Wall clock time and date at job start Tue Mar 31 2020 10:30:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 O 1.42898 * 109.46826 * 2 1 4 4 C 1.36068 * 117.00101 * 180.02562 * 3 2 1 5 5 C 1.38517 * 120.02257 * 0.25432 * 4 3 2 6 6 C 1.38232 * 120.06397 * 180.25380 * 5 4 3 7 7 C 1.38715 * 120.12100 * 359.49185 * 6 5 4 8 8 O 1.35984 * 119.97560 * 180.27721 * 7 6 5 9 9 C 1.42901 * 116.99713 * 359.97438 * 8 7 6 10 10 C 1.38629 * 120.05182 * 0.25104 * 7 6 5 11 11 C 1.38683 * 119.93002 * 0.02562 * 10 7 6 12 12 N 1.40154 * 120.05865 * 180.02562 * 11 10 7 13 13 C 1.34780 * 120.00004 * 325.32313 * 12 11 10 14 14 O 1.21597 * 119.99433 * 4.44909 * 13 12 11 15 15 N 1.34777 * 120.00230 * 184.44078 * 13 12 11 16 16 C 1.46498 * 119.99841 * 0.02562 * 15 13 12 17 17 C 1.46497 * 119.99922 * 180.02562 * 15 13 12 18 18 C 1.50702 * 109.47030 * 90.00078 * 17 15 13 19 19 H 1.08000 * 119.99670 * 0.02562 * 18 17 15 20 20 C 1.37877 * 120.00135 * 179.97438 * 18 17 15 21 21 N 1.31517 * 119.99766 * 0.02562 * 20 18 17 22 22 Si 1.86797 * 120.00014 * 180.02562 * 20 18 17 23 23 H 1.48499 * 109.47489 * 89.99829 * 22 20 18 24 24 H 1.48498 * 109.46999 * 210.00224 * 22 20 18 25 25 H 1.48506 * 109.47189 * 329.99806 * 22 20 18 26 26 H 1.08995 * 109.47325 * 59.99971 * 1 2 3 27 27 H 1.09002 * 109.46770 * 180.02562 * 1 2 3 28 28 H 1.09008 * 109.46787 * 299.99960 * 1 2 3 29 29 H 1.09002 * 109.46562 * 240.00432 * 2 1 3 30 30 H 1.08995 * 109.47325 * 120.00029 * 2 1 3 31 31 H 1.07994 * 119.96597 * 0.02562 * 5 4 3 32 32 H 1.08007 * 119.93898 * 179.76697 * 6 5 4 33 33 H 1.08999 * 109.46960 * 60.00341 * 9 8 7 34 34 H 1.09004 * 109.47051 * 179.97438 * 9 8 7 35 35 H 1.08998 * 109.47705 * 300.00464 * 9 8 7 36 36 H 1.08000 * 120.03143 * 179.97438 * 10 7 6 37 37 H 0.97003 * 120.00612 * 145.33355 * 12 11 10 38 38 H 1.09003 * 109.47009 * 89.99975 * 16 15 13 39 39 H 1.08999 * 109.47100 * 209.99809 * 16 15 13 40 40 H 1.08992 * 109.47288 * 330.00145 * 16 15 13 41 41 H 1.08997 * 109.47350 * 210.00165 * 17 15 13 42 42 H 1.09000 * 109.47478 * 330.00376 * 17 15 13 43 43 H 0.96995 * 119.99287 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3552 1.5257 -0.0005 5 6 4.1995 0.4276 -0.0064 6 6 5.5700 0.6077 -0.0016 7 6 6.1038 1.8881 -0.0017 8 8 7.4525 2.0619 -0.0027 9 6 8.2586 0.8820 -0.0031 10 6 5.2634 2.9906 -0.0012 11 6 3.8881 2.8123 -0.0002 12 7 3.0359 3.9250 -0.0002 13 6 3.3887 5.0440 0.6630 14 8 4.4805 5.1177 1.1932 15 7 2.5315 6.0814 0.7383 16 6 1.2160 5.9923 0.0998 17 6 2.9153 7.2979 1.4587 18 6 3.5917 8.2521 0.5085 19 1 3.7221 7.9798 -0.5284 20 6 4.0429 9.4733 0.9626 21 7 3.8835 9.8050 2.2252 22 14 4.8806 10.6564 -0.2154 23 1 3.8624 11.5424 -0.8347 24 1 5.8670 11.4802 0.5286 25 1 5.5785 9.8870 -1.2767 26 1 -0.3634 0.5138 -0.8899 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5139 0.8901 29 1 1.8933 -0.5138 -0.8901 30 1 1.8934 -0.5138 0.8899 31 1 3.7866 -0.5703 -0.0109 32 1 6.2265 -0.2499 -0.0024 33 1 8.0387 0.2921 -0.8929 34 1 9.3122 1.1618 -0.0044 35 1 8.0400 0.2921 0.8870 36 1 5.6793 3.9873 -0.0008 37 1 2.1921 3.8898 -0.4774 38 1 0.4957 5.5817 0.8074 39 1 0.8946 6.9866 -0.2101 40 1 1.2790 5.3424 -0.7729 41 1 2.0253 7.7696 1.8752 42 1 3.6017 7.0411 2.2656 43 1 4.2013 10.6639 2.5447 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000085584766.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:30:40 Heat of formation + Delta-G solvation = -62.537231 kcal Electronic energy + Delta-G solvation = -25632.354834 eV Core-core repulsion = 21872.378952 eV Total energy + Delta-G solvation = -3759.975881 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 308.157 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.70858 -39.31225 -38.93651 -36.53223 -34.83523 -34.09128 -32.49525 -31.83715 -30.21710 -28.66016 -27.51071 -27.03482 -25.70230 -24.27034 -23.17337 -21.75168 -21.55102 -19.37931 -18.63132 -17.79059 -17.27904 -16.52960 -16.29019 -16.10778 -15.94239 -15.60705 -14.89570 -14.67283 -14.59414 -13.98860 -13.70346 -13.55832 -13.39152 -12.98047 -12.83900 -12.63048 -12.49696 -12.31054 -12.18358 -12.12057 -11.83037 -11.55002 -11.30122 -11.16044 -10.90864 -10.86585 -10.52225 -10.44471 -10.10624 -9.94467 -9.58901 -9.16464 -8.38769 -8.19781 -7.66920 -7.38150 -5.99287 -4.03791 1.37431 1.55702 3.09480 3.14059 3.34147 3.40914 3.45783 3.52980 3.69883 4.08925 4.45754 4.60480 4.68037 4.72389 4.86019 4.97023 5.02681 5.05634 5.10968 5.19994 5.34731 5.37561 5.42428 5.54532 5.57584 5.59231 5.80787 5.90109 5.95650 6.00890 6.18572 6.21032 6.48727 6.51408 6.83725 7.02362 7.37372 7.40505 7.56498 7.60351 7.73237 7.99047 8.28227 8.64090 8.97140 9.30175 9.61547 11.08606 Molecular weight = 308.16amu Principal moments of inertia in cm(-1) A = 0.012816 B = 0.004047 C = 0.003204 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2184.223207 B = 6917.503868 C = 8737.634374 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.058 3.942 3 O -0.316 6.316 4 C 0.059 3.941 5 C -0.153 4.153 6 C -0.198 4.198 7 C 0.113 3.887 8 O -0.313 6.313 9 C 0.030 3.970 10 C -0.119 4.119 11 C 0.195 3.805 12 N -0.686 5.686 13 C 0.697 3.303 14 O -0.567 6.567 15 N -0.611 5.611 16 C 0.085 3.915 17 C 0.259 3.741 18 C -0.526 4.526 19 H 0.057 0.943 20 C 0.061 3.939 21 N -0.895 5.895 22 Si 0.898 3.102 23 H -0.281 1.281 24 H -0.285 1.285 25 H -0.274 1.274 26 H 0.066 0.934 27 H 0.075 0.925 28 H 0.066 0.934 29 H 0.058 0.942 30 H 0.058 0.942 31 H 0.129 0.871 32 H 0.127 0.873 33 H 0.052 0.948 34 H 0.097 0.903 35 H 0.052 0.948 36 H 0.162 0.838 37 H 0.406 0.594 38 H 0.045 0.955 39 H 0.078 0.922 40 H 0.050 0.950 41 H 0.034 0.966 42 H 0.046 0.954 43 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.479 -22.884 -6.292 23.986 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.018 4.018 3 O -0.231 6.231 4 C 0.012 3.988 5 C -0.173 4.173 6 C -0.218 4.218 7 C 0.068 3.932 8 O -0.226 6.226 9 C -0.066 4.066 10 C -0.141 4.141 11 C 0.097 3.903 12 N -0.336 5.336 13 C 0.399 3.601 14 O -0.443 6.443 15 N -0.346 5.346 16 C -0.060 4.060 17 C 0.140 3.860 18 C -0.565 4.565 19 H 0.076 0.924 20 C -0.141 4.141 21 N -0.534 5.534 22 Si 0.726 3.274 23 H -0.207 1.207 24 H -0.211 1.211 25 H -0.199 1.199 26 H 0.085 0.915 27 H 0.094 0.906 28 H 0.085 0.915 29 H 0.076 0.924 30 H 0.077 0.923 31 H 0.147 0.853 32 H 0.145 0.855 33 H 0.070 0.930 34 H 0.115 0.885 35 H 0.071 0.929 36 H 0.179 0.821 37 H 0.244 0.756 38 H 0.064 0.936 39 H 0.097 0.903 40 H 0.068 0.932 41 H 0.052 0.948 42 H 0.064 0.936 43 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -2.760 -22.217 -5.717 23.106 hybrid contribution 0.076 0.114 -0.846 0.857 sum -2.685 -22.103 -6.564 23.212 Atomic orbital electron populations 1.21767 0.92920 1.02600 1.03615 1.22695 0.95676 0.82385 1.01022 1.86040 1.18531 1.28712 1.89822 1.18563 0.82662 0.92405 1.05162 1.20668 0.93180 0.97279 1.06142 1.20880 0.95391 0.95840 1.09648 1.18685 0.82853 0.92979 0.98731 1.86138 1.14352 1.33078 1.89061 1.22999 0.95129 0.87533 1.00925 1.20519 0.89924 0.99944 1.03666 1.16470 0.89018 0.83512 1.01292 1.42789 1.23344 1.12336 1.55159 1.15927 0.84744 0.79708 0.79693 1.90896 1.20976 1.81033 1.51396 1.47477 1.14591 1.16210 1.56370 1.21584 0.85379 1.02844 0.96155 1.19255 0.96248 0.78371 0.92103 1.21468 1.38313 1.00581 0.96131 0.92440 1.24924 0.95879 0.98028 0.95247 1.69936 1.47004 1.22447 1.14052 0.86496 0.79332 0.80692 0.80893 1.20713 1.21105 1.19880 0.91530 0.90630 0.91456 0.92383 0.92327 0.85279 0.85529 0.92989 0.88481 0.92906 0.82080 0.75639 0.93615 0.90311 0.93166 0.94760 0.93612 0.92747 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.06 10.28 37.16 0.38 -0.68 16 2 C 0.06 0.51 5.46 37.16 0.20 0.71 16 3 O -0.32 -4.06 9.69 -19.96 -0.19 -4.26 16 4 C 0.06 0.86 6.70 -39.10 -0.26 0.59 16 5 C -0.15 -1.87 9.03 -39.48 -0.36 -2.23 16 6 C -0.20 -2.50 9.03 -39.41 -0.36 -2.86 16 7 C 0.11 1.78 6.68 -39.26 -0.26 1.52 16 8 O -0.31 -4.73 10.50 -19.69 -0.21 -4.94 16 9 C 0.03 0.28 9.81 101.05 0.99 1.27 16 10 C -0.12 -2.21 8.64 -39.27 -0.34 -2.55 16 11 C 0.19 3.39 6.32 -83.51 -0.53 2.86 16 12 N -0.69 -12.36 5.07 -14.12 -0.07 -12.43 16 13 C 0.70 15.70 8.13 -86.91 -0.71 14.99 16 14 O -0.57 -15.02 13.34 5.28 0.07 -14.95 16 15 N -0.61 -13.54 2.86 -188.74 -0.54 -14.08 16 16 C 0.08 1.39 10.24 59.85 0.61 2.00 16 17 C 0.26 6.94 5.16 -5.19 -0.03 6.92 16 18 C -0.53 -15.17 9.39 -34.44 -0.32 -15.50 16 19 H 0.06 1.66 7.81 -52.49 -0.41 1.25 16 20 C 0.06 1.77 5.46 -17.82 -0.10 1.67 16 21 N -0.90 -26.94 13.29 55.43 0.74 -26.20 16 22 Si 0.90 22.23 29.54 -169.99 -5.02 17.21 16 23 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 24 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 25 H -0.27 -6.79 7.11 56.52 0.40 -6.39 16 26 H 0.07 0.47 8.14 -51.93 -0.42 0.04 16 27 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 28 H 0.07 0.51 8.14 -51.92 -0.42 0.09 16 29 H 0.06 0.43 7.65 -51.93 -0.40 0.03 16 30 H 0.06 0.47 7.67 -51.93 -0.40 0.07 16 31 H 0.13 1.17 6.29 -52.49 -0.33 0.84 16 32 H 0.13 1.21 6.28 -52.48 -0.33 0.88 16 33 H 0.05 0.41 7.66 -51.93 -0.40 0.01 16 34 H 0.10 0.74 8.14 -51.93 -0.42 0.32 16 35 H 0.05 0.44 7.66 -51.93 -0.40 0.04 16 36 H 0.16 3.50 6.19 -52.49 -0.32 3.18 16 37 H 0.41 6.16 6.26 -40.82 -0.26 5.91 16 38 H 0.05 0.66 8.14 -51.93 -0.42 0.23 16 39 H 0.08 1.30 8.07 -51.93 -0.42 0.88 16 40 H 0.05 0.68 6.30 -51.93 -0.33 0.35 16 41 H 0.03 0.92 8.07 -51.93 -0.42 0.50 16 42 H 0.05 1.38 7.42 -51.93 -0.39 0.99 16 43 H 0.26 7.46 8.31 -40.82 -0.34 7.13 16 LS Contribution 358.28 15.07 5.40 5.40 Total: -1.00 -35.19 358.28 -6.93 -42.12 By element: Atomic # 1 Polarization: 9.43 SS G_CDS: -6.04 Total: 3.39 kcal Atomic # 6 Polarization: 9.80 SS G_CDS: -1.07 Total: 8.73 kcal Atomic # 7 Polarization: -52.84 SS G_CDS: 0.13 Total: -52.71 kcal Atomic # 8 Polarization: -23.81 SS G_CDS: -0.33 Total: -24.14 kcal Atomic # 14 Polarization: 22.23 SS G_CDS: -5.02 Total: 17.21 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -35.19 -6.93 -42.12 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000085584766.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.415 kcal (2) G-P(sol) polarization free energy of solvation -35.188 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.603 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.934 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.122 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.537 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds