Wall clock time and date at job start Tue Mar 31 2020 09:19:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.08995 * 109.47071 * 2 1 4 4 O 1.42891 * 109.46862 * 239.99403 * 2 1 3 5 5 C 1.53005 * 109.46810 * 119.99487 * 2 1 3 6 6 C 1.52996 * 109.46980 * 184.99825 * 5 2 1 7 7 N 1.46501 * 109.47273 * 180.02562 * 6 5 2 8 8 C 1.46501 * 119.99680 * 269.99922 * 7 6 5 9 9 C 1.34779 * 120.00160 * 90.00045 * 7 6 5 10 10 O 1.21582 * 119.99873 * 359.97438 * 9 7 6 11 11 N 1.34779 * 119.99853 * 180.02562 * 9 7 6 12 12 C 1.39942 * 119.99636 * 175.51963 * 11 9 7 13 13 C 1.38960 * 120.03180 * 214.84605 * 12 11 9 14 14 C 1.38167 * 120.06290 * 179.74609 * 13 12 11 15 15 C 1.38165 * 120.13721 * 0.55548 * 14 13 12 16 16 C 1.38905 * 120.07057 * 359.70123 * 15 14 13 17 17 O 1.35750 * 120.03040 * 180.02562 * 16 15 14 18 18 C 1.34828 * 117.00252 * 5.35034 * 17 16 15 19 19 H 1.07997 * 119.99988 * 354.96763 * 18 17 16 20 20 C 1.38661 * 119.99913 * 174.96940 * 18 17 16 21 21 N 1.31558 * 119.99843 * 359.97438 * 20 18 17 22 22 Si 1.86798 * 119.99908 * 180.02562 * 20 18 17 23 23 H 1.48498 * 109.47119 * 359.97438 * 22 20 18 24 24 H 1.48496 * 109.47286 * 119.99509 * 22 20 18 25 25 H 1.48506 * 109.47086 * 239.99969 * 22 20 18 26 26 C 1.38703 * 120.03600 * 35.12519 * 12 11 9 27 27 H 1.09002 * 109.46960 * 300.00496 * 1 2 3 28 28 H 1.08998 * 109.46950 * 60.00176 * 1 2 3 29 29 H 1.08992 * 109.47347 * 180.02562 * 1 2 3 30 30 H 0.96701 * 114.00409 * 299.99552 * 4 2 1 31 31 H 1.09001 * 109.47110 * 64.99659 * 5 2 1 32 32 H 1.08998 * 109.47073 * 304.99717 * 5 2 1 33 33 H 1.08998 * 109.47130 * 299.99857 * 6 5 2 34 34 H 1.09001 * 109.47335 * 59.99972 * 6 5 2 35 35 H 1.09001 * 109.47168 * 90.00050 * 8 7 6 36 36 H 1.09001 * 109.46933 * 209.99596 * 8 7 6 37 37 H 1.08996 * 109.47518 * 329.99838 * 8 7 6 38 38 H 0.97000 * 119.99767 * 355.51934 * 11 9 7 39 39 H 1.08000 * 119.96759 * 0.02562 * 13 12 11 40 40 H 1.08005 * 119.92690 * 180.27296 * 14 13 12 41 41 H 1.08002 * 119.96334 * 179.71837 * 15 14 13 42 42 H 0.97004 * 119.99668 * 180.02562 * 21 20 18 43 43 H 1.08001 * 120.07296 * 359.94913 * 26 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 8 2.0063 -0.6737 -1.1667 5 6 2.0400 -0.7212 1.2494 6 6 3.5648 -0.6133 1.3138 7 7 4.0532 -1.3043 2.5097 8 6 4.1931 -0.5738 3.7719 9 6 4.3737 -2.6120 2.4488 10 8 4.2571 -3.2183 1.4014 11 7 4.8225 -3.2478 3.5492 12 6 5.0661 -4.6253 3.5108 13 6 4.8195 -5.4067 4.6332 14 6 5.0548 -6.7676 4.5944 15 6 5.5466 -7.3540 3.4441 16 6 5.8002 -6.5775 2.3206 17 8 6.2829 -7.1546 1.1907 18 6 6.3895 -8.4987 1.1873 19 1 6.1742 -9.0597 2.0846 20 6 6.7756 -9.1606 0.0316 21 7 7.0374 -8.4771 -1.0616 22 14 6.9227 -11.0227 0.0267 23 1 6.5757 -11.5502 1.3707 24 1 5.9934 -11.5900 -0.9832 25 1 8.3164 -11.4083 -0.3112 26 6 5.5594 -5.2112 2.3545 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0276 0.0005 30 1 1.7210 -1.5953 -1.2327 31 1 1.7516 -1.7714 1.2058 32 1 1.6054 -0.2615 2.1370 33 1 3.9994 -1.0729 0.4262 34 1 3.8532 0.4370 1.3574 35 1 3.2627 -0.6409 4.3357 36 1 5.0039 -1.0095 4.3558 37 1 4.4170 0.4723 3.5634 38 1 4.9767 -2.7505 4.3676 39 1 4.4392 -4.9504 5.5352 40 1 4.8581 -7.3735 5.4665 41 1 5.7338 -8.4174 3.4183 42 1 7.3072 -8.9402 -1.8701 43 1 5.7554 -4.6055 1.4820 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000085563098.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:19:51 Heat of formation + Delta-G solvation = -71.937141 kcal Electronic energy + Delta-G solvation = -25134.502060 eV Core-core repulsion = 21374.118568 eV Total energy + Delta-G solvation = -3760.383492 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 308.157 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.50250 -38.82041 -38.02242 -36.67709 -35.50754 -34.13010 -32.28612 -32.14911 -29.80088 -29.24506 -28.19367 -26.73127 -25.25493 -24.04671 -22.07300 -21.64970 -21.23662 -19.72828 -18.44007 -17.89491 -16.98920 -16.67159 -16.14179 -16.00964 -15.43996 -14.99878 -14.96394 -14.46200 -14.17001 -13.96286 -13.79243 -13.59246 -13.40605 -13.30646 -13.00411 -12.79014 -12.50594 -12.42689 -12.19407 -12.02318 -11.69252 -11.45606 -11.15200 -11.02556 -10.99008 -10.96829 -10.73314 -10.39575 -10.29103 -9.85606 -9.64278 -9.16348 -8.77495 -8.72940 -7.60388 -7.12124 -6.36462 -3.95537 2.14624 2.40641 2.62769 3.16944 3.18477 3.24356 3.36970 3.86708 4.05074 4.21561 4.58213 4.65398 4.74355 4.80481 4.85503 5.03478 5.09305 5.18044 5.30769 5.34690 5.36317 5.39244 5.49459 5.56948 5.67542 5.83503 5.87666 5.96064 6.02767 6.15326 6.28305 6.33711 6.49711 6.62987 6.89640 7.08147 7.12734 7.23902 7.40567 7.53702 7.55522 7.88141 8.01338 8.08835 8.71706 9.08446 9.80864 10.81577 Molecular weight = 308.16amu Principal moments of inertia in cm(-1) A = 0.014740 B = 0.003232 C = 0.002797 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1899.095938 B = 8662.072227 C =10009.267359 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.105 3.895 3 H 0.096 0.904 4 O -0.563 6.563 5 C -0.169 4.169 6 C 0.137 3.863 7 N -0.636 5.636 8 C 0.079 3.921 9 C 0.699 3.301 10 O -0.555 6.555 11 N -0.682 5.682 12 C 0.191 3.809 13 C -0.238 4.238 14 C -0.059 4.059 15 C -0.247 4.247 16 C 0.167 3.833 17 O -0.174 6.174 18 C -0.391 4.391 19 H 0.093 0.907 20 C 0.038 3.962 21 N -0.860 5.860 22 Si 0.941 3.059 23 H -0.267 1.267 24 H -0.276 1.276 25 H -0.277 1.277 26 C -0.186 4.186 27 H 0.063 0.937 28 H 0.063 0.937 29 H 0.059 0.941 30 H 0.381 0.619 31 H 0.073 0.927 32 H 0.069 0.931 33 H 0.094 0.906 34 H 0.074 0.926 35 H 0.054 0.946 36 H 0.065 0.935 37 H 0.074 0.926 38 H 0.400 0.600 39 H 0.106 0.894 40 H 0.111 0.889 41 H 0.127 0.873 42 H 0.269 0.731 43 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.418 17.102 10.001 21.936 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.243 4.243 2 C 0.045 3.955 3 H 0.114 0.886 4 O -0.369 6.369 5 C -0.208 4.208 6 C 0.014 3.986 7 N -0.374 5.374 8 C -0.065 4.065 9 C 0.401 3.599 10 O -0.429 6.429 11 N -0.331 5.331 12 C 0.097 3.903 13 C -0.259 4.259 14 C -0.078 4.078 15 C -0.267 4.267 16 C 0.113 3.887 17 O -0.077 6.077 18 C -0.467 4.467 19 H 0.110 0.890 20 C -0.166 4.166 21 N -0.495 5.495 22 Si 0.766 3.234 23 H -0.191 1.191 24 H -0.202 1.202 25 H -0.202 1.202 26 C -0.207 4.207 27 H 0.082 0.918 28 H 0.082 0.918 29 H 0.078 0.922 30 H 0.229 0.771 31 H 0.092 0.908 32 H 0.088 0.912 33 H 0.112 0.888 34 H 0.092 0.908 35 H 0.072 0.928 36 H 0.084 0.916 37 H 0.092 0.908 38 H 0.236 0.764 39 H 0.124 0.876 40 H 0.129 0.871 41 H 0.145 0.855 42 H 0.079 0.921 43 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -9.091 17.326 8.637 21.388 hybrid contribution -0.264 -1.140 0.853 1.448 sum -9.355 16.186 9.489 20.966 Atomic orbital electron populations 1.22502 0.96536 1.02724 1.02500 1.21811 0.92705 0.96486 0.84460 0.88567 1.86556 1.77277 1.29627 1.43463 1.22723 0.97062 1.02354 0.98633 1.21303 0.93187 0.96246 0.87904 1.47084 1.70178 1.08528 1.11602 1.21725 1.01227 0.97518 0.85983 1.15927 0.78410 0.81326 0.84271 1.91015 1.58727 1.64674 1.28515 1.42645 1.69070 1.07749 1.13614 1.16974 0.97727 0.80692 0.94869 1.20229 1.13678 0.94002 0.98007 1.20475 0.96918 0.93540 0.96824 1.21170 1.10582 1.00952 0.94008 1.19141 0.90661 0.91749 0.87166 1.83994 1.70054 1.22833 1.30850 1.21389 1.47845 0.78738 0.98751 0.88978 1.25303 0.96651 1.00417 0.94246 1.70071 1.42354 1.35971 1.01122 0.85648 0.78232 0.80780 0.78737 1.19119 1.20180 1.20213 1.20205 1.07835 0.93271 0.99428 0.91771 0.91807 0.92186 0.77128 0.90822 0.91239 0.88788 0.90796 0.92762 0.91598 0.90765 0.76359 0.87569 0.87106 0.85503 0.92125 0.84682 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.37 9.53 37.16 0.35 -1.01 16 2 C 0.11 0.92 3.59 -26.72 -0.10 0.83 16 3 H 0.10 0.74 8.14 -51.93 -0.42 0.32 16 4 O -0.56 -6.38 12.87 -35.23 -0.45 -6.83 16 5 C -0.17 -1.61 5.22 -26.73 -0.14 -1.75 16 6 C 0.14 1.49 5.35 -4.04 -0.02 1.47 16 7 N -0.64 -7.52 2.87 -187.35 -0.54 -8.06 16 8 C 0.08 0.57 10.29 59.85 0.62 1.19 16 9 C 0.70 11.61 8.12 -86.91 -0.71 10.90 16 10 O -0.55 -11.95 13.36 5.29 0.07 -11.88 16 11 N -0.68 -10.51 5.22 -14.24 -0.07 -10.58 16 12 C 0.19 3.71 6.30 -83.72 -0.53 3.18 16 13 C -0.24 -4.17 9.96 -39.34 -0.39 -4.57 16 14 C -0.06 -1.09 10.03 -39.63 -0.40 -1.49 16 15 C -0.25 -5.56 9.17 -39.36 -0.36 -5.93 16 16 C 0.17 4.32 6.64 -39.14 -0.26 4.06 16 17 O -0.17 -5.26 9.75 0.05 0.00 -5.26 16 18 C -0.39 -11.32 9.49 30.89 0.29 -11.03 16 19 H 0.09 2.45 5.20 -52.49 -0.27 2.18 16 20 C 0.04 1.08 5.49 -17.51 -0.10 0.99 16 21 N -0.86 -26.17 13.67 55.48 0.76 -25.41 16 22 Si 0.94 21.09 29.55 -169.99 -5.02 16.06 16 23 H -0.27 -5.69 7.11 56.52 0.40 -5.29 16 24 H -0.28 -6.07 7.11 56.52 0.40 -5.67 16 25 H -0.28 -6.05 7.11 56.52 0.40 -5.64 16 26 C -0.19 -4.43 8.64 -39.21 -0.34 -4.76 16 27 H 0.06 0.40 8.14 -51.93 -0.42 -0.03 16 28 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 29 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 30 H 0.38 3.65 9.05 45.56 0.41 4.07 16 31 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 32 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 33 H 0.09 1.33 7.10 -51.93 -0.37 0.96 16 34 H 0.07 0.61 7.89 -51.93 -0.41 0.20 16 35 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 36 H 0.07 0.42 6.30 -51.93 -0.33 0.09 16 37 H 0.07 0.39 7.89 -51.93 -0.41 -0.02 16 38 H 0.40 4.50 6.52 -40.82 -0.27 4.23 16 39 H 0.11 1.50 8.06 -52.49 -0.42 1.07 16 40 H 0.11 1.69 8.06 -52.48 -0.42 1.27 16 41 H 0.13 2.83 5.63 -52.49 -0.30 2.53 16 42 H 0.27 7.46 8.31 -40.82 -0.34 7.12 16 43 H 0.14 3.49 6.23 -52.49 -0.33 3.17 16 LS Contribution 359.66 15.07 5.42 5.42 Total: -1.00 -36.20 359.66 -7.12 -43.32 By element: Atomic # 1 Polarization: 16.35 SS G_CDS: -5.20 Total: 11.15 kcal Atomic # 6 Polarization: -5.85 SS G_CDS: -2.07 Total: -7.92 kcal Atomic # 7 Polarization: -44.20 SS G_CDS: 0.15 Total: -44.05 kcal Atomic # 8 Polarization: -23.59 SS G_CDS: -0.38 Total: -23.97 kcal Atomic # 14 Polarization: 21.09 SS G_CDS: -5.02 Total: 16.06 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -36.20 -7.12 -43.32 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000085563098.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.617 kcal (2) G-P(sol) polarization free energy of solvation -36.204 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.821 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.116 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.320 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.937 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds