Wall clock time and date at job start Tue Mar 31 2020 09:26:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.35986 * 116.99928 * 2 1 4 4 C 1.38712 * 119.97320 * 359.97438 * 3 2 1 5 5 C 1.38241 * 120.11715 * 180.02562 * 4 3 2 6 6 C 1.38509 * 120.06729 * 359.97438 * 5 4 3 7 7 O 1.36059 * 120.02642 * 179.97438 * 6 5 4 8 8 C 1.42900 * 116.99965 * 0.02562 * 7 6 5 9 9 C 1.39265 * 119.94893 * 359.97438 * 6 5 4 10 10 N 1.40155 * 120.05700 * 179.97438 * 9 6 5 11 11 C 1.34779 * 119.99913 * 214.92309 * 10 9 6 12 12 O 1.21600 * 119.99999 * 355.58444 * 11 10 9 13 13 N 1.34773 * 120.00244 * 175.58887 * 11 10 9 14 14 C 1.46497 * 120.00087 * 359.97438 * 13 11 10 15 15 C 1.46502 * 120.00098 * 179.97438 * 13 11 10 16 16 H 1.09000 * 109.47239 * 0.02562 * 15 13 11 17 17 C 1.53001 * 109.47087 * 119.99798 * 15 13 11 18 18 C 1.50691 * 109.47537 * 240.00075 * 15 13 11 19 19 H 1.08011 * 120.00148 * 359.97438 * 18 15 13 20 20 C 1.37878 * 120.00331 * 180.02562 * 18 15 13 21 21 N 1.31511 * 119.99679 * 359.97438 * 20 18 15 22 22 Si 1.86800 * 119.99949 * 180.02562 * 20 18 15 23 23 H 1.48500 * 109.47415 * 59.99687 * 22 20 18 24 24 H 1.48506 * 109.46981 * 179.97438 * 22 20 18 25 25 H 1.48505 * 109.47094 * 299.99507 * 22 20 18 26 26 C 1.38632 * 119.97208 * 180.25002 * 3 2 1 27 27 H 1.09000 * 109.47265 * 300.00142 * 1 2 3 28 28 H 1.09006 * 109.47087 * 60.00038 * 1 2 3 29 29 H 1.09000 * 109.47068 * 180.02562 * 1 2 3 30 30 H 1.08000 * 119.94008 * 0.02562 * 4 3 2 31 31 H 1.07997 * 119.96349 * 179.97438 * 5 4 3 32 32 H 1.08998 * 109.47090 * 299.99958 * 8 7 6 33 33 H 1.09001 * 109.47317 * 60.00409 * 8 7 6 34 34 H 1.09002 * 109.47306 * 179.97438 * 8 7 6 35 35 H 0.96993 * 120.00541 * 34.91801 * 10 9 6 36 36 H 1.09003 * 109.47086 * 270.00331 * 14 13 11 37 37 H 1.08998 * 109.46875 * 30.00110 * 14 13 11 38 38 H 1.09003 * 109.47111 * 150.00304 * 14 13 11 39 39 H 1.09002 * 109.47092 * 300.00440 * 17 15 13 40 40 H 1.09004 * 109.47007 * 60.00239 * 17 15 13 41 41 H 1.08993 * 109.47271 * 180.02562 * 17 15 13 42 42 H 0.97009 * 119.99628 * 180.02562 * 21 20 18 43 43 H 1.08000 * 120.03783 * 359.97438 * 26 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0463 1.2117 0.0000 4 6 1.2903 2.3746 -0.0005 5 6 1.9147 3.6079 -0.0011 6 6 3.2977 3.6855 -0.0005 7 8 3.9114 4.8998 -0.0016 8 6 3.0677 6.0532 -0.0027 9 6 4.0594 2.5197 0.0011 10 7 5.4589 2.5956 0.0011 11 6 6.1837 1.6756 -0.6658 12 8 5.6285 0.7348 -1.2001 13 7 7.5237 1.7981 -0.7405 14 6 8.1926 2.9317 -0.0973 15 6 8.3116 0.7977 -1.4650 16 1 7.6461 0.0368 -1.8727 17 6 9.0705 1.4758 -2.6074 18 6 9.2944 0.1531 -0.5220 19 1 9.3291 0.4583 0.5135 20 6 10.1501 -0.8257 -0.9812 21 7 10.1082 -1.1970 -2.2421 22 14 11.3679 -1.6252 0.1880 23 1 10.6309 -2.2841 1.2961 24 1 12.1666 -2.6392 -0.5465 25 1 12.2742 -0.5884 0.7439 26 6 3.4307 1.2836 -0.0052 27 1 -0.3634 0.5139 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 0.2118 2.3165 -0.0005 31 1 1.3237 4.5118 -0.0019 32 1 2.4386 6.0423 -0.8927 33 1 2.4385 6.0439 0.8873 34 1 3.6826 6.9532 -0.0030 35 1 5.9059 3.3102 0.4809 36 1 8.2602 3.7610 -0.8015 37 1 7.6204 3.2429 0.7767 38 1 9.1949 2.6346 0.2115 39 1 8.3595 1.9421 -3.2895 40 1 9.7360 2.2370 -2.2001 41 1 9.6562 0.7315 -3.1467 42 1 10.7100 -1.8859 -2.5651 43 1 4.0191 0.3779 -0.0089 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000086280419.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:26:56 Heat of formation + Delta-G solvation = -56.851687 kcal Electronic energy + Delta-G solvation = -25863.906414 eV Core-core repulsion = 22104.177076 eV Total energy + Delta-G solvation = -3759.729338 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 308.157 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.72187 -39.37762 -38.87791 -36.53812 -35.29369 -34.13956 -32.71598 -30.34647 -29.63265 -28.61823 -27.27376 -26.90060 -26.07204 -25.17167 -23.03469 -21.93747 -20.94452 -19.12300 -18.60453 -17.68177 -17.32890 -16.51960 -16.34960 -15.87926 -15.79270 -15.53498 -14.96414 -14.76027 -14.69222 -14.11351 -13.87211 -13.40422 -13.09597 -12.81640 -12.76601 -12.50395 -12.44741 -12.32683 -11.69418 -11.65483 -11.60325 -11.47488 -11.02581 -10.95849 -10.82607 -10.67606 -10.51898 -10.22785 -10.12440 -9.94259 -9.28411 -9.07226 -8.39200 -8.21992 -7.64509 -7.37512 -6.03152 -4.11031 1.35234 1.53311 3.09962 3.20604 3.31078 3.36249 3.38276 3.51901 3.66776 4.06192 4.40006 4.60363 4.71079 4.89419 5.02091 5.02249 5.04000 5.08933 5.22365 5.28004 5.33698 5.40149 5.54020 5.66600 5.89559 5.95267 6.04383 6.18443 6.33649 6.46504 6.48648 6.75529 6.86126 6.98792 7.07439 7.21333 7.34082 7.52330 7.57723 7.72629 7.87789 8.11596 8.25788 8.68770 8.89616 9.26560 9.55753 11.02079 Molecular weight = 308.16amu Principal moments of inertia in cm(-1) A = 0.016409 B = 0.003742 C = 0.003245 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1705.933832 B = 7480.834451 C = 8626.828471 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.313 6.313 3 C 0.113 3.887 4 C -0.198 4.198 5 C -0.152 4.152 6 C 0.056 3.944 7 O -0.317 6.317 8 C 0.031 3.969 9 C 0.195 3.805 10 N -0.685 5.685 11 C 0.696 3.304 12 O -0.578 6.578 13 N -0.602 5.602 14 C 0.085 3.915 15 C 0.272 3.728 16 H 0.066 0.934 17 C -0.146 4.146 18 C -0.527 4.527 19 H 0.059 0.941 20 C 0.065 3.935 21 N -0.887 5.887 22 Si 0.899 3.101 23 H -0.277 1.277 24 H -0.286 1.286 25 H -0.277 1.277 26 C -0.119 4.119 27 H 0.052 0.948 28 H 0.052 0.948 29 H 0.097 0.903 30 H 0.127 0.873 31 H 0.130 0.870 32 H 0.052 0.948 33 H 0.051 0.949 34 H 0.097 0.903 35 H 0.407 0.593 36 H 0.044 0.956 37 H 0.046 0.954 38 H 0.085 0.915 39 H 0.011 0.989 40 H 0.029 0.971 41 H 0.094 0.906 42 H 0.264 0.736 43 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.699 12.832 5.743 21.829 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.226 6.226 3 C 0.068 3.932 4 C -0.218 4.218 5 C -0.172 4.172 6 C 0.009 3.991 7 O -0.231 6.231 8 C -0.064 4.064 9 C 0.097 3.903 10 N -0.335 5.335 11 C 0.398 3.602 12 O -0.455 6.455 13 N -0.337 5.337 14 C -0.059 4.059 15 C 0.172 3.828 16 H 0.083 0.917 17 C -0.205 4.205 18 C -0.566 4.566 19 H 0.077 0.923 20 C -0.137 4.137 21 N -0.525 5.525 22 Si 0.727 3.273 23 H -0.203 1.203 24 H -0.212 1.212 25 H -0.203 1.203 26 C -0.141 4.141 27 H 0.070 0.930 28 H 0.071 0.929 29 H 0.115 0.885 30 H 0.145 0.855 31 H 0.148 0.852 32 H 0.071 0.929 33 H 0.070 0.930 34 H 0.115 0.885 35 H 0.245 0.755 36 H 0.062 0.938 37 H 0.065 0.935 38 H 0.103 0.897 39 H 0.030 0.970 40 H 0.048 0.952 41 H 0.112 0.888 42 H 0.074 0.926 43 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges -16.561 11.844 5.170 21.006 hybrid contribution 0.397 0.341 0.851 0.999 sum -16.163 12.185 6.021 21.118 Atomic orbital electron populations 1.23001 0.78980 1.03664 1.00946 1.86131 1.20762 1.26687 1.89067 1.18688 0.91756 0.84088 0.98714 1.20881 0.99651 0.91587 1.09648 1.20677 0.92272 0.98234 1.05999 1.18617 0.90895 0.84361 1.05214 1.86048 1.35282 1.11963 1.89856 1.22974 0.95771 0.86681 1.00969 1.16485 0.82422 0.90157 1.01223 1.42784 1.03437 1.32435 1.54871 1.15993 0.82367 0.82265 0.79525 1.90873 1.69931 1.32762 1.51970 1.47587 1.03287 1.27392 1.55399 1.21545 0.99712 0.88989 0.95696 1.18895 0.89564 0.85012 0.89300 0.91660 1.22098 0.99344 1.00388 0.98661 1.21299 1.18537 1.20805 0.95910 0.92292 1.24878 0.97247 0.96337 0.95248 1.69876 1.38291 1.30420 1.13947 0.86550 0.80866 0.79082 0.80823 1.20254 1.21195 1.20282 1.20497 0.91508 0.98275 1.03792 0.92974 0.92899 0.88472 0.85510 0.85195 0.92935 0.93002 0.88495 0.75518 0.93779 0.93529 0.89663 0.96988 0.95191 0.88770 0.92638 0.82137 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.27 9.81 101.05 0.99 1.26 16 2 O -0.31 -4.59 10.50 -19.70 -0.21 -4.80 16 3 C 0.11 1.74 6.68 -39.26 -0.26 1.48 16 4 C -0.20 -2.45 9.03 -39.41 -0.36 -2.80 16 5 C -0.15 -1.83 9.03 -39.48 -0.36 -2.18 16 6 C 0.06 0.80 6.70 -39.10 -0.26 0.54 16 7 O -0.32 -4.05 10.05 -19.93 -0.20 -4.25 16 8 C 0.03 0.25 9.81 101.05 0.99 1.24 16 9 C 0.19 3.35 6.32 -83.50 -0.53 2.82 16 10 N -0.69 -12.26 5.07 -14.12 -0.07 -12.33 16 11 C 0.70 15.46 8.13 -86.92 -0.71 14.75 16 12 O -0.58 -14.90 13.08 5.28 0.07 -14.83 16 13 N -0.60 -13.31 2.75 -181.01 -0.50 -13.81 16 14 C 0.08 1.46 9.24 59.85 0.55 2.01 16 15 C 0.27 7.10 2.64 -69.09 -0.18 6.92 16 16 H 0.07 1.97 6.90 -51.93 -0.36 1.61 16 17 C -0.15 -3.57 8.97 37.16 0.33 -3.24 16 18 C -0.53 -14.34 7.99 -34.44 -0.28 -14.62 16 19 H 0.06 1.57 7.33 -52.48 -0.38 1.19 16 20 C 0.07 1.79 5.30 -17.82 -0.09 1.70 16 21 N -0.89 -25.29 11.32 55.43 0.63 -24.67 16 22 Si 0.90 21.18 29.54 -169.99 -5.02 16.16 16 23 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 24 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 25 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 26 C -0.12 -2.16 8.63 -39.27 -0.34 -2.50 16 27 H 0.05 0.39 7.66 -51.93 -0.40 0.00 16 28 H 0.05 0.43 7.66 -51.93 -0.40 0.03 16 29 H 0.10 0.71 8.14 -51.93 -0.42 0.28 16 30 H 0.13 1.18 6.28 -52.49 -0.33 0.85 16 31 H 0.13 1.14 6.29 -52.49 -0.33 0.81 16 32 H 0.05 0.38 7.66 -51.93 -0.40 -0.02 16 33 H 0.05 0.34 7.66 -51.93 -0.40 -0.05 16 34 H 0.10 0.59 8.14 -51.93 -0.42 0.17 16 35 H 0.41 6.20 6.26 -40.82 -0.26 5.95 16 36 H 0.04 0.69 8.14 -51.93 -0.42 0.26 16 37 H 0.05 0.66 6.30 -51.93 -0.33 0.33 16 38 H 0.08 1.54 7.02 -51.93 -0.36 1.17 16 39 H 0.01 0.26 8.14 -51.93 -0.42 -0.16 16 40 H 0.03 0.67 7.67 -51.93 -0.40 0.27 16 41 H 0.09 2.51 6.07 -51.93 -0.32 2.19 16 42 H 0.26 7.17 8.31 -40.82 -0.34 6.83 16 43 H 0.16 3.38 6.19 -52.49 -0.32 3.06 16 LS Contribution 349.75 15.07 5.27 5.27 Total: -1.00 -33.20 349.75 -6.33 -39.53 By element: Atomic # 1 Polarization: 12.15 SS G_CDS: -5.80 Total: 6.34 kcal Atomic # 6 Polarization: 7.88 SS G_CDS: -0.49 Total: 7.38 kcal Atomic # 7 Polarization: -50.87 SS G_CDS: 0.06 Total: -50.81 kcal Atomic # 8 Polarization: -23.54 SS G_CDS: -0.34 Total: -23.88 kcal Atomic # 14 Polarization: 21.18 SS G_CDS: -5.02 Total: 16.16 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -33.20 -6.33 -39.53 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000086280419.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.323 kcal (2) G-P(sol) polarization free energy of solvation -33.200 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.523 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.329 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.529 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.852 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds