Wall clock time and date at job start Tue Mar 31 2020 09:26:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35894 * 116.99485 * 2 1 4 4 C 1.38649 * 119.98960 * 180.02562 * 3 2 1 5 5 C 1.38807 * 119.98521 * 180.02562 * 4 3 2 6 6 N 1.39941 * 120.01524 * 179.97438 * 5 4 3 7 7 C 1.34781 * 119.99534 * 34.75884 * 6 5 4 8 8 O 1.21586 * 120.00493 * 5.47101 * 7 6 5 9 9 N 1.34774 * 119.99709 * 185.46455 * 7 6 5 10 10 C 1.46505 * 120.00129 * 0.02562 * 9 7 6 11 11 C 1.46502 * 119.99953 * 180.02562 * 9 7 6 12 12 H 1.08998 * 109.47098 * 0.02562 * 11 9 7 13 13 C 1.53000 * 109.47063 * 239.99849 * 11 9 7 14 14 C 1.50701 * 109.47187 * 120.00144 * 11 9 7 15 15 H 1.07999 * 119.99951 * 5.25203 * 14 11 9 16 16 C 1.37881 * 120.00110 * 185.25564 * 14 11 9 17 17 N 1.31518 * 119.99827 * 184.84603 * 16 14 11 18 18 Si 1.86799 * 119.99835 * 5.11366 * 16 14 11 19 19 H 1.48500 * 109.47422 * 269.72659 * 18 16 14 20 20 H 1.48503 * 109.47111 * 29.72692 * 18 16 14 21 21 H 1.48500 * 109.47029 * 149.72657 * 18 16 14 22 22 C 1.38804 * 119.97274 * 0.26838 * 5 4 3 23 23 C 1.38644 * 119.98302 * 359.50192 * 22 5 4 24 24 O 1.35902 * 119.99351 * 180.22830 * 23 22 5 25 25 C 1.42907 * 116.99959 * 180.25042 * 24 23 22 26 26 C 1.38684 * 119.99607 * 0.02562 * 3 2 1 27 27 H 1.09003 * 109.47060 * 180.02562 * 1 2 3 28 28 H 1.08997 * 109.47682 * 300.00442 * 1 2 3 29 29 H 1.08999 * 109.47519 * 60.00190 * 1 2 3 30 30 H 1.08005 * 120.00920 * 359.97438 * 4 3 2 31 31 H 0.96992 * 120.00349 * 214.75527 * 6 5 4 32 32 H 1.09004 * 109.46704 * 269.99780 * 10 9 7 33 33 H 1.09003 * 109.46789 * 29.99537 * 10 9 7 34 34 H 1.09000 * 109.47111 * 149.99973 * 10 9 7 35 35 H 1.08993 * 109.47334 * 294.93393 * 13 11 9 36 36 H 1.08999 * 109.47036 * 54.93382 * 13 11 9 37 37 H 1.09000 * 109.46901 * 174.93220 * 13 11 9 38 38 H 0.97000 * 119.99880 * 355.26652 * 17 16 14 39 39 H 1.08002 * 120.00934 * 179.72068 * 22 5 4 40 40 H 1.08998 * 109.46744 * 179.97438 * 25 24 23 41 41 H 1.09004 * 109.46791 * 299.99837 * 25 24 23 42 42 H 1.08997 * 109.46617 * 59.99961 * 25 24 23 43 43 H 1.07995 * 119.98922 * 359.97438 * 26 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0458 1.2109 0.0000 4 6 3.4304 1.2833 -0.0005 5 6 4.0604 2.5202 0.0000 6 7 5.4578 2.5941 0.0000 7 6 6.1813 1.6722 -0.6659 8 8 5.6209 0.8359 -1.3477 9 7 7.5260 1.6776 -0.5762 10 6 8.2014 2.6850 0.2457 11 6 8.3125 0.6760 -1.3004 12 1 7.6421 0.0175 -1.8528 13 6 9.1309 -0.1478 -0.3042 14 6 9.2424 1.3678 -2.2636 15 1 9.3088 2.4458 -2.2701 16 6 10.0084 0.6247 -3.1366 17 7 10.8889 1.2211 -3.9103 18 14 9.7903 -1.2284 -3.2256 19 1 10.7110 -1.8822 -2.2612 20 1 8.3876 -1.5786 -2.8860 21 1 10.0987 -1.6976 -4.6003 22 6 3.3037 3.6838 0.0067 23 6 1.9192 3.6100 0.0024 24 8 1.1781 4.7492 0.0043 25 6 -0.2430 4.5987 0.0052 26 6 1.2903 2.3739 0.0005 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3634 0.5139 0.8899 29 1 -0.3634 0.5138 -0.8900 30 1 4.0187 0.3776 -0.0005 31 1 5.9058 3.3086 0.4791 32 1 8.4206 3.5626 -0.3626 33 1 7.5544 2.9703 1.0753 34 1 9.1315 2.2717 0.6357 35 1 9.8635 0.4951 0.1835 36 1 8.4660 -0.5754 0.4463 37 1 9.6460 -0.9499 -0.8326 38 1 10.9517 2.1891 -3.9170 39 1 3.7932 4.6465 0.0117 40 1 -0.7125 5.5823 0.0072 41 1 -0.5508 4.0504 -0.8852 42 1 -0.5494 4.0484 0.8948 43 1 0.2119 2.3170 0.0005 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000086280344.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:26:52 Heat of formation + Delta-G solvation = -58.469404 kcal Electronic energy + Delta-G solvation = -25660.669054 eV Core-core repulsion = 21900.869567 eV Total energy + Delta-G solvation = -3759.799487 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 308.157 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.80814 -39.77716 -38.90106 -37.10228 -35.46113 -34.05863 -32.65529 -30.38854 -30.34295 -28.93480 -27.89413 -26.75218 -26.34155 -24.74359 -22.87376 -22.42160 -20.86169 -19.26899 -18.91966 -17.70190 -17.36324 -16.97863 -16.28211 -16.11574 -15.87829 -15.72367 -15.61885 -14.98629 -14.82490 -14.73006 -13.79220 -13.49778 -13.20250 -12.97827 -12.75390 -12.68652 -12.55772 -12.36381 -12.14786 -11.75454 -11.70799 -11.58056 -11.45235 -11.37111 -11.32454 -10.96615 -10.52186 -10.04807 -9.72529 -9.69098 -9.47532 -8.88841 -8.48849 -8.13885 -7.99071 -7.76112 -6.45396 -4.14558 1.30192 1.50792 2.75136 3.15993 3.35652 3.36858 3.50240 3.51540 3.62269 3.94638 4.35448 4.46437 4.72938 4.83064 4.86498 4.87984 4.95277 5.07352 5.16998 5.21210 5.26605 5.27278 5.38243 5.45967 5.57984 5.87321 6.00607 6.12013 6.18848 6.27142 6.30164 6.35796 6.40707 6.53091 6.86381 6.88397 6.96859 7.06607 7.35887 7.45017 7.54709 7.87383 8.32170 8.42290 8.81072 9.06046 9.55961 10.92343 Molecular weight = 308.16amu Principal moments of inertia in cm(-1) A = 0.020163 B = 0.003407 C = 0.003142 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1388.367330 B = 8215.894197 C = 8908.439617 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.310 6.310 3 C 0.182 3.818 4 C -0.187 4.187 5 C 0.257 3.743 6 N -0.690 5.690 7 C 0.698 3.302 8 O -0.573 6.573 9 N -0.597 5.597 10 C 0.086 3.914 11 C 0.242 3.758 12 H 0.065 0.935 13 C -0.160 4.160 14 C -0.603 4.603 15 H 0.061 0.939 16 C 0.033 3.967 17 N -0.909 5.909 18 Si 1.049 2.951 19 H -0.282 1.282 20 H -0.273 1.273 21 H -0.288 1.288 22 C -0.222 4.222 23 C 0.181 3.819 24 O -0.314 6.314 25 C 0.029 3.971 26 C -0.319 4.319 27 H 0.099 0.901 28 H 0.053 0.947 29 H 0.054 0.946 30 H 0.147 0.853 31 H 0.407 0.593 32 H 0.051 0.949 33 H 0.049 0.951 34 H 0.078 0.922 35 H 0.053 0.947 36 H 0.032 0.968 37 H 0.054 0.946 38 H 0.267 0.733 39 H 0.133 0.867 40 H 0.099 0.901 41 H 0.055 0.945 42 H 0.054 0.946 43 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.622 4.440 12.643 24.593 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.223 6.223 3 C 0.136 3.864 4 C -0.209 4.209 5 C 0.160 3.840 6 N -0.340 5.340 7 C 0.400 3.600 8 O -0.449 6.449 9 N -0.331 5.331 10 C -0.058 4.058 11 C 0.140 3.860 12 H 0.083 0.917 13 C -0.218 4.218 14 C -0.641 4.641 15 H 0.079 0.921 16 C -0.172 4.172 17 N -0.543 5.543 18 Si 0.878 3.122 19 H -0.209 1.209 20 H -0.199 1.199 21 H -0.214 1.214 22 C -0.243 4.243 23 C 0.135 3.865 24 O -0.227 6.227 25 C -0.067 4.067 26 C -0.340 4.340 27 H 0.118 0.882 28 H 0.071 0.929 29 H 0.072 0.928 30 H 0.164 0.836 31 H 0.244 0.756 32 H 0.070 0.930 33 H 0.068 0.932 34 H 0.097 0.903 35 H 0.072 0.928 36 H 0.051 0.949 37 H 0.073 0.927 38 H 0.077 0.923 39 H 0.151 0.849 40 H 0.117 0.883 41 H 0.073 0.927 42 H 0.072 0.928 43 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -20.137 2.423 11.403 23.268 hybrid contribution -0.720 1.992 0.915 2.308 sum -20.858 4.415 12.318 24.622 Atomic orbital electron populations 1.23038 0.78715 1.03853 1.01095 1.86126 1.21078 1.26773 1.88299 1.18404 0.91488 0.83467 0.93064 1.20265 0.91308 0.98568 1.10710 1.16690 0.82110 0.91959 0.93280 1.42925 1.03787 1.31977 1.55273 1.15931 0.82248 0.81685 0.80168 1.90914 1.69919 1.40148 1.43957 1.47285 1.02821 1.33321 1.49708 1.21545 0.98314 0.92461 0.93443 1.19368 0.90196 0.86791 0.89604 0.91739 1.22424 0.99968 0.99930 0.99466 1.22273 1.26220 0.95082 1.20547 0.92105 1.25700 0.92220 1.06745 0.92578 1.70828 1.32192 1.11849 1.39440 0.83953 0.76901 0.74955 0.76377 1.20921 1.19901 1.21420 1.19835 0.90608 0.98072 1.15830 1.18207 0.90320 0.84360 0.93636 1.86066 1.18931 1.29153 1.88595 1.23036 0.78648 1.03679 1.01299 1.21092 1.00133 0.91869 1.20880 0.88238 0.92856 0.92751 0.83568 0.75581 0.93010 0.93237 0.90316 0.92816 0.94902 0.92701 0.92289 0.84868 0.88278 0.92685 0.92761 0.85085 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.24 9.81 101.05 0.99 1.23 16 2 O -0.31 -4.26 10.49 -19.41 -0.20 -4.47 16 3 C 0.18 2.70 6.68 -39.27 -0.26 2.44 16 4 C -0.19 -3.20 8.58 -39.22 -0.34 -3.54 16 5 C 0.26 4.14 6.25 -83.74 -0.52 3.61 16 6 N -0.69 -11.23 5.17 -14.25 -0.07 -11.30 16 7 C 0.70 14.57 8.00 -86.92 -0.70 13.87 16 8 O -0.57 -14.11 13.46 5.29 0.07 -14.04 16 9 N -0.60 -12.46 2.75 -181.00 -0.50 -12.96 16 10 C 0.09 1.39 9.34 59.85 0.56 1.95 16 11 C 0.24 5.90 2.21 -69.08 -0.15 5.74 16 12 H 0.06 1.75 5.41 -51.93 -0.28 1.47 16 13 C -0.16 -3.40 8.65 37.16 0.32 -3.08 16 14 C -0.60 -16.72 8.77 -34.44 -0.30 -17.02 16 15 H 0.06 1.79 7.74 -52.49 -0.41 1.39 16 16 C 0.03 0.94 5.43 -17.82 -0.10 0.84 16 17 N -0.91 -27.81 13.70 55.43 0.76 -27.05 16 18 Si 1.05 25.78 25.27 -169.99 -4.30 21.48 16 19 H -0.28 -6.44 6.82 56.52 0.39 -6.06 16 20 H -0.27 -6.53 6.35 56.52 0.36 -6.18 16 21 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 22 C -0.22 -3.11 9.90 -39.22 -0.39 -3.50 16 23 C 0.18 2.38 6.68 -39.26 -0.26 2.12 16 24 O -0.31 -3.62 10.49 -19.43 -0.20 -3.83 16 25 C 0.03 0.20 9.81 101.05 0.99 1.20 16 26 C -0.32 -3.98 8.02 -39.25 -0.31 -4.30 16 27 H 0.10 0.63 8.14 -51.93 -0.42 0.21 16 28 H 0.05 0.36 7.66 -51.93 -0.40 -0.03 16 29 H 0.05 0.41 7.66 -51.93 -0.40 0.01 16 30 H 0.15 2.84 6.52 -52.48 -0.34 2.50 16 31 H 0.41 5.23 6.63 -40.82 -0.27 4.96 16 32 H 0.05 0.84 8.09 -51.93 -0.42 0.42 16 33 H 0.05 0.60 6.45 -51.93 -0.33 0.26 16 34 H 0.08 1.26 6.53 -51.93 -0.34 0.92 16 35 H 0.05 1.08 6.88 -51.93 -0.36 0.72 16 36 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16 37 H 0.05 1.19 4.39 -51.93 -0.23 0.96 16 38 H 0.27 8.12 8.72 -40.82 -0.36 7.76 16 39 H 0.13 1.65 8.06 -52.49 -0.42 1.22 16 40 H 0.10 0.48 8.14 -51.93 -0.42 0.06 16 41 H 0.05 0.36 7.66 -51.93 -0.40 -0.04 16 42 H 0.05 0.32 7.66 -51.93 -0.40 -0.07 16 43 H 0.13 1.24 4.51 -52.49 -0.24 1.00 16 LS Contribution 344.76 15.07 5.20 5.20 Total: -1.00 -34.98 344.76 -5.43 -40.41 By element: Atomic # 1 Polarization: 10.70 SS G_CDS: -5.71 Total: 4.99 kcal Atomic # 6 Polarization: 2.03 SS G_CDS: -0.47 Total: 1.56 kcal Atomic # 7 Polarization: -51.49 SS G_CDS: 0.19 Total: -51.31 kcal Atomic # 8 Polarization: -21.99 SS G_CDS: -0.34 Total: -22.33 kcal Atomic # 14 Polarization: 25.78 SS G_CDS: -4.30 Total: 21.48 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -34.98 -5.43 -40.41 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000086280344.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.061 kcal (2) G-P(sol) polarization free energy of solvation -34.978 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.040 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.430 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.408 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.469 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds