Wall clock time and date at job start Tue Mar 31 2020 09:26:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.36072 * 116.99824 * 2 1 4 4 C 1.38548 * 120.00607 * 359.97438 * 3 2 1 5 5 C 1.38190 * 120.06554 * 179.97438 * 4 3 2 6 6 C 1.38834 * 120.07729 * 0.02563 * 5 4 3 7 7 N 1.40141 * 119.99591 * 179.97438 * 6 5 4 8 8 C 1.34777 * 120.00063 * 35.09443 * 7 6 5 9 9 O 1.21590 * 120.00025 * 355.41746 * 8 7 6 10 10 N 1.34771 * 119.99692 * 175.41911 * 8 7 6 11 11 C 1.46494 * 120.00390 * 359.97438 * 10 8 7 12 12 C 1.46505 * 119.99833 * 180.02562 * 10 8 7 13 13 H 1.09000 * 109.47002 * 359.97438 * 12 10 8 14 14 C 1.53003 * 109.47105 * 239.99895 * 12 10 8 15 15 C 1.50698 * 109.47495 * 119.99957 * 12 10 8 16 16 H 1.07998 * 119.99607 * 359.97438 * 15 12 10 17 17 C 1.37873 * 120.00269 * 180.02562 * 15 12 10 18 18 N 1.31512 * 119.99904 * 359.97438 * 17 15 12 19 19 Si 1.86796 * 119.99939 * 180.02562 * 17 15 12 20 20 H 1.48501 * 109.47682 * 59.99540 * 19 17 15 21 21 H 1.48505 * 109.47410 * 179.97438 * 19 17 15 22 22 H 1.48502 * 109.47291 * 299.99573 * 19 17 15 23 23 C 1.38795 * 120.00577 * 0.25089 * 6 5 4 24 24 C 1.38506 * 119.93624 * 359.47101 * 23 6 5 25 25 O 1.35989 * 120.04266 * 180.27498 * 24 23 6 26 26 C 1.42899 * 117.00027 * 0.25796 * 25 24 23 27 27 H 1.08999 * 109.47515 * 300.00306 * 1 2 3 28 28 H 1.09004 * 109.46991 * 60.00140 * 1 2 3 29 29 H 1.09004 * 109.47356 * 180.02562 * 1 2 3 30 30 H 1.08002 * 119.96206 * 0.02562 * 4 3 2 31 31 H 1.08000 * 119.95711 * 179.97438 * 5 4 3 32 32 H 0.97000 * 119.99416 * 215.09726 * 7 6 5 33 33 H 1.08992 * 109.47239 * 270.00098 * 11 10 8 34 34 H 1.09005 * 109.47105 * 30.00304 * 11 10 8 35 35 H 1.09003 * 109.47429 * 150.00048 * 11 10 8 36 36 H 1.08991 * 109.47019 * 300.00233 * 14 12 10 37 37 H 1.09004 * 109.46857 * 60.00148 * 14 12 10 38 38 H 1.08999 * 109.47257 * 179.97438 * 14 12 10 39 39 H 0.96999 * 119.99783 * 179.97438 * 18 17 15 40 40 H 1.08001 * 120.03276 * 179.73097 * 23 6 5 41 41 H 1.09002 * 109.46953 * 300.00140 * 26 25 24 42 42 H 1.09004 * 109.47121 * 59.99533 * 26 25 24 43 43 H 1.08995 * 109.47593 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0467 1.2124 0.0000 4 6 1.2922 2.3744 -0.0005 5 6 1.9183 3.6064 0.0000 6 6 3.3045 3.6824 0.0005 7 7 3.9376 4.9327 0.0005 8 6 3.3898 5.9654 0.6712 9 8 2.3057 5.8363 1.2064 10 7 4.0437 7.1414 0.7485 11 6 5.3501 7.2969 0.1041 12 6 3.4485 8.2639 1.4779 13 1 2.4839 7.9616 1.8857 14 6 3.2513 9.4444 0.5247 15 6 4.3637 8.6740 2.6027 16 1 5.2954 8.1505 2.7589 17 6 4.0113 9.7167 3.4330 18 7 2.8765 10.3537 3.2431 19 14 5.1461 10.2254 4.8268 20 1 6.4596 10.6382 4.2702 21 1 4.5428 11.3631 5.5663 22 1 5.3386 9.0797 5.7517 23 6 4.0634 2.5203 -0.0047 24 6 3.4364 1.2853 0.0006 25 8 4.1778 0.1453 0.0011 26 6 5.5989 0.2957 0.0017 27 1 -0.3634 0.5139 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3634 -1.0277 0.0005 30 1 0.2137 2.3173 -0.0005 31 1 1.3284 4.5111 -0.0008 32 1 4.7701 5.0546 -0.4822 33 1 6.1367 7.0215 0.8065 34 1 5.4024 6.6503 -0.7719 35 1 5.4832 8.3346 -0.2018 36 1 4.2156 9.7467 0.1165 37 1 2.5892 9.1477 -0.2888 38 1 2.8081 10.2794 1.0673 39 1 2.6284 11.0871 3.8275 40 1 5.1418 2.5789 -0.0087 41 1 5.9065 0.8448 -0.8882 42 1 5.9057 0.8451 0.8917 43 1 6.0684 -0.6880 0.0025 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000086280327.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:26:45 Heat of formation + Delta-G solvation = -56.454829 kcal Electronic energy + Delta-G solvation = -25591.011118 eV Core-core repulsion = 21831.298990 eV Total energy + Delta-G solvation = -3759.712129 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 308.157 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.71411 -39.65355 -38.41730 -37.06311 -35.32224 -34.01885 -32.68614 -30.27230 -29.83627 -28.79045 -27.30285 -26.81545 -26.12155 -25.21973 -22.86276 -22.14072 -21.00148 -19.25454 -18.59603 -17.76335 -17.35793 -16.55102 -16.23792 -16.06285 -15.69326 -15.26962 -15.06512 -14.86518 -14.57423 -14.49589 -14.20767 -13.28550 -13.23900 -12.82959 -12.66121 -12.63626 -12.49716 -12.20046 -11.63392 -11.58998 -11.47329 -11.34526 -11.22671 -11.07620 -11.02454 -10.84056 -10.71922 -10.28283 -10.17511 -9.62759 -9.28730 -9.16385 -8.52219 -8.44081 -7.71930 -7.30483 -6.08663 -4.16569 1.32860 1.55829 3.08044 3.25887 3.27078 3.32360 3.32796 3.36588 3.62287 4.00849 4.33906 4.49923 4.80057 4.95093 5.00502 5.06470 5.12358 5.22420 5.24373 5.32561 5.38630 5.40004 5.45323 5.50432 5.58507 5.84849 5.95322 6.18009 6.41603 6.42947 6.57540 6.71638 6.77991 6.96850 7.03104 7.07290 7.13698 7.43675 7.60854 7.67315 7.79953 8.03924 8.19216 8.60230 8.84090 9.17732 9.50390 10.96694 Molecular weight = 308.16amu Principal moments of inertia in cm(-1) A = 0.020108 B = 0.003160 C = 0.003026 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1392.152161 B = 8858.200281 C = 9252.030272 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.311 6.311 3 C 0.071 3.929 4 C -0.151 4.151 5 C -0.116 4.116 6 C 0.184 3.816 7 N -0.694 5.694 8 C 0.697 3.303 9 O -0.578 6.578 10 N -0.604 5.604 11 C 0.087 3.913 12 C 0.273 3.727 13 H 0.066 0.934 14 C -0.148 4.148 15 C -0.527 4.527 16 H 0.058 0.942 17 C 0.065 3.935 18 N -0.888 5.888 19 Si 0.899 3.101 20 H -0.277 1.277 21 H -0.286 1.286 22 H -0.277 1.277 23 C -0.207 4.207 24 C 0.115 3.885 25 O -0.307 6.307 26 C 0.027 3.973 27 H 0.054 0.946 28 H 0.053 0.947 29 H 0.096 0.904 30 H 0.136 0.864 31 H 0.149 0.851 32 H 0.402 0.598 33 H 0.049 0.951 34 H 0.044 0.956 35 H 0.078 0.922 36 H 0.030 0.970 37 H 0.012 0.988 38 H 0.095 0.905 39 H 0.264 0.736 40 H 0.135 0.865 41 H 0.053 0.947 42 H 0.055 0.945 43 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.487 -16.429 -10.096 19.443 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.225 6.225 3 C 0.026 3.974 4 C -0.170 4.170 5 C -0.137 4.137 6 C 0.087 3.913 7 N -0.344 5.344 8 C 0.399 3.601 9 O -0.455 6.455 10 N -0.338 5.338 11 C -0.057 4.057 12 C 0.173 3.827 13 H 0.083 0.917 14 C -0.206 4.206 15 C -0.566 4.566 16 H 0.076 0.924 17 C -0.137 4.137 18 N -0.526 5.526 19 Si 0.727 3.273 20 H -0.203 1.203 21 H -0.211 1.211 22 H -0.203 1.203 23 C -0.229 4.229 24 C 0.069 3.931 25 O -0.221 6.221 26 C -0.069 4.069 27 H 0.073 0.927 28 H 0.071 0.929 29 H 0.114 0.886 30 H 0.154 0.846 31 H 0.167 0.833 32 H 0.238 0.762 33 H 0.068 0.932 34 H 0.063 0.937 35 H 0.097 0.903 36 H 0.049 0.951 37 H 0.031 0.969 38 H 0.113 0.887 39 H 0.074 0.926 40 H 0.153 0.847 41 H 0.072 0.928 42 H 0.073 0.927 43 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 1.639 -16.604 -9.581 19.240 hybrid contribution 1.223 0.790 0.588 1.571 sum 2.863 -15.814 -8.993 18.416 Atomic orbital electron populations 1.23015 0.78997 1.03515 1.01272 1.86133 1.20640 1.26042 1.89689 1.18145 0.88961 0.85127 1.05214 1.20968 0.99882 0.90938 1.05219 1.21165 0.93298 0.98343 1.00854 1.17166 0.91461 0.83663 0.98967 1.42940 1.28098 1.08483 1.54883 1.15967 0.84359 0.80371 0.79398 1.90861 1.20948 1.81988 1.51740 1.47610 1.19459 1.11643 1.55101 1.21503 0.86000 1.02710 0.95485 1.18900 0.95423 0.79879 0.88538 0.91665 1.22122 0.98599 1.02140 0.97787 1.21291 1.05871 1.16309 1.13105 0.92368 1.24877 0.95320 0.96028 0.97502 1.69864 1.21720 1.22480 1.38544 0.86545 0.80618 0.78095 0.82051 1.20263 1.21146 1.20255 1.20672 0.99979 0.90147 1.12089 1.17807 0.88029 0.85310 1.01933 1.86155 1.18474 1.28175 1.89256 1.23037 0.78969 1.03572 1.01298 0.92749 0.92871 0.88586 0.84642 0.83344 0.76161 0.93226 0.93709 0.90349 0.95113 0.96903 0.88667 0.92595 0.84712 0.92820 0.92684 0.88442 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.25 9.81 101.05 0.99 1.24 16 2 O -0.31 -4.22 10.28 -34.57 -0.36 -4.58 16 3 C 0.07 1.04 6.70 -39.13 -0.26 0.77 16 4 C -0.15 -2.14 9.03 -39.48 -0.36 -2.49 16 5 C -0.12 -1.91 8.69 -39.38 -0.34 -2.25 16 6 C 0.18 2.92 6.30 -83.63 -0.53 2.40 16 7 N -0.69 -11.20 5.22 -14.20 -0.07 -11.27 16 8 C 0.70 14.58 8.13 -86.92 -0.71 13.87 16 9 O -0.58 -14.22 13.10 5.29 0.07 -14.15 16 10 N -0.60 -12.68 2.75 -181.01 -0.50 -13.18 16 11 C 0.09 1.40 9.48 59.84 0.57 1.96 16 12 C 0.27 6.89 2.64 -69.08 -0.18 6.70 16 13 H 0.07 1.92 6.90 -51.93 -0.36 1.56 16 14 C -0.15 -3.47 8.95 37.16 0.33 -3.14 16 15 C -0.53 -14.15 8.37 -34.44 -0.29 -14.44 16 16 H 0.06 1.54 7.64 -52.49 -0.40 1.14 16 17 C 0.07 1.77 5.30 -17.82 -0.09 1.67 16 18 N -0.89 -24.93 11.32 55.43 0.63 -24.30 16 19 Si 0.90 20.96 29.54 -169.99 -5.02 15.94 16 20 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 21 H -0.29 -6.61 7.11 56.52 0.40 -6.21 16 22 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 23 C -0.21 -2.83 8.95 -39.28 -0.35 -3.18 16 24 C 0.12 1.65 6.70 -39.14 -0.26 1.39 16 25 O -0.31 -4.08 10.28 -34.31 -0.35 -4.43 16 26 C 0.03 0.23 9.81 101.05 0.99 1.22 16 27 H 0.05 0.47 7.66 -51.93 -0.40 0.07 16 28 H 0.05 0.42 7.66 -51.93 -0.40 0.02 16 29 H 0.10 0.65 8.14 -51.93 -0.42 0.23 16 30 H 0.14 1.58 6.29 -52.49 -0.33 1.25 16 31 H 0.15 2.73 6.22 -52.49 -0.33 2.41 16 32 H 0.40 5.11 6.52 -40.82 -0.27 4.84 16 33 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 34 H 0.04 0.54 6.30 -51.93 -0.33 0.21 16 35 H 0.08 1.27 6.43 -51.93 -0.33 0.93 16 36 H 0.03 0.66 6.66 -51.93 -0.35 0.31 16 37 H 0.01 0.27 8.14 -51.93 -0.42 -0.16 16 38 H 0.09 2.46 6.07 -51.93 -0.32 2.14 16 39 H 0.26 7.07 8.31 -40.82 -0.34 6.73 16 40 H 0.14 1.48 6.30 -52.49 -0.33 1.15 16 41 H 0.05 0.40 7.65 -51.93 -0.40 0.00 16 42 H 0.05 0.46 7.67 -51.93 -0.40 0.06 16 43 H 0.10 0.63 8.14 -51.93 -0.42 0.21 16 LS Contribution 349.51 15.07 5.27 5.27 Total: -1.00 -33.13 349.51 -6.58 -39.71 By element: Atomic # 1 Polarization: 11.01 SS G_CDS: -5.75 Total: 5.26 kcal Atomic # 6 Polarization: 6.23 SS G_CDS: -0.49 Total: 5.74 kcal Atomic # 7 Polarization: -48.81 SS G_CDS: 0.06 Total: -48.76 kcal Atomic # 8 Polarization: -22.52 SS G_CDS: -0.64 Total: -23.16 kcal Atomic # 14 Polarization: 20.96 SS G_CDS: -5.02 Total: 15.94 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -33.13 -6.58 -39.71 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000086280327.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.749 kcal (2) G-P(sol) polarization free energy of solvation -33.127 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.877 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.578 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.705 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.455 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds