 * 109.46999 * 60.00351 * 1 2 3 28 28 H 1.09004 * 109.46725 * 179.97438 * 1 2 3 29 29 H 1.09006 * 109.47073 * 239.99952 * 2 1 3 30 30 H 1.09002 * 109.46872 * 120.00188 * 2 1 3 31 31 H 1.09002 * 109.47364 * 30.00172 * 4 3 2 32 32 H 1.08996 * 109.47159 * 150.00144 * 4 3 2 33 33 H 0.97002 * 120.00139 * 180.02562 * 8 7 5 34 34 H 0.96993 * 119.99945 * 5.62634 * 15 13 3 35 35 H 1.07997 * 120.03082 * 359.95754 * 17 16 15 36 36 H 1.08997 * 109.47826 * 60.00279 * 20 19 18 37 37 H 1.09008 * 109.47320 * 180.02562 * 20 19 18 38 38 H 1.09008 * 109.47164 * 300.00115 * 20 19 18 39 39 H 1.07996 * 119.94002 * 180.02562 * 21 18 17 40 40 H 1.08001 * 119.96282 * 180.02562 * 22 21 18 41 41 H 1.09000 * 109.46672 * 180.02562 * 25 24 23 42 42 H 1.09004 * 109.46958 * 299.99898 * 25 24 23 43 43 H 1.08995 * 109.46991 * 59.99986 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2625 2.0718 -1.2687 5 6 3.6858 1.8350 -1.7037 6 1 4.3427 1.2302 -1.0961 7 6 4.1492 2.3896 -2.8779 8 7 5.3911 2.1826 -3.2578 9 14 3.0128 3.4351 -3.9292 10 1 3.1163 4.8554 -3.5082 11 1 3.4058 3.3119 -5.3560 12 1 1.6132 2.9691 -3.7593 13 6 2.2430 2.0166 1.1672 14 8 2.6487 3.1627 1.1672 15 7 2.0179 1.3813 2.3344 16 6 2.1376 2.0770 3.5452 17 6 1.9746 3.4540 3.5744 18 6 2.0931 4.1393 4.7736 19 8 1.9330 5.4893 4.8032 20 6 2.0692 6.1310 6.0727 21 6 2.3748 3.4490 5.9433 22 6 2.5376 2.0764 5.9166 23 6 2.4203 1.3867 4.7212 24 8 2.5752 0.0352 4.6970 25 6 2.8634 -0.6072 5.9405 26 1 -0.3633 0.5138 0.8899 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 1.8934 -0.5139 -0.8900 30 1 1.8934 -0.5139 0.8900 31 1 1.5817 1.6877 -2.0284 32 1 2.0956 3.1410 -1.1384 33 1 5.7172 2.5731 -4.0837 34 1 1.7731 0.4428 2.3364 35 1 1.7560 3.9918 2.6637 36 1 3.0678 5.9459 6.4682 37 1 1.9177 7.2041 5.9555 38 1 1.3254 5.7326 6.7629 39 1 2.4663 3.9846 6.8766 40 1 2.7565 1.5414 6.8289 41 1 2.9628 -1.6808 5.7803 42 1 3.7952 -0.2129 6.3458 43 1 2.0524 -0.4179 6.6437 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000080162983.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:18:42 Heat of formation + Delta-G solvation = -55.789671 kcal Electronic energy + Delta-G solvation = -25933.071662 eV Core-core repulsion = 22173.388377 eV Total energy + Delta-G solvation = -3759.683285 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 308.157 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.77776 -39.47914 -38.88620 -36.54690 -35.37323 -34.21975 -32.57792 -30.38273 -30.25761 -29.35966 -27.65192 -27.03664 -26.88389 -23.35583 -22.97593 -22.15707 -21.47123 -19.28816 -18.67937 -17.68572 -17.38184 -16.86703 -16.40300 -16.13528 -15.86614 -15.53339 -14.82014 -14.75679 -14.75174 -14.04070 -13.94753 -13.66749 -13.45514 -13.00327 -12.81644 -12.78264 -12.52610 -12.35900 -12.23821 -11.88329 -11.68002 -11.64704 -11.43249 -11.05966 -10.97875 -10.76675 -10.57773 -10.45772 -10.16842 -10.00561 -9.49193 -9.25443 -8.54284 -8.19254 -7.76693 -7.37344 -6.03981 -4.02487 1.37115 1.53954 3.01596 3.20774 3.33240 3.38829 3.41121 3.47670 3.61671 4.05596 4.36767 4.43978 4.71528 4.90098 5.01297 5.03483 5.05617 5.09061 5.21017 5.25889 5.28575 5.35063 5.40216 5.52768 5.55240 5.61689 5.84469 5.94813 5.97694 6.14491 6.19572 6.37066 6.43591 6.50040 6.62694 6.90566 6.96510 7.27568 7.35205 7.51498 7.58598 7.66753 8.48570 8.52309 8.99695 9.17203 9.56263 11.09564 Molecular weight = 308.16amu Principal moments of inertia in cm(-1) A = 0.013882 B = 0.004176 C = 0.003585 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2016.568406 B = 6703.129562 C = 7808.505942 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.106 3.894 3 N -0.600 5.600 4 C 0.231 3.769 5 C -0.529 4.529 6 H 0.074 0.926 7 C 0.073 3.927 8 N -0.898 5.898 9 Si 0.876 3.124 10 H -0.273 1.273 11 H -0.286 1.286 12 H -0.266 1.266 13 C 0.701 3.299 14 O -0.564 6.564 15 N -0.681 5.681 16 C 0.201 3.799 17 C -0.133 4.133 18 C 0.117 3.883 19 O -0.313 6.313 20 C 0.029 3.971 21 C -0.203 4.203 22 C -0.147 4.147 23 C 0.050 3.950 24 O -0.320 6.320 25 C 0.032 3.968 26 H 0.052 0.948 27 H 0.061 0.939 28 H 0.062 0.938 29 H 0.089 0.911 30 H 0.062 0.938 31 H 0.032 0.968 32 H 0.038 0.962 33 H 0.264 0.736 34 H 0.408 0.592 35 H 0.166 0.834 36 H 0.053 0.947 37 H 0.097 0.903 38 H 0.052 0.948 39 H 0.127 0.873 40 H 0.130 0.870 41 H 0.097 0.903 42 H 0.052 0.948 43 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.337 -3.322 20.554 23.245 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C -0.018 4.018 3 N -0.335 5.335 4 C 0.110 3.890 5 C -0.567 4.567 6 H 0.092 0.908 7 C -0.130 4.130 8 N -0.537 5.537 9 Si 0.703 3.297 10 H -0.199 1.199 11 H -0.211 1.211 12 H -0.190 1.190 13 C 0.403 3.597 14 O -0.440 6.440 15 N -0.330 5.330 16 C 0.103 3.897 17 C -0.155 4.155 18 C 0.072 3.928 19 O -0.227 6.227 20 C -0.066 4.066 21 C -0.223 4.223 22 C -0.167 4.167 23 C 0.003 3.997 24 O -0.234 6.234 25 C -0.063 4.063 26 H 0.071 0.929 27 H 0.080 0.920 28 H 0.081 0.919 29 H 0.108 0.892 30 H 0.080 0.920 31 H 0.050 0.950 32 H 0.056 0.944 33 H 0.074 0.926 34 H 0.246 0.754 35 H 0.183 0.817 36 H 0.071 0.929 37 H 0.115 0.885 38 H 0.070 0.930 39 H 0.145 0.855 40 H 0.148 0.852 41 H 0.115 0.885 42 H 0.071 0.929 43 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -9.977 -2.473 19.920 22.415 hybrid contribution -0.287 -0.047 0.014 0.291 sum -10.265 -2.520 19.933 22.562 Atomic orbital electron populations 1.22253 0.96575 1.01658 1.02457 1.21418 0.93535 0.83920 1.02966 1.47255 1.67162 1.13490 1.05565 1.19607 0.97275 0.93258 0.78837 1.21365 0.95424 1.32878 1.07062 0.90762 1.24841 0.94991 0.95797 0.97338 1.69899 1.15166 1.45044 1.23551 0.86857 0.81447 0.81700 0.79706 1.19860 1.21141 1.19043 1.15871 0.78883 0.84906 0.80073 1.90868 1.51013 1.16743 1.85398 1.42800 1.72689 1.14294 1.03189 1.16521 0.99750 0.90379 0.83078 1.20559 1.04889 0.91770 0.98252 1.18669 0.98050 0.82649 0.93450 1.86120 1.86761 1.17502 1.32294 1.23002 1.00955 0.98006 0.84627 1.20866 1.09473 0.94518 0.97459 1.20666 1.05299 0.94440 0.96280 1.18482 1.04910 0.82998 0.93299 1.86016 1.87042 1.17028 1.33316 1.22971 1.00119 0.97905 0.85318 0.92926 0.91997 0.91886 0.89248 0.91988 0.94990 0.94352 0.92608 0.75391 0.81681 0.92853 0.88495 0.92982 0.85543 0.85176 0.88467 0.92889 0.93009 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.21 10.24 37.16 0.38 -1.83 16 2 C 0.11 1.68 5.94 -4.04 -0.02 1.66 16 3 N -0.60 -12.65 2.46 -180.80 -0.44 -13.09 16 4 C 0.23 5.70 4.23 -5.19 -0.02 5.68 16 5 C -0.53 -15.40 9.94 -34.44 -0.34 -15.74 16 6 H 0.07 2.39 8.06 -52.48 -0.42 1.97 16 7 C 0.07 2.14 5.47 -17.82 -0.10 2.04 16 8 N -0.90 -28.06 13.96 55.43 0.77 -27.29 16 9 Si 0.88 21.77 27.47 -169.99 -4.67 17.10 16 10 H -0.27 -6.85 7.11 56.52 0.40 -6.45 16 11 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 12 H -0.27 -6.17 6.54 56.52 0.37 -5.80 16 13 C 0.70 15.22 8.08 -86.91 -0.70 14.52 16 14 O -0.56 -14.42 13.09 5.29 0.07 -14.35 16 15 N -0.68 -12.00 5.17 -14.12 -0.07 -12.07 16 16 C 0.20 3.44 6.44 -83.50 -0.54 2.91 16 17 C -0.13 -2.40 8.65 -39.27 -0.34 -2.74 16 18 C 0.12 1.81 6.68 -39.26 -0.26 1.55 16 19 O -0.31 -4.59 10.50 -19.67 -0.21 -4.80 16 20 C 0.03 0.27 9.81 101.05 0.99 1.26 16 21 C -0.20 -2.54 9.03 -39.41 -0.36 -2.90 16 22 C -0.15 -1.79 9.03 -39.48 -0.36 -2.15 16 23 C 0.05 0.72 6.70 -39.10 -0.26 0.46 16 24 O -0.32 -4.11 9.91 -19.94 -0.20 -4.31 16 25 C 0.03 0.26 9.81 101.05 0.99 1.26 16 26 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 27 H 0.06 0.86 8.14 -51.93 -0.42 0.43 16 28 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 29 H 0.09 1.46 8.07 -51.93 -0.42 1.04 16 30 H 0.06 0.85 6.29 -51.93 -0.33 0.53 16 31 H 0.03 0.74 7.13 -51.93 -0.37 0.37 16 32 H 0.04 1.01 6.85 -51.93 -0.36 0.65 16 33 H 0.26 7.70 8.31 -40.82 -0.34 7.36 16 34 H 0.41 6.12 6.03 -40.82 -0.25 5.87 16 35 H 0.17 3.42 5.78 -52.49 -0.30 3.11 16 36 H 0.05 0.44 7.66 -51.93 -0.40 0.04 16 37 H 0.10 0.71 8.14 -51.92 -0.42 0.28 16 38 H 0.05 0.39 7.66 -51.92 -0.40 0.00 16 39 H 0.13 1.20 6.28 -52.49 -0.33 0.87 16 40 H 0.13 1.16 6.29 -52.49 -0.33 0.83 16 41 H 0.10 0.61 8.14 -51.93 -0.42 0.18 16 42 H 0.05 0.40 7.67 -51.93 -0.40 0.00 16 43 H 0.05 0.35 7.65 -51.93 -0.40 -0.05 16 LS Contribution 353.80 15.07 5.33 5.33 Total: -1.00 -36.00 353.80 -6.33 -42.33 By element: Atomic # 1 Polarization: 11.14 SS G_CDS: -5.98 Total: 5.17 kcal Atomic # 6 Polarization: 6.92 SS G_CDS: -0.94 Total: 5.98 kcal Atomic # 7 Polarization: -52.71 SS G_CDS: 0.26 Total: -52.46 kcal Atomic # 8 Polarization: -23.12 SS G_CDS: -0.33 Total: -23.46 kcal Atomic # 14 Polarization: 21.77 SS G_CDS: -4.67 Total: 17.10 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -36.00 -6.33 -42.33 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000080162983.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.455 kcal (2) G-P(sol) polarization free energy of solvation -36.003 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.459 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.331 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.334 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.790 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds