Wall clock time and date at job start Tue Mar 31 2020 09:19:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08998 * 109.47106 * 2 1 4 4 O 1.42898 * 109.47045 * 239.99661 * 2 1 3 5 5 C 1.53005 * 109.47235 * 120.00061 * 2 1 3 6 6 C 1.52996 * 109.47350 * 185.00148 * 5 2 1 7 7 N 1.46500 * 109.47263 * 179.97438 * 6 5 2 8 8 C 1.46502 * 119.99903 * 269.99898 * 7 6 5 9 9 C 1.34775 * 120.00235 * 89.99518 * 7 6 5 10 10 O 1.21593 * 119.99558 * 0.02562 * 9 7 6 11 11 N 1.34773 * 120.00133 * 179.97438 * 9 7 6 12 12 C 1.40022 * 119.99972 * 175.43193 * 11 9 7 13 13 C 1.38916 * 120.00202 * 215.14231 * 12 11 9 14 14 C 1.38009 * 119.99844 * 180.02562 * 13 12 11 15 15 C 1.38902 * 120.00511 * 0.02562 * 14 13 12 16 16 O 1.35784 * 120.00081 * 179.97438 * 15 14 13 17 17 C 1.34811 * 116.99947 * 5.37934 * 16 15 14 18 18 H 1.07998 * 120.00136 * 354.96051 * 17 16 15 19 19 C 1.38626 * 119.99913 * 174.95539 * 17 16 15 20 20 N 1.31581 * 120.00113 * 0.02562 * 19 17 16 21 21 Si 1.86797 * 120.00090 * 179.97438 * 19 17 16 22 22 H 1.48505 * 109.47025 * 0.02562 * 21 19 17 23 23 H 1.48502 * 109.47256 * 120.00211 * 21 19 17 24 24 H 1.48499 * 109.47314 * 240.00396 * 21 19 17 25 25 C 1.38903 * 119.99865 * 0.23952 * 15 14 13 26 26 C 1.38008 * 120.00313 * 359.48730 * 25 15 14 27 27 H 1.09003 * 109.46935 * 299.99726 * 1 2 3 28 28 H 1.08992 * 109.46755 * 60.00269 * 1 2 3 29 29 H 1.09006 * 109.46864 * 180.02562 * 1 2 3 30 30 H 0.96699 * 114.00193 * 300.00229 * 4 2 1 31 31 H 1.09001 * 109.47187 * 64.99494 * 5 2 1 32 32 H 1.09001 * 109.46798 * 305.00150 * 5 2 1 33 33 H 1.08997 * 109.47034 * 59.99625 * 6 5 2 34 34 H 1.08997 * 109.46698 * 299.99695 * 6 5 2 35 35 H 1.08997 * 109.46766 * 269.99930 * 8 7 6 36 36 H 1.08996 * 109.46879 * 29.99775 * 8 7 6 37 37 H 1.09003 * 109.47153 * 149.99792 * 8 7 6 38 38 H 0.96994 * 120.00055 * 355.43674 * 11 9 7 39 39 H 1.07994 * 120.00027 * 359.97438 * 13 12 11 40 40 H 1.08001 * 119.99776 * 179.97438 * 14 13 12 41 41 H 0.96994 * 119.99886 * 179.97438 * 20 19 17 42 42 H 1.08002 * 120.00025 * 179.71871 * 25 15 14 43 43 H 1.07998 * 120.00390 * 180.23688 * 26 25 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 8 2.0064 -0.6737 -1.1667 5 6 2.0401 -0.7213 1.2493 6 6 3.5649 -0.6133 1.3138 7 7 4.0532 -1.3034 2.5102 8 6 4.1930 -0.5720 3.7719 9 6 4.3736 -2.6111 2.4504 10 8 4.2579 -3.2180 1.4031 11 7 4.8233 -3.2458 3.5510 12 6 5.0652 -4.6245 3.5143 13 6 4.8134 -5.4040 4.6363 14 6 5.0523 -6.7627 4.6003 15 6 5.5452 -7.3509 3.4425 16 8 5.7807 -8.6877 3.4073 17 6 5.4115 -9.4029 4.4888 18 1 5.0262 -8.8996 5.3632 19 6 5.5262 -10.7843 4.4784 20 7 5.9959 -11.3975 3.4132 21 14 5.0152 -11.7753 5.9771 22 1 4.5243 -10.8556 7.0348 23 1 3.9322 -12.7192 5.6008 24 1 6.1822 -12.5389 6.4872 25 6 5.8022 -6.5707 2.3224 26 6 5.5580 -5.2128 2.3564 27 1 -0.3633 0.5138 0.8900 28 1 -0.3632 0.5138 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 1.7210 -1.5953 -1.2328 31 1 1.7517 -1.7715 1.2057 32 1 1.6054 -0.2618 2.1370 33 1 3.8532 0.4369 1.3574 34 1 3.9994 -1.0728 0.4261 35 1 5.1929 -0.1426 3.8339 36 1 3.4517 0.2259 3.8133 37 1 4.0385 -1.2552 4.6070 38 1 4.9793 -2.7476 4.3684 39 1 4.4314 -4.9466 5.5369 40 1 4.8569 -7.3687 5.4727 41 1 6.0765 -12.3641 3.4061 42 1 6.1897 -7.0273 1.4236 43 1 5.7543 -4.6068 1.4842 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000080166165.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:19:43 Heat of formation + Delta-G solvation = -73.792929 kcal Electronic energy + Delta-G solvation = -24800.165232 eV Core-core repulsion = 21039.701267 eV Total energy + Delta-G solvation = -3760.463965 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 308.157 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.51257 -38.87735 -38.12078 -36.72701 -35.51731 -34.04040 -32.37957 -32.05358 -30.17241 -29.66464 -27.80834 -26.72800 -25.33490 -23.93422 -22.19119 -21.79770 -21.20848 -19.76059 -18.35346 -17.85713 -17.23867 -16.74733 -16.50154 -16.10030 -15.54281 -15.38114 -14.53107 -14.49705 -14.14093 -14.00442 -13.74653 -13.52181 -13.45010 -13.26980 -13.09011 -12.78214 -12.69121 -12.34141 -12.27939 -12.12223 -11.77768 -11.51217 -11.47902 -11.12231 -11.08126 -11.02243 -10.69506 -10.43342 -10.38504 -9.85828 -9.59634 -9.20005 -8.82049 -8.64592 -8.15757 -6.87377 -6.41438 -3.99525 2.19742 2.27749 2.62022 3.12871 3.15043 3.20682 3.32457 3.91841 3.99345 4.11760 4.49248 4.61405 4.67482 4.74153 4.79934 4.94555 5.05569 5.12632 5.23042 5.29408 5.33503 5.37913 5.41260 5.48369 5.58424 5.75915 5.81211 5.87553 5.94279 6.15883 6.22561 6.29391 6.41769 6.71207 6.89254 6.94849 7.13922 7.26726 7.27683 7.42287 7.46647 7.84730 7.99854 8.03554 8.68772 9.04089 9.75521 10.76795 Molecular weight = 308.16amu Principal moments of inertia in cm(-1) A = 0.023366 B = 0.002501 C = 0.002423 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1198.011064 B =11192.203895 C =11552.345920 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.105 3.895 3 H 0.097 0.903 4 O -0.564 6.564 5 C -0.169 4.169 6 C 0.138 3.862 7 N -0.637 5.637 8 C 0.078 3.922 9 C 0.700 3.300 10 O -0.571 6.571 11 N -0.675 5.675 12 C 0.053 3.947 13 C -0.093 4.093 14 C -0.220 4.220 15 C 0.146 3.854 16 O -0.178 6.178 17 C -0.390 4.390 18 H 0.092 0.908 19 C 0.038 3.962 20 N -0.863 5.863 21 Si 0.941 3.059 22 H -0.267 1.267 23 H -0.276 1.276 24 H -0.276 1.276 25 C -0.178 4.178 26 C -0.067 4.067 27 H 0.064 0.936 28 H 0.063 0.937 29 H 0.059 0.941 30 H 0.380 0.620 31 H 0.073 0.927 32 H 0.069 0.931 33 H 0.073 0.927 34 H 0.092 0.908 35 H 0.055 0.945 36 H 0.072 0.928 37 H 0.066 0.934 38 H 0.397 0.603 39 H 0.108 0.892 40 H 0.131 0.869 41 H 0.269 0.731 42 H 0.120 0.880 43 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.423 23.879 0.843 25.021 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.243 4.243 2 C 0.046 3.954 3 H 0.115 0.885 4 O -0.370 6.370 5 C -0.208 4.208 6 C 0.015 3.985 7 N -0.375 5.375 8 C -0.066 4.066 9 C 0.402 3.598 10 O -0.448 6.448 11 N -0.324 5.324 12 C -0.040 4.040 13 C -0.114 4.114 14 C -0.239 4.239 15 C 0.092 3.908 16 O -0.082 6.082 17 C -0.467 4.467 18 H 0.109 0.891 19 C -0.166 4.166 20 N -0.498 5.498 21 Si 0.766 3.234 22 H -0.192 1.192 23 H -0.202 1.202 24 H -0.202 1.202 25 C -0.198 4.198 26 C -0.087 4.087 27 H 0.083 0.917 28 H 0.082 0.918 29 H 0.078 0.922 30 H 0.228 0.772 31 H 0.092 0.908 32 H 0.088 0.912 33 H 0.091 0.909 34 H 0.111 0.889 35 H 0.074 0.926 36 H 0.091 0.909 37 H 0.085 0.915 38 H 0.232 0.768 39 H 0.126 0.874 40 H 0.148 0.852 41 H 0.079 0.921 42 H 0.138 0.862 43 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -7.094 23.649 -0.275 24.692 hybrid contribution -0.633 -0.665 1.631 1.872 sum -7.726 22.985 1.357 24.286 Atomic orbital electron populations 1.22504 0.96477 1.02752 1.02567 1.21817 0.92753 0.96475 0.84387 0.88542 1.86551 1.77271 1.29555 1.43586 1.22727 0.97086 1.02351 0.98637 1.21251 0.93112 0.96282 0.87889 1.47073 1.70221 1.08707 1.11501 1.21721 1.01834 0.97250 0.85767 1.15920 0.78334 0.81163 0.84399 1.90920 1.60019 1.64923 1.28906 1.42468 1.68857 1.07718 1.13311 1.17070 1.09030 0.81117 0.96799 1.20441 1.00819 0.93255 0.96838 1.20947 1.09183 0.94224 0.99586 1.19413 0.92851 0.85560 0.92981 1.83994 1.70266 1.13004 1.40911 1.21348 1.43904 0.88729 0.92692 0.89079 1.25283 0.96856 0.95839 0.98648 1.70061 1.42189 1.09693 1.27858 0.85653 0.78426 0.79534 0.79820 1.19163 1.20191 1.20193 1.20161 1.09086 0.92757 0.97772 1.20781 0.96674 0.93985 0.97246 0.91712 0.91794 0.92174 0.77246 0.90814 0.91224 0.90904 0.88925 0.92608 0.90909 0.91499 0.76763 0.87360 0.85155 0.92115 0.86161 0.85148 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.20 9.53 37.16 0.35 -0.85 16 2 C 0.11 0.80 3.59 -26.73 -0.10 0.70 16 3 H 0.10 0.64 8.14 -51.93 -0.42 0.22 16 4 O -0.56 -5.49 12.87 -35.23 -0.45 -5.94 16 5 C -0.17 -1.42 5.22 -26.73 -0.14 -1.56 16 6 C 0.14 1.32 5.30 -4.04 -0.02 1.30 16 7 N -0.64 -6.82 2.87 -187.36 -0.54 -7.36 16 8 C 0.08 0.52 10.16 59.85 0.61 1.12 16 9 C 0.70 10.55 8.12 -86.92 -0.71 9.84 16 10 O -0.57 -10.83 13.36 5.28 0.07 -10.76 16 11 N -0.67 -9.72 5.18 -14.18 -0.07 -9.79 16 12 C 0.05 0.96 6.30 -83.61 -0.53 0.44 16 13 C -0.09 -1.70 9.96 -39.41 -0.39 -2.09 16 14 C -0.22 -4.77 9.16 -39.42 -0.36 -5.13 16 15 C 0.15 3.60 6.65 -39.09 -0.26 3.34 16 16 O -0.18 -5.16 9.76 0.00 0.00 -5.16 16 17 C -0.39 -10.96 9.48 30.88 0.29 -10.67 16 18 H 0.09 2.35 5.20 -52.49 -0.27 2.08 16 19 C 0.04 1.04 5.49 -17.52 -0.10 0.95 16 20 N -0.86 -25.57 13.67 55.48 0.76 -24.81 16 21 Si 0.94 20.60 29.55 -169.99 -5.02 15.58 16 22 H -0.27 -5.58 7.11 56.52 0.40 -5.17 16 23 H -0.28 -5.95 7.11 56.52 0.40 -5.55 16 24 H -0.28 -5.92 7.11 56.52 0.40 -5.52 16 25 C -0.18 -4.01 9.98 -39.42 -0.39 -4.40 16 26 C -0.07 -1.36 8.69 -39.41 -0.34 -1.70 16 27 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 28 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 29 H 0.06 0.41 8.14 -51.93 -0.42 -0.02 16 30 H 0.38 2.97 9.05 45.56 0.41 3.39 16 31 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 32 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 33 H 0.07 0.52 8.07 -51.93 -0.42 0.11 16 34 H 0.09 1.14 7.10 -51.93 -0.37 0.77 16 35 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 36 H 0.07 0.34 8.07 -51.93 -0.42 -0.08 16 37 H 0.07 0.40 6.44 -51.93 -0.33 0.07 16 38 H 0.40 4.28 6.62 -40.82 -0.27 4.01 16 39 H 0.11 1.60 8.06 -52.49 -0.42 1.18 16 40 H 0.13 2.79 5.63 -52.49 -0.30 2.50 16 41 H 0.27 7.28 8.31 -40.82 -0.34 6.95 16 42 H 0.12 2.63 8.06 -52.49 -0.42 2.21 16 43 H 0.13 2.64 6.22 -52.49 -0.33 2.32 16 LS Contribution 360.04 15.07 5.43 5.43 Total: -1.00 -34.65 360.04 -7.15 -41.80 By element: Atomic # 1 Polarization: 14.96 SS G_CDS: -5.23 Total: 9.73 kcal Atomic # 6 Polarization: -6.63 SS G_CDS: -2.08 Total: -8.71 kcal Atomic # 7 Polarization: -42.11 SS G_CDS: 0.15 Total: -41.96 kcal Atomic # 8 Polarization: -21.48 SS G_CDS: -0.38 Total: -21.86 kcal Atomic # 14 Polarization: 20.60 SS G_CDS: -5.02 Total: 15.58 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -34.65 -7.15 -41.80 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000080166165.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.993 kcal (2) G-P(sol) polarization free energy of solvation -34.653 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.645 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.148 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.800 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.793 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds