Wall clock time and date at job start Tue Mar 31 2020 09:19:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09006 * 109.47441 * 2 1 4 4 O 1.42902 * 109.47324 * 120.00191 * 2 1 3 5 5 C 1.53001 * 109.47339 * 240.00238 * 2 1 3 6 6 C 1.53004 * 109.47257 * 175.00026 * 5 2 1 7 7 N 1.46502 * 109.47142 * 179.97438 * 6 5 2 8 8 C 1.46496 * 120.00225 * 270.00165 * 7 6 5 9 9 C 1.34779 * 119.99520 * 89.99732 * 7 6 5 10 10 O 1.21584 * 120.00680 * 0.02562 * 9 7 6 11 11 N 1.34784 * 119.99504 * 179.97438 * 9 7 6 12 12 C 1.39943 * 119.99583 * 174.68844 * 11 9 7 13 13 C 1.38956 * 120.03783 * 326.35305 * 12 11 9 14 14 C 1.38150 * 120.06780 * 180.02562 * 13 12 11 15 15 C 1.38171 * 120.14083 * 359.69647 * 14 13 12 16 16 C 1.38909 * 120.06288 * 0.56097 * 15 14 13 17 17 O 1.35755 * 120.03092 * 179.74571 * 16 15 14 18 18 C 1.34830 * 117.00008 * 173.81915 * 17 16 15 19 19 H 1.07999 * 119.99965 * 354.59936 * 18 17 16 20 20 C 1.38652 * 120.00115 * 174.59132 * 18 17 16 21 21 N 1.31558 * 119.99722 * 0.02562 * 20 18 17 22 22 Si 1.86794 * 120.00292 * 179.97438 * 20 18 17 23 23 H 1.48507 * 109.46947 * 90.00122 * 22 20 18 24 24 H 1.48500 * 109.47376 * 210.00147 * 22 20 18 25 25 H 1.48503 * 109.47187 * 330.00708 * 22 20 18 26 26 C 1.38708 * 120.03003 * 146.37751 * 12 11 9 27 27 H 1.08994 * 109.47251 * 179.97438 * 1 2 3 28 28 H 1.08998 * 109.47336 * 300.00164 * 1 2 3 29 29 H 1.09003 * 109.46946 * 59.99756 * 1 2 3 30 30 H 0.96692 * 113.99717 * 59.99744 * 4 2 1 31 31 H 1.08996 * 109.46941 * 54.99921 * 5 2 1 32 32 H 1.09000 * 109.47218 * 295.00038 * 5 2 1 33 33 H 1.08999 * 109.47094 * 59.99559 * 6 5 2 34 34 H 1.09000 * 109.47016 * 300.00135 * 6 5 2 35 35 H 1.08998 * 109.47001 * 270.00532 * 8 7 6 36 36 H 1.09006 * 109.47096 * 29.99774 * 8 7 6 37 37 H 1.08996 * 109.47544 * 149.99687 * 8 7 6 38 38 H 0.96998 * 119.99836 * 354.69062 * 11 9 7 39 39 H 1.07997 * 119.96194 * 0.02562 * 13 12 11 40 40 H 1.08003 * 119.93470 * 179.97438 * 14 13 12 41 41 H 1.07999 * 119.97010 * 180.29424 * 15 14 13 42 42 H 0.97001 * 120.00174 * 179.97438 * 21 20 18 43 43 H 1.07992 * 120.07104 * 359.97438 * 26 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 8 2.0064 -0.6737 1.1668 5 6 2.0400 -0.7212 -1.2493 6 6 3.5649 -0.6132 -1.3137 7 7 4.0533 -1.3043 -2.5096 8 6 4.4017 -2.7257 -2.4433 9 6 4.1820 -0.6323 -3.6708 10 8 3.8932 0.5474 -3.7258 11 7 4.6318 -1.2680 -4.7709 12 6 4.6605 -0.6019 -6.0013 13 6 3.6826 0.3368 -6.3070 14 6 3.7100 0.9944 -7.5217 15 6 4.7127 0.7258 -8.4335 16 6 5.6901 -0.2154 -8.1360 17 8 6.6721 -0.4825 -9.0345 18 6 7.6594 -1.3090 -8.6346 19 1 7.6922 -1.6562 -7.6124 20 6 8.6325 -1.7134 -9.5356 21 7 8.5928 -1.2902 -10.7807 22 14 10.0008 -2.8580 -8.9815 23 1 9.5797 -4.2675 -9.1845 24 1 11.2251 -2.5876 -9.7772 25 1 10.2853 -2.6289 -7.5421 26 6 5.6649 -0.8783 -6.9171 27 1 -0.3633 -1.0276 -0.0005 28 1 -0.3634 0.5138 0.8899 29 1 -0.3633 0.5139 -0.8900 30 1 1.7210 -1.5952 1.2328 31 1 1.6054 -0.2617 -2.1369 32 1 1.7517 -1.7715 -1.2057 33 1 3.9995 -1.0727 -0.4259 34 1 3.8532 0.4370 -1.3573 35 1 5.4533 -2.8299 -2.1760 36 1 3.7851 -3.2162 -1.6899 37 1 4.2259 -3.1886 -3.4142 38 1 4.9356 -2.1872 -4.7097 39 1 2.9003 0.5524 -5.5943 40 1 2.9486 1.7232 -7.7572 41 1 4.7342 1.2449 -9.3803 42 1 9.2738 -1.5728 -11.4110 43 1 6.4261 -1.6074 -6.6818 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000085563102.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:19:55 Heat of formation + Delta-G solvation = -100.976033 kcal Electronic energy + Delta-G solvation = -24967.219969 eV Core-core repulsion = 21205.577256 eV Total energy + Delta-G solvation = -3761.642713 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 308.157 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.84595 -40.54787 -38.99899 -38.21963 -36.63420 -35.73812 -34.22866 -33.10338 -31.09875 -30.46951 -29.71469 -27.62830 -27.25600 -25.10646 -23.50014 -23.08594 -22.35100 -21.06915 -19.82754 -19.53735 -18.78417 -17.54630 -17.40042 -16.96999 -16.76585 -16.49799 -16.40329 -15.97416 -15.71127 -15.54510 -15.31930 -14.65737 -14.58831 -14.35997 -14.12544 -14.10565 -13.74537 -13.55812 -13.36057 -13.16582 -12.84072 -12.74509 -12.72526 -12.64818 -12.40333 -12.10928 -11.90314 -11.71042 -11.52480 -11.30546 -11.15071 -11.00059 -10.71816 -9.76765 -9.31263 -8.83349 -8.45684 -6.14411 0.44772 0.71030 1.36222 1.45058 1.49223 1.53866 2.00930 2.18612 2.81057 2.85456 3.18360 3.50008 3.50645 3.83025 3.99947 4.04672 4.12259 4.24651 4.33279 4.35160 4.45535 4.48173 4.59549 4.61853 4.66228 4.71546 4.78508 4.85037 4.92175 5.02307 5.11441 5.12839 5.21192 5.28084 5.32882 5.47847 5.55687 5.67841 5.68635 5.86075 6.02490 6.20395 6.77866 6.90881 6.98614 7.39528 7.78329 8.77350 Molecular weight = 308.16amu Principal moments of inertia in cm(-1) A = 0.022122 B = 0.002814 C = 0.002541 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1265.400793 B = 9948.751804 C =11017.139492 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.110 3.890 3 H 0.087 0.913 4 O -0.575 6.575 5 C -0.155 4.155 6 C 0.135 3.865 7 N -0.624 5.624 8 C 0.067 3.933 9 C 0.698 3.302 10 O -0.609 6.609 11 N -0.675 5.675 12 C 0.205 3.795 13 C -0.199 4.199 14 C -0.050 4.050 15 C -0.215 4.215 16 C 0.136 3.864 17 O -0.226 6.226 18 C -0.413 4.413 19 H 0.101 0.899 20 C -0.022 4.022 21 N -0.919 5.919 22 Si 1.018 2.982 23 H -0.260 1.260 24 H -0.273 1.273 25 H -0.254 1.254 26 C -0.261 4.261 27 H 0.071 0.929 28 H 0.064 0.936 29 H 0.062 0.938 30 H 0.389 0.611 31 H 0.055 0.945 32 H 0.086 0.914 33 H 0.105 0.895 34 H 0.058 0.942 35 H 0.068 0.932 36 H 0.105 0.895 37 H 0.073 0.927 38 H 0.417 0.583 39 H 0.128 0.872 40 H 0.154 0.846 41 H 0.120 0.880 42 H 0.273 0.727 43 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.242 -5.964 22.610 26.873 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C 0.050 3.950 3 H 0.105 0.895 4 O -0.383 6.383 5 C -0.194 4.194 6 C 0.013 3.987 7 N -0.360 5.360 8 C -0.075 4.075 9 C 0.400 3.600 10 O -0.488 6.488 11 N -0.324 5.324 12 C 0.109 3.891 13 C -0.220 4.220 14 C -0.069 4.069 15 C -0.235 4.235 16 C 0.084 3.916 17 O -0.132 6.132 18 C -0.489 4.489 19 H 0.118 0.882 20 C -0.220 4.220 21 N -0.557 5.557 22 Si 0.838 3.162 23 H -0.185 1.185 24 H -0.198 1.198 25 H -0.177 1.177 26 C -0.283 4.283 27 H 0.090 0.910 28 H 0.083 0.917 29 H 0.081 0.919 30 H 0.239 0.761 31 H 0.074 0.926 32 H 0.105 0.895 33 H 0.123 0.877 34 H 0.076 0.924 35 H 0.087 0.913 36 H 0.124 0.876 37 H 0.091 0.909 38 H 0.256 0.744 39 H 0.146 0.854 40 H 0.171 0.829 41 H 0.138 0.862 42 H 0.082 0.918 43 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -13.041 -4.542 22.365 26.285 hybrid contribution 0.631 -1.193 -0.507 1.442 sum -12.410 -5.735 21.858 25.781 Atomic orbital electron populations 1.22437 0.95318 1.03337 1.02705 1.21739 0.93564 0.96202 0.83502 0.89531 1.86574 1.77422 1.30468 1.43873 1.22585 0.95694 1.02379 0.98778 1.21407 0.94215 0.97623 0.85490 1.47166 1.68719 1.11943 1.08215 1.22075 1.02344 0.78775 1.04297 1.16072 0.78471 0.84595 0.80901 1.90904 1.57771 1.15572 1.84542 1.42629 1.67345 1.16968 1.05499 1.17217 0.93177 0.94472 0.84188 1.20836 1.00749 1.02117 0.98287 1.20905 0.96550 0.97745 0.91688 1.20470 0.97813 1.02672 1.02559 1.19580 0.89102 0.93631 0.89238 1.83987 1.30722 1.60547 1.37923 1.21777 1.02907 1.26325 0.97851 0.88164 1.26586 1.01086 0.99530 0.94775 1.70186 1.36025 1.44653 1.04866 0.84591 0.75529 0.77271 0.78843 1.18485 1.19831 1.17748 1.20785 1.02171 1.08898 0.96483 0.91015 0.91728 0.91870 0.76092 0.92604 0.89537 0.87678 0.92367 0.91342 0.87645 0.90864 0.74384 0.85418 0.82859 0.86197 0.91830 0.85387 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.91 9.53 71.98 0.69 -1.22 16 2 C 0.11 1.42 3.59 30.59 0.11 1.53 16 3 H 0.09 1.38 8.14 -2.38 -0.02 1.36 16 4 O -0.58 -7.03 12.88 -148.98 -1.92 -8.95 16 5 C -0.16 -2.22 5.22 30.60 0.16 -2.06 16 6 C 0.14 2.39 5.30 86.38 0.46 2.85 16 7 N -0.62 -12.61 2.87 -864.91 -2.49 -15.09 16 8 C 0.07 0.77 10.16 127.77 1.30 2.07 16 9 C 0.70 20.92 8.01 179.05 1.43 22.36 16 10 O -0.61 -23.06 13.63 -3.98 -0.05 -23.11 16 11 N -0.67 -20.31 5.17 -317.22 -1.64 -21.96 16 12 C 0.20 7.87 6.27 38.13 0.24 8.11 16 13 C -0.20 -7.55 8.65 22.42 0.19 -7.36 16 14 C -0.05 -1.87 10.03 22.23 0.22 -1.65 16 15 C -0.22 -9.49 9.99 22.41 0.22 -9.27 16 16 C 0.14 6.86 6.64 22.56 0.15 7.01 16 17 O -0.23 -13.53 9.76 -22.80 -0.22 -13.76 16 18 C -0.41 -23.74 9.44 67.92 0.64 -23.10 16 19 H 0.10 5.27 5.30 -2.91 -0.02 5.25 16 20 C -0.02 -1.24 5.49 84.83 0.47 -0.78 16 21 N -0.92 -56.02 13.67 21.61 0.30 -55.72 16 22 Si 1.02 42.05 29.55 68.60 2.03 44.07 16 23 H -0.26 -10.06 7.11 99.48 0.71 -9.35 16 24 H -0.27 -10.97 7.11 99.48 0.71 -10.26 16 25 H -0.25 -9.73 7.11 99.48 0.71 -9.02 16 26 C -0.26 -11.58 9.04 22.51 0.20 -11.38 16 27 H 0.07 0.56 8.14 -2.39 -0.02 0.54 16 28 H 0.06 0.69 8.14 -2.39 -0.02 0.67 16 29 H 0.06 0.73 8.14 -2.39 -0.02 0.72 16 30 H 0.39 1.64 9.04 -74.06 -0.67 0.97 16 31 H 0.06 1.09 8.14 -2.39 -0.02 1.07 16 32 H 0.09 0.87 8.14 -2.39 -0.02 0.85 16 33 H 0.11 1.39 7.75 -2.39 -0.02 1.37 16 34 H 0.06 1.37 7.42 -2.39 -0.02 1.35 16 35 H 0.07 0.70 8.14 -2.39 -0.02 0.69 16 36 H 0.11 0.61 8.07 -2.38 -0.02 0.59 16 37 H 0.07 0.80 6.45 -2.39 -0.02 0.78 16 38 H 0.42 9.77 6.63 -92.71 -0.61 9.16 16 39 H 0.13 4.71 6.43 -2.91 -0.02 4.70 16 40 H 0.15 4.47 8.06 -2.91 -0.02 4.45 16 41 H 0.12 5.12 8.06 -2.91 -0.02 5.09 16 42 H 0.27 15.21 8.31 -92.71 -0.77 14.44 16 43 H 0.13 5.57 5.71 -2.91 -0.02 5.55 16 Total: -1.00 -78.70 360.46 2.25 -76.45 By element: Atomic # 1 Polarization: 31.19 SS G_CDS: -0.24 Total: 30.95 kcal Atomic # 6 Polarization: -19.36 SS G_CDS: 6.49 Total: -12.88 kcal Atomic # 7 Polarization: -88.94 SS G_CDS: -3.83 Total: -92.77 kcal Atomic # 8 Polarization: -43.63 SS G_CDS: -2.19 Total: -45.82 kcal Atomic # 14 Polarization: 42.05 SS G_CDS: 2.03 Total: 44.07 kcal Total: -78.70 2.25 -76.45 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000085563102.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.530 kcal (2) G-P(sol) polarization free energy of solvation -78.696 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.226 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.250 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.446 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.976 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds