Wall clock time and date at job start Tue Mar 31 2020 09:19:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09006 * 109.47441 * 2 1 4 4 O 1.42902 * 109.47324 * 120.00191 * 2 1 3 5 5 C 1.53001 * 109.47339 * 240.00238 * 2 1 3 6 6 C 1.53004 * 109.47257 * 175.00026 * 5 2 1 7 7 N 1.46502 * 109.47142 * 179.97438 * 6 5 2 8 8 C 1.46496 * 120.00225 * 270.00165 * 7 6 5 9 9 C 1.34779 * 119.99520 * 89.99732 * 7 6 5 10 10 O 1.21584 * 120.00680 * 0.02562 * 9 7 6 11 11 N 1.34784 * 119.99504 * 179.97438 * 9 7 6 12 12 C 1.39943 * 119.99583 * 174.68844 * 11 9 7 13 13 C 1.38956 * 120.03783 * 326.35305 * 12 11 9 14 14 C 1.38150 * 120.06780 * 180.02562 * 13 12 11 15 15 C 1.38171 * 120.14083 * 359.69647 * 14 13 12 16 16 C 1.38909 * 120.06288 * 0.56097 * 15 14 13 17 17 O 1.35755 * 120.03092 * 179.74571 * 16 15 14 18 18 C 1.34830 * 117.00008 * 173.81915 * 17 16 15 19 19 H 1.07999 * 119.99965 * 354.59936 * 18 17 16 20 20 C 1.38652 * 120.00115 * 174.59132 * 18 17 16 21 21 N 1.31558 * 119.99722 * 0.02562 * 20 18 17 22 22 Si 1.86794 * 120.00292 * 179.97438 * 20 18 17 23 23 H 1.48507 * 109.46947 * 90.00122 * 22 20 18 24 24 H 1.48500 * 109.47376 * 210.00147 * 22 20 18 25 25 H 1.48503 * 109.47187 * 330.00708 * 22 20 18 26 26 C 1.38708 * 120.03003 * 146.37751 * 12 11 9 27 27 H 1.08994 * 109.47251 * 179.97438 * 1 2 3 28 28 H 1.08998 * 109.47336 * 300.00164 * 1 2 3 29 29 H 1.09003 * 109.46946 * 59.99756 * 1 2 3 30 30 H 0.96692 * 113.99717 * 59.99744 * 4 2 1 31 31 H 1.08996 * 109.46941 * 54.99921 * 5 2 1 32 32 H 1.09000 * 109.47218 * 295.00038 * 5 2 1 33 33 H 1.08999 * 109.47094 * 59.99559 * 6 5 2 34 34 H 1.09000 * 109.47016 * 300.00135 * 6 5 2 35 35 H 1.08998 * 109.47001 * 270.00532 * 8 7 6 36 36 H 1.09006 * 109.47096 * 29.99774 * 8 7 6 37 37 H 1.08996 * 109.47544 * 149.99687 * 8 7 6 38 38 H 0.96998 * 119.99836 * 354.69062 * 11 9 7 39 39 H 1.07997 * 119.96194 * 0.02562 * 13 12 11 40 40 H 1.08003 * 119.93470 * 179.97438 * 14 13 12 41 41 H 1.07999 * 119.97010 * 180.29424 * 15 14 13 42 42 H 0.97001 * 120.00174 * 179.97438 * 21 20 18 43 43 H 1.07992 * 120.07104 * 359.97438 * 26 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 8 2.0064 -0.6737 1.1668 5 6 2.0400 -0.7212 -1.2493 6 6 3.5649 -0.6132 -1.3137 7 7 4.0533 -1.3043 -2.5096 8 6 4.4017 -2.7257 -2.4433 9 6 4.1820 -0.6323 -3.6708 10 8 3.8932 0.5474 -3.7258 11 7 4.6318 -1.2680 -4.7709 12 6 4.6605 -0.6019 -6.0013 13 6 3.6826 0.3368 -6.3070 14 6 3.7100 0.9944 -7.5217 15 6 4.7127 0.7258 -8.4335 16 6 5.6901 -0.2154 -8.1360 17 8 6.6721 -0.4825 -9.0345 18 6 7.6594 -1.3090 -8.6346 19 1 7.6922 -1.6562 -7.6124 20 6 8.6325 -1.7134 -9.5356 21 7 8.5928 -1.2902 -10.7807 22 14 10.0008 -2.8580 -8.9815 23 1 9.5797 -4.2675 -9.1845 24 1 11.2251 -2.5876 -9.7772 25 1 10.2853 -2.6289 -7.5421 26 6 5.6649 -0.8783 -6.9171 27 1 -0.3633 -1.0276 -0.0005 28 1 -0.3634 0.5138 0.8899 29 1 -0.3633 0.5139 -0.8900 30 1 1.7210 -1.5952 1.2328 31 1 1.6054 -0.2617 -2.1369 32 1 1.7517 -1.7715 -1.2057 33 1 3.9995 -1.0727 -0.4259 34 1 3.8532 0.4370 -1.3573 35 1 5.4533 -2.8299 -2.1760 36 1 3.7851 -3.2162 -1.6899 37 1 4.2259 -3.1886 -3.4142 38 1 4.9356 -2.1872 -4.7097 39 1 2.9003 0.5524 -5.5943 40 1 2.9486 1.7232 -7.7572 41 1 4.7342 1.2449 -9.3803 42 1 9.2738 -1.5728 -11.4110 43 1 6.4261 -1.6074 -6.6818 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000085563102.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:19:56 Heat of formation + Delta-G solvation = -76.033384 kcal Electronic energy + Delta-G solvation = -24966.138375 eV Core-core repulsion = 21205.577256 eV Total energy + Delta-G solvation = -3760.561119 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 308.157 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.56901 -38.90064 -38.20949 -36.68232 -35.53246 -34.31258 -32.45152 -32.18379 -29.91002 -29.07697 -28.35509 -26.80181 -25.30703 -24.15810 -21.96611 -21.78839 -21.44183 -19.69059 -18.45276 -17.89230 -17.24258 -16.82882 -16.18172 -16.11101 -15.56052 -15.09813 -14.93749 -14.57862 -14.30399 -13.99986 -13.80971 -13.62574 -13.40645 -13.34181 -13.16412 -12.94954 -12.66064 -12.35295 -12.28346 -12.09745 -11.72418 -11.55857 -11.16923 -11.14013 -11.09446 -11.01248 -10.73075 -10.48911 -10.43172 -9.99349 -9.61071 -9.46710 -8.82634 -8.77892 -7.68214 -7.11563 -6.43906 -4.03469 2.07648 2.41405 2.59500 3.11244 3.12421 3.17383 3.29110 3.87808 3.96690 4.02125 4.44269 4.62388 4.65455 4.70778 4.84074 4.96056 5.05993 5.11832 5.23313 5.27224 5.30244 5.37167 5.38848 5.54436 5.69865 5.72799 5.82931 5.90131 6.03082 6.10945 6.20281 6.28353 6.38979 6.58685 6.80578 7.03119 7.12015 7.24161 7.26735 7.35588 7.44951 7.84889 7.95651 8.00887 8.62409 9.01592 9.72675 10.74268 Molecular weight = 308.16amu Principal moments of inertia in cm(-1) A = 0.022122 B = 0.002814 C = 0.002541 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1265.400793 B = 9948.751804 C =11017.139492 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.104 3.896 3 H 0.102 0.898 4 O -0.564 6.564 5 C -0.167 4.167 6 C 0.138 3.862 7 N -0.635 5.635 8 C 0.077 3.923 9 C 0.704 3.296 10 O -0.568 6.568 11 N -0.682 5.682 12 C 0.198 3.802 13 C -0.204 4.204 14 C -0.063 4.063 15 C -0.202 4.202 16 C 0.169 3.831 17 O -0.177 6.177 18 C -0.391 4.391 19 H 0.089 0.911 20 C 0.039 3.961 21 N -0.863 5.863 22 Si 0.940 3.060 23 H -0.274 1.274 24 H -0.277 1.277 25 H -0.268 1.268 26 C -0.258 4.258 27 H 0.057 0.943 28 H 0.063 0.937 29 H 0.067 0.933 30 H 0.372 0.628 31 H 0.079 0.921 32 H 0.064 0.936 33 H 0.081 0.919 34 H 0.085 0.915 35 H 0.057 0.943 36 H 0.073 0.927 37 H 0.068 0.932 38 H 0.402 0.598 39 H 0.119 0.881 40 H 0.115 0.885 41 H 0.118 0.882 42 H 0.270 0.730 43 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.355 -4.203 19.696 23.627 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.242 4.242 2 C 0.044 3.956 3 H 0.120 0.880 4 O -0.370 6.370 5 C -0.206 4.206 6 C 0.014 3.986 7 N -0.373 5.373 8 C -0.067 4.067 9 C 0.406 3.594 10 O -0.444 6.444 11 N -0.330 5.330 12 C 0.104 3.896 13 C -0.226 4.226 14 C -0.082 4.082 15 C -0.222 4.222 16 C 0.115 3.885 17 O -0.080 6.080 18 C -0.467 4.467 19 H 0.107 0.893 20 C -0.165 4.165 21 N -0.498 5.498 22 Si 0.764 3.236 23 H -0.199 1.199 24 H -0.202 1.202 25 H -0.193 1.193 26 C -0.280 4.280 27 H 0.076 0.924 28 H 0.082 0.918 29 H 0.086 0.914 30 H 0.219 0.781 31 H 0.097 0.903 32 H 0.083 0.917 33 H 0.099 0.901 34 H 0.103 0.897 35 H 0.076 0.924 36 H 0.092 0.908 37 H 0.086 0.914 38 H 0.238 0.762 39 H 0.137 0.863 40 H 0.133 0.867 41 H 0.136 0.864 42 H 0.080 0.920 43 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -12.109 -2.730 19.366 23.002 hybrid contribution 0.587 -1.809 0.178 1.910 sum -11.523 -4.539 19.544 23.137 Atomic orbital electron populations 1.22484 0.96309 1.02473 1.02926 1.21888 0.92914 0.96962 0.83812 0.88002 1.86601 1.77176 1.28980 1.44203 1.22707 0.97265 1.01226 0.99418 1.21267 0.92875 0.98928 0.85495 1.47075 1.70144 1.10522 1.09545 1.21753 1.00949 0.81189 1.02817 1.15867 0.78664 0.84891 0.80025 1.90935 1.56055 1.13676 1.83716 1.42763 1.67282 1.16389 1.06578 1.17203 0.94272 0.94817 0.83293 1.20545 1.00951 1.02830 0.98224 1.20520 0.96949 0.97938 0.92751 1.20238 0.97507 1.02822 1.01643 1.19066 0.88730 0.92202 0.88501 1.84021 1.29178 1.58827 1.35996 1.21261 1.02341 1.26182 0.96953 0.89316 1.25268 0.98460 0.97905 0.94879 1.70037 1.34347 1.42184 1.03209 0.85737 0.79526 0.79557 0.78739 1.19940 1.20248 1.19286 1.20774 1.01522 1.08935 0.96762 0.92420 0.91777 0.91365 0.78060 0.90278 0.91690 0.90050 0.89664 0.92396 0.90776 0.91371 0.76200 0.86321 0.86669 0.86409 0.92050 0.85366 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.15 9.53 37.16 0.35 -0.80 16 2 C 0.10 0.76 3.59 -26.73 -0.10 0.67 16 3 H 0.10 0.84 8.14 -51.93 -0.42 0.41 16 4 O -0.56 -4.19 12.88 -35.23 -0.45 -4.65 16 5 C -0.17 -1.37 5.22 -26.73 -0.14 -1.51 16 6 C 0.14 1.36 5.30 -4.04 -0.02 1.33 16 7 N -0.64 -7.19 2.87 -187.35 -0.54 -7.72 16 8 C 0.08 0.58 10.16 59.84 0.61 1.19 16 9 C 0.70 11.09 8.01 -86.91 -0.70 10.39 16 10 O -0.57 -10.96 13.63 5.29 0.07 -10.88 16 11 N -0.68 -10.82 5.17 -14.24 -0.07 -10.89 16 12 C 0.20 3.89 6.27 -83.71 -0.52 3.37 16 13 C -0.20 -4.03 8.65 -39.35 -0.34 -4.37 16 14 C -0.06 -1.21 10.03 -39.64 -0.40 -1.60 16 15 C -0.20 -4.40 9.99 -39.36 -0.39 -4.80 16 16 C 0.17 4.15 6.64 -39.13 -0.26 3.89 16 17 O -0.18 -5.05 9.76 0.03 0.00 -5.05 16 18 C -0.39 -10.88 9.44 30.89 0.29 -10.59 16 19 H 0.09 2.28 5.30 -52.49 -0.28 2.00 16 20 C 0.04 1.07 5.49 -17.52 -0.10 0.97 16 21 N -0.86 -25.26 13.67 55.48 0.76 -24.50 16 22 Si 0.94 20.35 29.55 -169.99 -5.02 15.33 16 23 H -0.27 -5.74 7.11 56.52 0.40 -5.33 16 24 H -0.28 -5.91 7.11 56.52 0.40 -5.51 16 25 H -0.27 -5.60 7.11 56.52 0.40 -5.19 16 26 C -0.26 -5.67 9.04 -39.21 -0.35 -6.03 16 27 H 0.06 0.31 8.14 -51.93 -0.42 -0.12 16 28 H 0.06 0.40 8.14 -51.93 -0.42 -0.03 16 29 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 30 H 0.37 1.43 9.04 45.56 0.41 1.84 16 31 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 32 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 33 H 0.08 0.67 7.75 -51.93 -0.40 0.27 16 34 H 0.08 1.02 7.42 -51.93 -0.39 0.64 16 35 H 0.06 0.41 8.14 -51.93 -0.42 -0.02 16 36 H 0.07 0.40 8.07 -51.93 -0.42 -0.02 16 37 H 0.07 0.49 6.45 -51.93 -0.33 0.16 16 38 H 0.40 5.13 6.63 -40.82 -0.27 4.86 16 39 H 0.12 2.30 6.43 -52.49 -0.34 1.96 16 40 H 0.12 1.84 8.06 -52.48 -0.42 1.42 16 41 H 0.12 2.44 8.06 -52.49 -0.42 2.02 16 42 H 0.27 7.24 8.31 -40.82 -0.34 6.90 16 43 H 0.13 2.76 5.71 -52.49 -0.30 2.46 16 LS Contribution 360.46 15.07 5.43 5.43 Total: -1.00 -34.51 360.46 -7.15 -41.66 By element: Atomic # 1 Polarization: 14.42 SS G_CDS: -5.26 Total: 9.17 kcal Atomic # 6 Polarization: -5.82 SS G_CDS: -2.07 Total: -7.88 kcal Atomic # 7 Polarization: -43.26 SS G_CDS: 0.15 Total: -43.12 kcal Atomic # 8 Polarization: -20.20 SS G_CDS: -0.38 Total: -20.58 kcal Atomic # 14 Polarization: 20.35 SS G_CDS: -5.02 Total: 15.33 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -34.51 -7.15 -41.66 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000085563102.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.374 kcal (2) G-P(sol) polarization free energy of solvation -34.511 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.885 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.148 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.659 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.033 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds