Wall clock time and date at job start Tue Mar 31 2020 10:16:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 O 1.42898 * 109.46830 * 2 1 4 4 C 1.35903 * 116.99409 * 179.97438 * 3 2 1 5 5 C 1.38756 * 120.05935 * 0.02640 * 4 3 2 6 6 C 1.38117 * 119.94473 * 179.97438 * 5 4 3 7 7 C 1.38297 * 120.05730 * 359.97438 * 6 5 4 8 8 N 1.48001 * 119.94312 * 180.02562 * 7 6 5 9 9 O 1.21798 * 120.00085 * 0.02562 * 8 7 6 10 10 O 1.21804 * 119.99837 * 179.97438 * 8 7 6 11 11 C 1.38243 * 120.10771 * 359.79538 * 7 6 5 12 12 C 1.38164 * 120.05584 * 0.45886 * 11 7 6 13 13 C 1.50704 * 120.02794 * 179.79522 * 12 11 7 14 14 N 1.46901 * 109.47185 * 259.72945 * 13 12 11 15 15 C 1.46895 * 111.00524 * 66.04080 * 14 13 12 16 16 C 1.53001 * 109.46953 * 63.27040 * 15 14 13 17 17 C 1.46900 * 110.99979 * 189.99906 * 14 13 12 18 18 C 1.50701 * 109.46953 * 169.58111 * 17 14 13 19 19 H 1.08003 * 120.00217 * 354.97051 * 18 17 14 20 20 C 1.37880 * 119.99757 * 174.96528 * 18 17 14 21 21 N 1.31513 * 120.00046 * 0.02562 * 20 18 17 22 22 Si 1.86800 * 119.99684 * 180.02562 * 20 18 17 23 23 H 1.48494 * 109.47749 * 59.99709 * 22 20 18 24 24 H 1.48502 * 109.46810 * 180.02562 * 22 20 18 25 25 H 1.48510 * 109.47115 * 299.99336 * 22 20 18 26 26 H 1.08998 * 109.47131 * 179.97438 * 1 2 3 27 27 H 1.08999 * 109.47296 * 300.00227 * 1 2 3 28 28 H 1.08998 * 109.46665 * 60.00070 * 1 2 3 29 29 H 1.09003 * 109.46855 * 240.00363 * 2 1 3 30 30 H 1.08998 * 109.46665 * 119.99930 * 2 1 3 31 31 H 1.08003 * 120.02338 * 359.97438 * 5 4 3 32 32 H 1.08001 * 119.97219 * 180.02562 * 6 5 4 33 33 H 1.08000 * 119.96953 * 180.23562 * 11 7 6 34 34 H 1.08992 * 109.47439 * 139.72093 * 13 12 11 35 35 H 1.09003 * 109.47258 * 19.72216 * 13 12 11 36 36 H 1.09001 * 109.47521 * 183.27651 * 15 14 13 37 37 H 1.09000 * 109.46967 * 303.27700 * 15 14 13 38 38 H 1.09004 * 109.47041 * 180.61017 * 16 15 14 39 39 H 1.09001 * 109.47437 * 300.61454 * 16 15 14 40 40 H 1.09002 * 109.46478 * 60.61629 * 16 15 14 41 41 H 1.08997 * 109.47012 * 289.58094 * 17 14 13 42 42 H 1.09003 * 109.47081 * 49.58424 * 17 14 13 43 43 H 0.97004 * 119.99543 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3536 1.5253 0.0005 5 6 4.2000 0.4257 0.0005 6 6 5.5689 0.6093 0.0005 7 6 6.0963 1.8878 0.0000 8 7 7.5635 2.0817 -0.0005 9 8 8.3054 1.1157 -0.0010 10 8 8.0291 3.2072 -0.0014 11 6 5.2552 2.9849 -0.0047 12 6 3.8851 2.8065 0.0005 13 6 2.9688 4.0030 0.0000 14 7 2.4797 4.2459 1.3637 15 6 3.5777 4.6469 2.2533 16 6 4.1649 5.9752 1.7718 17 6 1.4062 5.2487 1.3673 18 6 0.7585 5.2863 2.7274 19 1 1.0534 4.5762 3.4859 20 6 -0.2105 6.2275 3.0037 21 7 -0.5698 7.0920 2.0800 22 14 -1.0129 6.2746 4.6899 23 1 0.0245 6.5132 5.7254 24 1 -2.0149 7.3699 4.7308 25 1 -1.6868 4.9779 4.9539 26 1 -0.3633 -1.0276 -0.0005 27 1 -0.3634 0.5139 0.8899 28 1 -0.3632 0.5138 -0.8900 29 1 1.8933 -0.5138 -0.8901 30 1 1.8933 -0.5138 0.8900 31 1 3.7885 -0.5729 0.0005 32 1 6.2280 -0.2462 0.0001 33 1 5.6694 3.9823 -0.0090 34 1 2.1232 3.8128 -0.6608 35 1 3.5147 4.8786 -0.3514 36 1 3.1986 4.7639 3.2685 37 1 4.3534 3.8812 2.2411 38 1 4.9867 6.2674 2.4255 39 1 4.5342 5.8611 0.7526 40 1 3.3919 6.7435 1.7943 41 1 1.8238 6.2287 1.1364 42 1 0.6606 4.9854 0.6170 43 1 -1.2513 7.7543 2.2746 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000081515306.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:16:54 Heat of formation + Delta-G solvation = -14.018696 kcal Electronic energy + Delta-G solvation = -26016.307565 eV Core-core repulsion = 22258.435605 eV Total energy + Delta-G solvation = -3757.871960 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 308.157 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -42.10895 -40.61686 -38.12542 -37.05050 -36.47546 -33.02073 -32.35872 -31.67880 -30.72813 -29.47140 -27.33347 -26.12026 -24.96606 -24.15644 -23.20993 -21.88924 -21.69365 -19.69650 -18.63854 -18.54444 -18.33919 -17.45468 -16.40049 -16.33981 -16.23225 -15.08373 -15.06906 -14.82436 -14.36452 -14.03757 -13.69109 -13.52884 -13.41593 -12.85937 -12.66050 -12.44414 -12.34809 -11.96385 -11.84597 -11.56554 -11.49559 -11.21523 -11.14976 -11.08986 -11.08692 -11.03102 -10.95142 -10.71319 -10.55528 -10.11398 -9.82931 -9.44444 -9.26164 -8.67476 -8.45603 -7.25756 -6.05606 -4.06495 -0.05926 0.82587 1.42287 1.49509 2.89195 3.19476 3.30344 3.34905 3.37577 4.21209 4.30761 4.40000 4.55082 4.70404 4.73427 4.84369 4.99545 5.03238 5.07877 5.30046 5.30793 5.44298 5.51724 5.60585 5.68253 5.69505 5.75292 5.84413 5.91809 6.03653 6.10279 6.16736 6.21535 6.41085 6.46352 6.66394 6.86170 7.08284 7.25049 7.38711 7.72363 7.76160 8.03969 8.13460 8.49627 9.00787 9.57484 11.04933 Molecular weight = 308.16amu Principal moments of inertia in cm(-1) A = 0.013397 B = 0.004326 C = 0.003500 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2089.544813 B = 6470.534908 C = 7997.938650 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.049 3.951 3 O -0.277 6.277 4 C 0.209 3.791 5 C -0.217 4.217 6 C -0.018 4.018 7 C -0.090 4.090 8 N 0.040 4.960 9 O -0.178 6.178 10 O -0.170 6.170 11 C -0.015 4.015 12 C -0.094 4.094 13 C 0.094 3.906 14 N -0.524 5.524 15 C 0.059 3.941 16 C -0.190 4.190 17 C 0.191 3.809 18 C -0.504 4.504 19 H 0.061 0.939 20 C 0.057 3.943 21 N -0.899 5.899 22 Si 0.896 3.104 23 H -0.277 1.277 24 H -0.288 1.288 25 H -0.277 1.277 26 H 0.077 0.923 27 H 0.075 0.925 28 H 0.068 0.932 29 H 0.062 0.938 30 H 0.066 0.934 31 H 0.148 0.852 32 H 0.151 0.849 33 H 0.155 0.845 34 H 0.086 0.914 35 H 0.043 0.957 36 H 0.082 0.918 37 H 0.046 0.954 38 H 0.049 0.951 39 H 0.043 0.957 40 H 0.072 0.928 41 H 0.005 0.995 42 H 0.026 0.974 43 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.079 -14.292 -6.323 17.157 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.026 4.026 3 O -0.187 6.187 4 C 0.160 3.840 5 C -0.237 4.237 6 C -0.038 4.038 7 C -0.174 4.174 8 N 0.556 4.444 9 O -0.390 6.390 10 O -0.384 6.384 11 C -0.034 4.034 12 C -0.096 4.096 13 C -0.034 4.034 14 N -0.248 5.248 15 C -0.070 4.070 16 C -0.249 4.249 17 C 0.066 3.934 18 C -0.543 4.543 19 H 0.079 0.921 20 C -0.144 4.144 21 N -0.538 5.538 22 Si 0.724 3.276 23 H -0.203 1.203 24 H -0.214 1.214 25 H -0.203 1.203 26 H 0.095 0.905 27 H 0.094 0.906 28 H 0.087 0.913 29 H 0.081 0.919 30 H 0.084 0.916 31 H 0.166 0.834 32 H 0.169 0.831 33 H 0.172 0.828 34 H 0.104 0.896 35 H 0.061 0.939 36 H 0.101 0.899 37 H 0.065 0.935 38 H 0.068 0.932 39 H 0.062 0.938 40 H 0.091 0.909 41 H 0.022 0.978 42 H 0.044 0.956 43 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 5.852 -14.533 -6.173 16.840 hybrid contribution 0.355 0.650 0.630 0.972 sum 6.207 -13.883 -5.543 16.187 Atomic orbital electron populations 1.21773 0.92016 1.02698 1.04548 1.22962 0.96839 0.81478 1.01290 1.86359 1.17376 1.29464 1.85518 1.19157 0.83485 0.93125 0.88225 1.21213 0.92533 0.99256 1.10678 1.20684 0.95376 0.95320 0.92413 1.20857 0.79208 0.96519 1.20835 1.43527 1.03597 1.00320 0.96955 1.94494 1.57356 1.32814 1.54381 1.94539 1.79562 1.10385 1.53942 1.20786 0.91548 0.98825 0.92287 1.19369 0.92391 0.94125 1.03758 1.20920 0.96406 0.91791 0.94258 1.62403 1.09628 1.48039 1.04689 1.21984 0.92517 0.93532 0.98923 1.22403 1.01356 1.01015 1.00105 1.19786 0.87638 0.87984 0.97944 1.21067 1.20236 1.15074 0.97880 0.92083 1.24953 0.96911 0.95509 0.97074 1.69941 1.31579 1.18915 1.33386 0.86603 0.79118 0.77538 0.84385 1.20313 1.21381 1.20264 0.90460 0.90566 0.91320 0.91944 0.91590 0.83404 0.83137 0.82754 0.89580 0.93868 0.89944 0.93547 0.93227 0.93780 0.90927 0.97758 0.95604 0.92894 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.38 10.28 37.16 0.38 -1.00 16 2 C 0.05 0.46 5.46 37.16 0.20 0.66 16 3 O -0.28 -3.75 9.37 -19.44 -0.18 -3.93 16 4 C 0.21 2.74 6.66 -39.22 -0.26 2.48 16 5 C -0.22 -2.25 9.04 -39.43 -0.36 -2.60 16 6 C -0.02 -0.20 9.55 -39.60 -0.38 -0.58 16 7 C -0.09 -1.20 6.85 -79.93 -0.55 -1.75 16 8 N 0.04 0.60 4.45 33.97 0.15 0.75 16 9 O -0.18 -2.67 18.44 -29.46 -0.54 -3.21 16 10 O -0.17 -2.71 18.44 -29.46 -0.54 -3.25 16 11 C -0.01 -0.20 8.17 -39.61 -0.32 -0.52 16 12 C -0.09 -1.36 4.58 -104.47 -0.48 -1.84 16 13 C 0.09 1.59 4.57 -4.97 -0.02 1.56 16 14 N -0.52 -10.57 4.69 -237.52 -1.11 -11.69 16 15 C 0.06 1.11 5.64 -3.83 -0.02 1.09 16 16 C -0.19 -3.34 9.25 37.16 0.34 -3.00 16 17 C 0.19 4.69 4.50 -4.98 -0.02 4.67 16 18 C -0.50 -13.58 8.41 -34.44 -0.29 -13.87 16 19 H 0.06 1.65 7.33 -52.48 -0.38 1.26 16 20 C 0.06 1.56 5.46 -17.82 -0.10 1.46 16 21 N -0.90 -25.90 13.29 55.43 0.74 -25.16 16 22 Si 0.90 21.18 29.54 -169.99 -5.02 16.16 16 23 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 24 H -0.29 -6.78 7.11 56.52 0.40 -6.37 16 25 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 26 H 0.08 0.50 8.14 -51.93 -0.42 0.07 16 27 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 28 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 29 H 0.06 0.44 7.66 -51.93 -0.40 0.04 16 30 H 0.07 0.54 7.66 -51.93 -0.40 0.14 16 31 H 0.15 1.07 6.30 -52.48 -0.33 0.74 16 32 H 0.15 1.35 7.61 -52.49 -0.40 0.95 16 33 H 0.15 2.06 7.29 -52.49 -0.38 1.68 16 34 H 0.09 1.48 7.64 -51.93 -0.40 1.08 16 35 H 0.04 0.70 5.95 -51.93 -0.31 0.39 16 36 H 0.08 1.71 6.97 -51.93 -0.36 1.35 16 37 H 0.05 0.80 6.47 -51.93 -0.34 0.46 16 38 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 39 H 0.04 0.70 6.03 -51.93 -0.31 0.39 16 40 H 0.07 1.48 6.31 -51.93 -0.33 1.15 16 41 H 0.00 0.12 6.01 -51.93 -0.31 -0.19 16 42 H 0.03 0.68 7.92 -51.93 -0.41 0.27 16 43 H 0.26 7.19 8.31 -40.82 -0.34 6.85 16 LS Contribution 356.01 15.07 5.36 5.36 Total: -1.00 -30.21 356.01 -8.91 -39.11 By element: Atomic # 1 Polarization: 4.99 SS G_CDS: -5.89 Total: -0.90 kcal Atomic # 6 Polarization: -11.38 SS G_CDS: -1.87 Total: -13.25 kcal Atomic # 7 Polarization: -35.87 SS G_CDS: -0.23 Total: -36.10 kcal Atomic # 8 Polarization: -9.13 SS G_CDS: -1.27 Total: -10.40 kcal Atomic # 14 Polarization: 21.18 SS G_CDS: -5.02 Total: 16.16 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -30.21 -8.91 -39.11 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000081515306.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.095 kcal (2) G-P(sol) polarization free energy of solvation -30.205 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.110 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.909 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.114 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.019 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds