Wall clock time and date at job start Tue Mar 31 2020 09:26:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.35901 * 117.00096 * 2 1 4 4 C 1.38653 * 119.99263 * 179.97438 * 3 2 1 5 5 C 1.38804 * 119.98027 * 179.97438 * 4 3 2 6 6 N 1.39938 * 120.00906 * 180.02562 * 5 4 3 7 7 C 1.34769 * 120.00420 * 35.10291 * 6 5 4 8 8 O 1.21584 * 119.99924 * 355.41770 * 7 6 5 9 9 N 1.34780 * 120.00165 * 175.42374 * 7 6 5 10 10 C 1.46495 * 120.00037 * 359.97438 * 9 7 6 11 11 C 1.46500 * 120.00074 * 179.97438 * 9 7 6 12 12 H 1.09002 * 109.46853 * 359.97438 * 11 9 7 13 13 C 1.52997 * 109.47299 * 119.99640 * 11 9 7 14 14 C 1.50695 * 109.47189 * 239.99996 * 11 9 7 15 15 H 1.07997 * 120.00090 * 359.97438 * 14 11 9 16 16 C 1.37882 * 119.99968 * 180.02562 * 14 11 9 17 17 N 1.31507 * 120.00295 * 359.97438 * 16 14 11 18 18 Si 1.86800 * 119.99725 * 179.97438 * 16 14 11 19 19 H 1.48500 * 109.46991 * 179.97438 * 18 16 14 20 20 H 1.48503 * 109.47096 * 299.99584 * 18 16 14 21 21 H 1.48502 * 109.47261 * 59.99599 * 18 16 14 22 22 C 1.38807 * 119.97419 * 0.27392 * 5 4 3 23 23 C 1.38646 * 119.98379 * 359.49542 * 22 5 4 24 24 O 1.35898 * 119.99035 * 180.23051 * 23 22 5 25 25 C 1.42902 * 116.99803 * 180.25656 * 24 23 22 26 26 C 1.38682 * 120.01619 * 0.48626 * 23 22 5 27 27 H 1.08998 * 109.47373 * 300.00516 * 1 2 3 28 28 H 1.09000 * 109.47000 * 60.00441 * 1 2 3 29 29 H 1.09001 * 109.47103 * 179.97438 * 1 2 3 30 30 H 1.07995 * 120.00337 * 359.97438 * 4 3 2 31 31 H 0.97002 * 119.99608 * 215.10457 * 6 5 4 32 32 H 1.09004 * 109.47512 * 270.00559 * 10 9 7 33 33 H 1.09007 * 109.47344 * 30.00270 * 10 9 7 34 34 H 1.09001 * 109.47399 * 150.00253 * 10 9 7 35 35 H 1.09003 * 109.47076 * 300.00257 * 13 11 9 36 36 H 1.09000 * 109.47144 * 59.99590 * 13 11 9 37 37 H 1.09000 * 109.47352 * 179.97438 * 13 11 9 38 38 H 0.96998 * 120.00230 * 180.02562 * 17 16 14 39 39 H 1.08006 * 120.00541 * 179.72652 * 22 5 4 40 40 H 1.09002 * 109.47221 * 179.97438 * 25 24 23 41 41 H 1.08998 * 109.47038 * 299.99767 * 25 24 23 42 42 H 1.09003 * 109.47291 * 59.99971 * 25 24 23 43 43 H 1.08001 * 119.98731 * 179.75035 * 26 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 3.4306 1.2832 0.0005 5 6 4.0605 2.5201 0.0000 6 7 5.4579 2.5939 0.0000 7 6 6.1813 1.6756 -0.6707 8 8 5.6250 0.7363 -1.2060 9 7 7.5212 1.7984 -0.7479 10 6 8.1914 2.9304 -0.1033 11 6 8.3075 0.7999 -1.4766 12 1 7.6413 0.0394 -1.8839 13 6 9.0640 1.4808 -2.6189 14 6 9.2924 0.1530 -0.5372 15 1 9.3293 0.4557 0.4989 16 6 10.1472 -0.8246 -1.0006 17 7 10.1027 -1.1929 -2.2623 18 14 11.3685 -1.6259 0.1637 19 1 12.1655 -2.6381 -0.5748 20 1 12.2759 -0.5898 0.7191 21 1 10.6347 -2.2871 1.2726 22 6 3.3038 3.6838 0.0047 23 6 1.9193 3.6099 -0.0007 24 8 1.1783 4.7491 -0.0009 25 6 -0.2428 4.5987 -0.0008 26 6 1.2904 2.3739 -0.0006 27 1 -0.3634 0.5139 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 4.0187 0.3775 0.0014 31 1 5.9060 3.3060 0.4828 32 1 8.2574 3.7615 -0.8055 33 1 7.6211 3.2395 0.7727 34 1 9.1943 2.6327 0.2026 35 1 8.3515 1.9487 -3.2984 36 1 9.7302 2.2411 -2.2112 37 1 9.6494 0.7380 -3.1607 38 1 10.7038 -1.8808 -2.5882 39 1 3.7934 4.6465 0.0087 40 1 -0.7123 5.5824 -0.0005 41 1 -0.5500 4.0493 -0.8908 42 1 -0.5500 4.0495 0.8892 43 1 0.2119 2.3169 -0.0007 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000086280343.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:26:48 Heat of formation + Delta-G solvation = -81.571885 kcal Electronic energy + Delta-G solvation = -25576.114827 eV Core-core repulsion = 21815.313541 eV Total energy + Delta-G solvation = -3760.801286 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 308.157 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.96142 -41.02267 -39.78204 -38.28628 -36.99196 -35.45454 -34.48649 -31.48328 -31.30072 -29.95941 -28.63468 -27.61040 -27.47309 -27.28298 -24.21778 -23.51780 -22.34542 -20.86323 -20.00613 -19.01748 -18.37304 -17.88102 -17.52795 -17.06827 -16.97741 -16.79831 -16.55723 -16.37599 -16.15839 -15.77583 -15.58534 -14.92278 -14.52391 -14.27873 -14.05538 -13.63984 -13.55073 -13.44322 -13.22352 -13.07240 -12.85247 -12.73603 -12.64148 -12.44834 -12.31148 -12.22758 -12.17225 -12.10296 -11.99203 -11.22541 -11.01429 -10.73877 -10.50418 -9.49089 -9.07897 -9.02928 -8.13014 -6.29668 0.21492 0.44148 1.42538 1.45321 1.51871 1.58258 2.10339 2.32172 2.37563 2.45007 2.75386 3.10317 3.15097 3.95100 3.96247 4.10348 4.26832 4.32893 4.35169 4.37257 4.43181 4.44304 4.49241 4.69374 4.71099 4.72438 4.78267 4.89966 4.95444 4.99035 5.07180 5.18805 5.25291 5.26021 5.47203 5.55281 5.66335 5.79453 5.97308 6.15506 6.19525 6.25425 6.52188 6.77517 7.04727 7.37005 7.59801 8.91292 Molecular weight = 308.16amu Principal moments of inertia in cm(-1) A = 0.021409 B = 0.003218 C = 0.002961 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1307.575982 B = 8699.024124 C = 9453.736029 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 O -0.338 6.338 3 C 0.175 3.825 4 C -0.223 4.223 5 C 0.237 3.763 6 N -0.672 5.672 7 C 0.691 3.309 8 O -0.622 6.622 9 N -0.609 5.609 10 C 0.078 3.922 11 C 0.278 3.722 12 H 0.009 0.991 13 C -0.131 4.131 14 C -0.540 4.540 15 H 0.063 0.937 16 C 0.015 3.985 17 N -0.918 5.918 18 Si 0.966 3.034 19 H -0.284 1.284 20 H -0.260 1.260 21 H -0.279 1.279 22 C -0.219 4.219 23 C 0.184 3.816 24 O -0.322 6.322 25 C 0.015 3.985 26 C -0.306 4.306 27 H 0.073 0.927 28 H 0.067 0.933 29 H 0.117 0.883 30 H 0.110 0.890 31 H 0.423 0.577 32 H 0.069 0.931 33 H 0.084 0.916 34 H 0.077 0.923 35 H 0.018 0.982 36 H 0.049 0.951 37 H 0.069 0.931 38 H 0.265 0.735 39 H 0.155 0.845 40 H 0.124 0.876 41 H 0.063 0.937 42 H 0.068 0.932 43 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.376 13.645 7.260 24.786 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 O -0.252 6.252 3 C 0.128 3.872 4 C -0.245 4.245 5 C 0.141 3.859 6 N -0.323 5.323 7 C 0.393 3.607 8 O -0.503 6.503 9 N -0.343 5.343 10 C -0.065 4.065 11 C 0.176 3.824 12 H 0.027 0.973 13 C -0.190 4.190 14 C -0.579 4.579 15 H 0.081 0.919 16 C -0.184 4.184 17 N -0.556 5.556 18 Si 0.791 3.209 19 H -0.209 1.209 20 H -0.185 1.185 21 H -0.204 1.204 22 C -0.240 4.240 23 C 0.137 3.863 24 O -0.235 6.235 25 C -0.079 4.079 26 C -0.326 4.326 27 H 0.092 0.908 28 H 0.086 0.914 29 H 0.135 0.865 30 H 0.128 0.872 31 H 0.264 0.736 32 H 0.087 0.913 33 H 0.102 0.898 34 H 0.096 0.904 35 H 0.037 0.963 36 H 0.068 0.932 37 H 0.088 0.912 38 H 0.074 0.926 39 H 0.172 0.828 40 H 0.142 0.858 41 H 0.082 0.918 42 H 0.086 0.914 43 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges -19.414 12.874 6.722 24.245 hybrid contribution 0.693 -0.744 0.391 1.089 sum -18.721 12.129 7.113 23.413 Atomic orbital electron populations 1.23418 0.75965 1.05742 1.02644 1.86113 1.24042 1.26854 1.88179 1.18505 0.90951 0.84732 0.93005 1.20365 0.92659 0.98292 1.13184 1.16843 0.81891 0.92332 0.94873 1.42559 1.03900 1.31940 1.53867 1.16153 0.82495 0.82366 0.79699 1.90866 1.70831 1.34820 1.53738 1.47480 1.03322 1.28171 1.55350 1.21847 0.99516 0.87737 0.97359 1.18477 0.88663 0.85266 0.89982 0.97288 1.21882 0.99190 0.99942 0.98009 1.21568 1.18710 1.21375 0.96219 0.91912 1.25732 0.99105 0.96838 0.96744 1.70016 1.39107 1.30952 1.15569 0.85499 0.78617 0.78349 0.78467 1.20949 1.18494 1.20447 1.19964 0.91171 0.97752 1.15143 1.18282 0.90366 0.85097 0.92547 1.86066 1.21108 1.28184 1.88103 1.23426 0.76267 1.05818 1.02415 1.21337 1.01586 0.90640 1.18998 0.90810 0.91412 0.86480 0.87162 0.73583 0.91293 0.89796 0.90444 0.96292 0.93194 0.91235 0.92606 0.82772 0.85756 0.91802 0.91362 0.81755 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.26 9.81 113.37 1.11 1.38 16 2 O -0.34 -10.02 10.49 -92.43 -0.97 -10.99 16 3 C 0.17 5.47 6.68 22.48 0.15 5.62 16 4 C -0.22 -8.53 8.63 22.50 0.19 -8.33 16 5 C 0.24 7.95 6.29 38.12 0.24 8.19 16 6 N -0.67 -22.56 5.21 -317.29 -1.65 -24.22 16 7 C 0.69 30.90 8.12 179.06 1.45 32.35 16 8 O -0.62 -34.06 13.10 -3.98 -0.05 -34.12 16 9 N -0.61 -26.61 2.75 -844.86 -2.33 -28.93 16 10 C 0.08 2.42 9.24 127.77 1.18 3.60 16 11 C 0.28 14.85 2.64 44.24 0.12 14.97 16 12 H 0.01 0.59 6.90 -2.39 -0.02 0.57 16 13 C -0.13 -6.47 8.97 71.98 0.65 -5.82 16 14 C -0.54 -29.73 7.99 25.60 0.20 -29.52 16 15 H 0.06 3.32 7.33 -2.91 -0.02 3.30 16 16 C 0.02 0.86 5.30 84.66 0.45 1.31 16 17 N -0.92 -53.64 11.32 21.45 0.24 -53.40 16 18 Si 0.97 43.48 29.54 68.60 2.03 45.51 16 19 H -0.28 -12.59 7.11 99.48 0.71 -11.89 16 20 H -0.26 -10.97 7.11 99.48 0.71 -10.26 16 21 H -0.28 -12.56 7.11 99.48 0.71 -11.86 16 22 C -0.22 -5.84 9.90 22.50 0.22 -5.62 16 23 C 0.18 4.46 6.68 22.47 0.15 4.61 16 24 O -0.32 -6.32 10.49 -92.40 -0.97 -7.29 16 25 C 0.01 0.15 9.81 113.37 1.11 1.27 16 26 C -0.31 -7.23 8.02 22.48 0.18 -7.05 16 27 H 0.07 0.89 7.66 -2.39 -0.02 0.87 16 28 H 0.07 0.91 7.66 -2.39 -0.02 0.89 16 29 H 0.12 1.45 8.14 -2.39 -0.02 1.43 16 30 H 0.11 5.17 6.22 -2.91 -0.02 5.15 16 31 H 0.42 10.56 6.52 -92.71 -0.60 9.95 16 32 H 0.07 1.83 8.14 -2.38 -0.02 1.81 16 33 H 0.08 1.95 6.30 -2.38 -0.02 1.94 16 34 H 0.08 2.58 7.02 -2.39 -0.02 2.56 16 35 H 0.02 0.85 8.14 -2.39 -0.02 0.83 16 36 H 0.05 2.19 7.67 -2.39 -0.02 2.18 16 37 H 0.07 3.78 6.07 -2.39 -0.01 3.77 16 38 H 0.26 14.68 8.31 -92.71 -0.77 13.91 16 39 H 0.15 3.34 8.06 -2.91 -0.02 3.32 16 40 H 0.12 0.68 8.14 -2.39 -0.02 0.66 16 41 H 0.06 0.57 7.66 -2.39 -0.02 0.56 16 42 H 0.07 0.55 7.66 -2.39 -0.02 0.53 16 43 H 0.17 2.61 4.52 -2.91 -0.01 2.60 16 Total: -1.00 -77.84 350.42 4.15 -73.69 By element: Atomic # 1 Polarization: 22.37 SS G_CDS: 0.44 Total: 22.81 kcal Atomic # 6 Polarization: 9.53 SS G_CDS: 7.41 Total: 16.94 kcal Atomic # 7 Polarization: -102.81 SS G_CDS: -3.74 Total: -106.55 kcal Atomic # 8 Polarization: -50.40 SS G_CDS: -1.99 Total: -52.39 kcal Atomic # 14 Polarization: 43.48 SS G_CDS: 2.03 Total: 45.51 kcal Total: -77.84 4.15 -73.69 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000086280343.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.884 kcal (2) G-P(sol) polarization free energy of solvation -77.836 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.720 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.148 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.688 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.572 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds